RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 IL1R1P14778 569 aa13.45□□□□□ -0.26
VRK3-214ENST00000598553 SULF1Q8IWU6 871 aa13.45□□□□□ -0.26
VRK3-214ENST00000598553 IQSEC3Q9UPP2 1182 aaPredicted RBP13.45□□□□□ -0.26
VRK3-214ENST00000598553 ECE1P42892 770 aa13.44□□□□□ -0.26
VRK3-214ENST00000598553 CTCFP49711 727 aaPredicted RBP13.44□□□□□ -0.26
VRK3-214ENST00000598553 RARSP54136 660 aaKnown RBP13.44□□□□□ -0.26
VRK3-214ENST00000598553 FAM84BQ96KN1 310 aaPredicted RBP13.44□□□□□ -0.26
VRK3-214ENST00000598553 MYO3BQ8WXR4 1341 aa13.43□□□□□ -0.26
VRK3-214ENST00000598553 PITPNM2Q9BZ72 1349 aa13.43□□□□□ -0.26
VRK3-214ENST00000598553 LAMB1P07942 1786 aa13.43□□□□□ -0.26
VRK3-214ENST00000598553 TDRD7Q8NHU6 1098 aaKnown RBP13.43□□□□□ -0.26
VRK3-214ENST00000598553 HHIPL1Q96JK4 782 aa13.43□□□□□ -0.26
VRK3-214ENST00000598553 MEIS3Q99687 375 aa13.43□□□□□ -0.26
VRK3-214ENST00000598553 RGMBQ6NW40 437 aa13.42□□□□□ -0.26
VRK3-214ENST00000598553 ZNF804AQ7Z570 1209 aa13.42□□□□□ -0.26
VRK3-214ENST00000598553 RASAL3Q86YV0 1011 aa13.42□□□□□ -0.26
VRK3-214ENST00000598553 AIDAQ96BJ3 306 aa13.42□□□□□ -0.26
VRK3-214ENST00000598553 PRDM10Q9NQV6 1147 aa13.42□□□□□ -0.26
VRK3-214ENST00000598553 CLRN2A0PK11 232 aa13.41□□□□□ -0.26
VRK3-214ENST00000598553 UBE2Q2LH0YL09 131 aa13.41□□□□□ -0.26
VRK3-214ENST00000598553 BCAR3O75815 825 aa13.41□□□□□ -0.26
VRK3-214ENST00000598553 MAP2K1Q02750 393 aaPredicted RBP13.41□□□□□ -0.26
VRK3-214ENST00000598553 PTPN12Q05209 780 aaKnown RBP13.41□□□□□ -0.26
VRK3-214ENST00000598553 UBE4AQ14139 1066 aa13.41□□□□□ -0.26
VRK3-214ENST00000598553 ATG9AQ7Z3C6 839 aa13.41□□□□□ -0.26
VRK3-214ENST00000598553 CDAN1Q8IWY9 1227 aa13.41□□□□□ -0.26
VRK3-214ENST00000598553 PRMT6Q96LA8 375 aaPredicted RBP13.41□□□□□ -0.26
VRK3-214ENST00000598553 PA2G4Q9UQ80 394 aaKnown RBP13.41□□□□□ -0.26
VRK3-214ENST00000598553 LRRFIP2Q9Y608 721 aaKnown RBP13.41□□□□□ -0.26
VRK3-214ENST00000598553 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.41□□□□□ -0.26
VRK3-214ENST00000598553 FAM205AQ6ZU69 1335 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 SLC10A3P09131 477 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 FGFR2P21802 821 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 MAP2K2P36507 400 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 BRPF1P55201 1214 aaPredicted RBP13.4□□□□□ -0.26
VRK3-214ENST00000598553 KIF23Q02241 960 aaPredicted RBP13.4□□□□□ -0.26
VRK3-214ENST00000598553 PRKG1Q13976 671 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 CFAP100Q494V2 611 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 METTL24Q5JXM2 366 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 DIEXFQ68CQ4 756 aaKnown RBP13.4□□□□□ -0.26
VRK3-214ENST00000598553 FBXO33Q7Z6M2 555 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 C2orf69Q8N8R5 385 aa13.4□□□□□ -0.26
VRK3-214ENST00000598553 MROH5Q6ZUA9 1318 aa13.39□□□□□ -0.27
VRK3-214ENST00000598553 PDE8BO95263 885 aa13.39□□□□□ -0.27
VRK3-214ENST00000598553 HIBADHP31937 336 aaKnown RBP13.39□□□□□ -0.27
VRK3-214ENST00000598553 BCAMP50895 628 aa13.39□□□□□ -0.27
VRK3-214ENST00000598553 ZNF157P51786 506 aaPredicted RBP13.39□□□□□ -0.27
VRK3-214ENST00000598553 MFSD14BQ5SR56 506 aa13.39□□□□□ -0.27
VRK3-214ENST00000598553 OGFOD1Q8N543 542 aa13.39□□□□□ -0.27
VRK3-214ENST00000598553 SIL1Q9H173 461 aa13.39□□□□□ -0.27
VRK3-214ENST00000598553 SPDYE2BA6NHP3 402 aa13.38□□□□□ -0.27
VRK3-214ENST00000598553 EYA2O00167 538 aa13.38□□□□□ -0.27
VRK3-214ENST00000598553 CT47B1P0C2W7 299 aaPredicted RBP13.38□□□□□ -0.27
VRK3-214ENST00000598553 SPDYE6P0CI01 402 aa13.38□□□□□ -0.27
VRK3-214ENST00000598553 TRIM27P14373 513 aa13.38□□□□□ -0.27
VRK3-214ENST00000598553 MKRN3Q13064 507 aaKnown RBP13.38□□□□□ -0.27
VRK3-214ENST00000598553 CHAF1AQ13111 956 aaPredicted RBP13.38□□□□□ -0.27
VRK3-214ENST00000598553 MYO5AQ9Y4I1 1855 aaKnown RBP13.38□□□□□ -0.27
VRK3-214ENST00000598553 UBTFL1P0CB47 393 aaPredicted RBP13.37□□□□□ -0.27
VRK3-214ENST00000598553 FKBP1AP62942 108 aaKnown RBP13.37□□□□□ -0.27
VRK3-214ENST00000598553 HNRNPUQ00839 825 aaKnown RBP eCLIP13.37□□□□□ -0.27
VRK3-214ENST00000598553 NOGQ13253 232 aa13.37□□□□□ -0.27
VRK3-214ENST00000598553 DLGAP5Q15398 846 aa13.37□□□□□ -0.27
VRK3-214ENST00000598553 MTMR14Q8NCE2 650 aa13.37□□□□□ -0.27
VRK3-214ENST00000598553 CLUAP1Q96AJ1 413 aa13.37□□□□□ -0.27
VRK3-214ENST00000598553 CSRNP1Q96S65 589 aa13.37□□□□□ -0.27
VRK3-214ENST00000598553 API5Q9BZZ5 524 aaKnown RBP13.37□□□□□ -0.27
VRK3-214ENST00000598553 HDAC9Q9UKV0 1011 aa13.37□□□□□ -0.27
VRK3-214ENST00000598553 TTF2Q9UNY4 1162 aaKnown RBP13.37□□□□□ -0.27
VRK3-214ENST00000598553 MYH2Q9UKX2 1941 aa13.37□□□□□ -0.27
VRK3-214ENST00000598553 ADORA1P30542 326 aa13.36□□□□□ -0.27
VRK3-214ENST00000598553 INTS3Q68E01 1043 aaKnown RBP13.36□□□□□ -0.27
VRK3-214ENST00000598553 DEFB129Q9H1M3 183 aa13.36□□□□□ -0.27
VRK3-214ENST00000598553 TDRD3Q9H7E2 651 aaKnown RBP13.36□□□□□ -0.27
VRK3-214ENST00000598553 VEZTQ9HBM0 779 aa13.36□□□□□ -0.27
VRK3-214ENST00000598553 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.36□□□□□ -0.27
VRK3-214ENST00000598553 CACNB3P54284 484 aa13.35□□□□□ -0.27
VRK3-214ENST00000598553 TTLL12Q14166 644 aaPredicted RBP13.35□□□□□ -0.27
VRK3-214ENST00000598553 NBPF12Q5TAG4 269 aaPredicted RBP13.35□□□□□ -0.27
VRK3-214ENST00000598553 APOBEC3FQ8IUX4 373 aaKnown RBP13.35□□□□□ -0.27
VRK3-214ENST00000598553 CLMNQ96JQ2 1002 aa13.35□□□□□ -0.27
VRK3-214ENST00000598553 RNF186Q9NXI6 227 aa13.35□□□□□ -0.27
VRK3-214ENST00000598553 KIF16BQ96L93 1317 aa13.35□□□□□ -0.27
VRK3-214ENST00000598553 CRKP46108 304 aa13.34□□□□□ -0.27
VRK3-214ENST00000598553 RBM5P52756 815 aaKnown RBP eCLIP13.34□□□□□ -0.27
VRK3-214ENST00000598553 PUM3Q15397 648 aaKnown RBP13.34□□□□□ -0.27
VRK3-214ENST00000598553 SPDYE2Q495Y8 402 aa13.34□□□□□ -0.27
VRK3-214ENST00000598553 FRAT1Q92837 279 aaPredicted RBP13.34□□□□□ -0.27
VRK3-214ENST00000598553 ZNF70Q9UC06 446 aaPredicted RBP13.34□□□□□ -0.27
VRK3-214ENST00000598553 ANGEL1Q9UNK9 670 aaKnown RBP13.34□□□□□ -0.27
VRK3-214ENST00000598553 RLBP1P12271 317 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 GJA5P36382 358 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 PHKA1P46020 1223 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 FKBP1BP68106 108 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 LDLRAD1Q5T700 205 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 DZIP1LQ8IYY4 767 aaKnown RBP13.33□□□□□ -0.28
VRK3-214ENST00000598553 TMEM57Q8N5G2 664 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 CCDC102AQ96A19 550 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 TEPSINQ96N21 525 aa13.33□□□□□ -0.28
VRK3-214ENST00000598553 BEGAINQ9BUH8 593 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms