RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PPP1R42Q7Z4L9 355 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 TDRD7Q8NHU6 1098 aaKnown RBP11.79□□□□□ -0.52
VPS39-214ENST00000614932 SPATS2LQ9NUQ6 558 aaKnown RBP11.79□□□□□ -0.52
VPS39-214ENST00000614932 ADAMTSL3P82987 1691 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 MYBL2P10244 700 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 LIG3P49916 1009 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 NEK4P51957 841 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 CCT2P78371 535 aaKnown RBP11.79□□□□□ -0.52
VPS39-214ENST00000614932 TYRO3Q06418 890 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 DDR1Q08345 913 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 FBXW10Q5XX13 1052 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 WWC2Q6AWC2 1192 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 ARMC2Q8NEN0 867 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 LRRCC1Q9C099 1032 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 C1orf167Q5SNV9 1468 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 CEMIPQ8WUJ3 1361 aa11.79□□□□□ -0.52
VPS39-214ENST00000614932 SRGAP3O43295 1099 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 RDXP35241 583 aaKnown RBP11.78□□□□□ -0.52
VPS39-214ENST00000614932 CCZ1BP86790 482 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 CCZ1P86791 482 aaPredicted RBP11.78□□□□□ -0.52
VPS39-214ENST00000614932 ATP8B2P98198 1209 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 GORABQ5T7V8 394 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 KLHL23Q8NBE8 558 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 TMCO5BA8MYB1 307 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 CCNHP51946 323 aaPredicted RBP11.78□□□□□ -0.52
VPS39-214ENST00000614932 ARID5BQ14865 1188 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 C1QTNF12Q5T7M4 302 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 NOL8Q76FK4 1167 aaKnown RBP11.78□□□□□ -0.52
VPS39-214ENST00000614932 UNC5CLQ8IV45 518 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 GPR161Q8N6U8 529 aaKnown RBP11.78□□□□□ -0.52
VPS39-214ENST00000614932 CCDC69A6NI79 296 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 KINO60870 393 aaKnown RBP11.78□□□□□ -0.52
VPS39-214ENST00000614932 ICA1Q05084 483 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 MAP3K11Q16584 847 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 PRPF38AQ8NAV1 312 aaKnown RBP11.78□□□□□ -0.52
VPS39-214ENST00000614932 RAPGEF4Q8WZA2 1011 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 KCNB2Q92953 911 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 AKAP2Q9Y2D5 859 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 MAP3K2Q9Y2U5 619 aa11.78□□□□□ -0.52
VPS39-214ENST00000614932 SOS1Q07889 1333 aaPredicted RBP11.77□□□□□ -0.52
VPS39-214ENST00000614932 MAP2K7O14733 419 aa11.77□□□□□ -0.53
VPS39-214ENST00000614932 EVCP57679 992 aa11.77□□□□□ -0.53
VPS39-214ENST00000614932 APOBRQ0VD83 1088 aa11.77□□□□□ -0.53
VPS39-214ENST00000614932 THOC1Q96FV9 657 aaKnown RBP11.77□□□□□ -0.53
VPS39-214ENST00000614932 RTN2O75298 545 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 MRPL12P52815 198 aaKnown RBP11.76□□□□□ -0.53
VPS39-214ENST00000614932 CCDC96Q2M329 555 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 ANO6Q4KMQ2 910 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 AMOTQ4VCS5 1084 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 CABS1Q96KC9 395 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 BAG1Q99933 345 aaPredicted RBP11.76□□□□□ -0.53
VPS39-214ENST00000614932 PA2G4Q9UQ80 394 aaKnown RBP11.76□□□□□ -0.53
VPS39-214ENST00000614932 FIBPO43427 364 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 GIGYF1O75420 1035 aaPredicted RBP11.76□□□□□ -0.53
VPS39-214ENST00000614932 NEFHP12036 1026 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 PREPLQ4J6C6 727 aaPredicted RBP11.76□□□□□ -0.53
VPS39-214ENST00000614932 ODF2LQ9ULJ1 636 aa11.76□□□□□ -0.53
VPS39-214ENST00000614932 ZNF142P52746 1687 aaPredicted RBP11.75□□□□□ -0.53
VPS39-214ENST00000614932 EXOC5O00471 708 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 CHUKO15111 745 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 EIF3JO75822 258 aaKnown RBP11.75□□□□□ -0.53
VPS39-214ENST00000614932 RBBP5Q15291 538 aaKnown RBP11.75□□□□□ -0.53
VPS39-214ENST00000614932 LONRF2Q1L5Z9 754 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 BEND3Q5T5X7 828 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 POTEDQ86YR6 584 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 ANKRD18AQ8IVF6 992 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 PIK3R5Q8WYR1 880 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 MRFAP1L1Q96HT8 127 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 PPP1R13BQ96KQ4 1090 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 PDE11AQ9HCR9 933 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 C9orf78Q9NZ63 289 aaPredicted RBP11.75□□□□□ -0.53
VPS39-214ENST00000614932 LRRFIP1Q32MZ4 808 aaKnown RBP11.75□□□□□ -0.53
VPS39-214ENST00000614932 CARD6Q9BX69 1037 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 PLEKHA4Q9H4M7 779 aa11.75□□□□□ -0.53
VPS39-214ENST00000614932 RPS6KA3P51812 740 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 PSMD2Q13200 908 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 MSL3Q8N5Y2 521 aaKnown RBP11.74□□□□□ -0.53
VPS39-214ENST00000614932 ZKSCAN4Q969J2 545 aaPredicted RBP11.74□□□□□ -0.53
VPS39-214ENST00000614932 UTP14AQ9BVJ6 771 aaKnown RBP11.74□□□□□ -0.53
VPS39-214ENST00000614932 FAN1Q9Y2M0 1017 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 ATP6V1DQ9Y5K8 247 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 PHLPP2Q6ZVD8 1323 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 A0A1B0GUA9 196 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 PSDA5PKW4 1024 aaPredicted RBP11.74□□□□□ -0.53
VPS39-214ENST00000614932 LRRC37A3O60309 1634 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 ZSCAN22P10073 491 aaPredicted RBP11.74□□□□□ -0.53
VPS39-214ENST00000614932 TTC41PQ6P2S7 1318 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 SARM1Q6SZW1 724 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 CNNM3Q8NE01 707 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 NUP62CLQ9H1M0 184 aa11.74□□□□□ -0.53
VPS39-214ENST00000614932 DBF4Q9UBU7 674 aaPredicted RBP11.74□□□□□ -0.53
VPS39-214ENST00000614932 ADCY9O60503 1353 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 EME2A4GXA9 379 aaPredicted RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 ERC2O15083 957 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 AP1G2O75843 785 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 ECM2O94769 699 aaPredicted RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 SNUPNO95149 360 aaKnown RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 E4F1Q66K89 784 aaPredicted RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 EPC1Q9H2F5 836 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 ACBD3Q9H3P7 528 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms