RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 CAVIN4Q5BKX8 364 aa20.77■□□□□ 0.92
USHBP1-208ENST00000598309 TMEM57Q8N5G2 664 aa20.77■□□□□ 0.92
USHBP1-208ENST00000598309 WNT10BO00744 389 aa20.76■□□□□ 0.91
USHBP1-208ENST00000598309 GNAI2P04899 355 aa20.76■□□□□ 0.91
USHBP1-208ENST00000598309 IFIT1P09914 478 aaKnown RBP20.76■□□□□ 0.91
USHBP1-208ENST00000598309 SAPCD2Q86UD0 394 aa20.76■□□□□ 0.91
USHBP1-208ENST00000598309 VPS37DQ86XT2 251 aa20.76■□□□□ 0.91
USHBP1-208ENST00000598309 FTSJ3Q8IY81 847 aaKnown RBP20.76■□□□□ 0.91
USHBP1-208ENST00000598309 ZBED3Q96IU2 234 aaPredicted RBP20.76■□□□□ 0.91
USHBP1-208ENST00000598309 HHIPL1Q96JK4 782 aa20.76■□□□□ 0.91
USHBP1-208ENST00000598309 ZNF408Q9H9D4 720 aa20.76■□□□□ 0.91
USHBP1-208ENST00000598309 IL15P40933 162 aaPredicted RBP20.75■□□□□ 0.91
USHBP1-208ENST00000598309 NBPF9Q3BBW0 867 aa20.75■□□□□ 0.91
USHBP1-208ENST00000598309 DZIP1LQ8IYY4 767 aaKnown RBP20.75■□□□□ 0.91
USHBP1-208ENST00000598309 MTMR14Q8NCE2 650 aa20.75■□□□□ 0.91
USHBP1-208ENST00000598309 LPIN2Q92539 896 aa20.75■□□□□ 0.91
USHBP1-208ENST00000598309 SIL1Q9H173 461 aa20.75■□□□□ 0.91
USHBP1-208ENST00000598309 SRGAP3O43295 1099 aa20.74■□□□□ 0.91
USHBP1-208ENST00000598309 SLC5A1P13866 664 aa20.74■□□□□ 0.91
USHBP1-208ENST00000598309 ECE1P42892 770 aa20.74■□□□□ 0.91
USHBP1-208ENST00000598309 MFSD14BQ5SR56 506 aa20.74■□□□□ 0.91
USHBP1-208ENST00000598309 CEP126Q9P2H0 1117 aa20.73■□□□□ 0.91
USHBP1-208ENST00000598309 PA2G4Q9UQ80 394 aaKnown RBP20.73■□□□□ 0.91
USHBP1-208ENST00000598309 JAG2Q9Y219 1238 aa20.73■□□□□ 0.91
USHBP1-208ENST00000598309 WDR33Q9C0J8 1336 aaKnown RBP20.73■□□□□ 0.91
USHBP1-208ENST00000598309 ARAP2Q8WZ64 1704 aa20.73■□□□□ 0.91
USHBP1-208ENST00000598309 THSD7BQ9C0I4 1608 aa20.72■□□□□ 0.91
USHBP1-208ENST00000598309 DLGAP5Q15398 846 aa20.72■□□□□ 0.91
USHBP1-208ENST00000598309 DLK2Q6UY11 383 aa20.72■□□□□ 0.91
USHBP1-208ENST00000598309 CDCA5Q96FF9 252 aa20.72■□□□□ 0.91
USHBP1-208ENST00000598309 CAPNS2Q96L46 248 aa20.72■□□□□ 0.91
USHBP1-208ENST00000598309 GBA2Q9HCG7 927 aaPredicted RBP20.72■□□□□ 0.91
USHBP1-208ENST00000598309 POLR2AP24928 1970 aaKnown RBP20.72■□□□□ 0.91
USHBP1-208ENST00000598309 HSPA1AP0DMV8 641 aaKnown RBP20.71■□□□□ 0.91
USHBP1-208ENST00000598309 HSPA1BP0DMV9 641 aaKnown RBP20.71■□□□□ 0.91
USHBP1-208ENST00000598309 BCAMP50895 628 aa20.71■□□□□ 0.91
USHBP1-208ENST00000598309 ATP2B3Q16720 1220 aa20.71■□□□□ 0.91
USHBP1-208ENST00000598309 APOBEC3FQ8IUX4 373 aaKnown RBP20.71■□□□□ 0.91
USHBP1-208ENST00000598309 TBC1D22AQ8WUA7 517 aa20.71■□□□□ 0.91
USHBP1-208ENST00000598309 F8W031 263 aaPredicted RBP20.7■□□□□ 0.9
USHBP1-208ENST00000598309 FRAT2O75474 233 aaPredicted RBP20.7■□□□□ 0.9
USHBP1-208ENST00000598309 RLBP1P12271 317 aa20.7■□□□□ 0.9
USHBP1-208ENST00000598309 PAXIP1Q6ZW49 1069 aaPredicted RBP20.7■□□□□ 0.9
USHBP1-208ENST00000598309 ITPRIPQ8IWB1 547 aa20.7■□□□□ 0.9
USHBP1-208ENST00000598309 C2orf69Q8N8R5 385 aa20.7■□□□□ 0.9
USHBP1-208ENST00000598309 COL1A1P02452 1464 aaPredicted RBP20.69■□□□□ 0.9
USHBP1-208ENST00000598309 SPDYE2BA6NHP3 402 aa20.69■□□□□ 0.9
USHBP1-208ENST00000598309 SPDYE6P0CI01 402 aa20.69■□□□□ 0.9
USHBP1-208ENST00000598309 HUNKP57058 714 aa20.69■□□□□ 0.9
USHBP1-208ENST00000598309 FKBP1BP68106 108 aa20.69■□□□□ 0.9
USHBP1-208ENST00000598309 CFAP100Q494V2 611 aa20.69■□□□□ 0.9
USHBP1-208ENST00000598309 CYP4F22Q6NT55 531 aa20.69■□□□□ 0.9
USHBP1-208ENST00000598309 IQSEC3Q9UPP2 1182 aaPredicted RBP20.69■□□□□ 0.9
USHBP1-208ENST00000598309 ZBTB22O15209 634 aa20.68■□□□□ 0.9
USHBP1-208ENST00000598309 MYO1BO43795 1136 aa20.68■□□□□ 0.9
USHBP1-208ENST00000598309 MS4A1P11836 297 aa20.68■□□□□ 0.9
USHBP1-208ENST00000598309 SERPINA10Q9UK55 444 aa20.68■□□□□ 0.9
USHBP1-208ENST00000598309 TTF2Q9UNY4 1162 aaKnown RBP20.68■□□□□ 0.9
USHBP1-208ENST00000598309 CHAF1AQ13111 956 aaPredicted RBP20.67■□□□□ 0.9
USHBP1-208ENST00000598309 SUGT1Q9Y2Z0 365 aa20.67■□□□□ 0.9
USHBP1-208ENST00000598309 PAPPA2Q9BXP8 1791 aa20.67■□□□□ 0.9
USHBP1-208ENST00000598309 PNMA6EA0A0J9YXQ4 647 aa20.66■□□□□ 0.9
USHBP1-208ENST00000598309 ZBTB7BO15156 539 aaPredicted RBP20.66■□□□□ 0.9
USHBP1-208ENST00000598309 MAP2K2P36507 400 aa20.66■□□□□ 0.9
USHBP1-208ENST00000598309 HDLBPQ00341 1268 aaKnown RBP20.66■□□□□ 0.9
USHBP1-208ENST00000598309 GNL3LQ9NVN8 582 aaKnown RBP20.66■□□□□ 0.9
USHBP1-208ENST00000598309 AKAP2Q9Y2D5 859 aa20.66■□□□□ 0.9
USHBP1-208ENST00000598309 MAP2K1Q02750 393 aaPredicted RBP20.65■□□□□ 0.9
USHBP1-208ENST00000598309 POLA2Q14181 598 aa20.65■□□□□ 0.9
USHBP1-208ENST00000598309 WDR66Q8TBY9 1149 aa20.65■□□□□ 0.9
USHBP1-208ENST00000598309 PRMT6Q96LA8 375 aaPredicted RBP20.65■□□□□ 0.9
USHBP1-208ENST00000598309 WBP1LQ9NX94 342 aa20.65■□□□□ 0.9
USHBP1-208ENST00000598309 RCAN3Q9UKA8 241 aa20.65■□□□□ 0.9
USHBP1-208ENST00000598309 SCAF8Q9UPN6 1271 aaKnown RBP20.65■□□□□ 0.9
USHBP1-208ENST00000598309 PCDHAC2Q9Y5I4 1007 aa20.65■□□□□ 0.9
USHBP1-208ENST00000598309 PPP2R3BQ9Y5P8 575 aa20.65■□□□□ 0.9
USHBP1-208ENST00000598309 ECM29Q5VYK3 1845 aa20.64■□□□□ 0.9
USHBP1-208ENST00000598309 MAST3O60307 1309 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 SEMA3EO15041 775 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 NF2P35240 595 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 RBM5P52756 815 aaKnown RBP eCLIP20.64■□□□□ 0.89
USHBP1-208ENST00000598309 GRM1Q13255 1194 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 RGMBQ6NW40 437 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 PANK1Q8TE04 598 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 SSH3Q8TE77 659 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 AIDAQ96BJ3 306 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 PCNTO95613 3336 aa20.64■□□□□ 0.89
USHBP1-208ENST00000598309 CRKP46108 304 aa20.63■□□□□ 0.89
USHBP1-208ENST00000598309 ATP8B2P98198 1209 aa20.63■□□□□ 0.89
USHBP1-208ENST00000598309 TFCP2Q12800 502 aa20.63■□□□□ 0.89
USHBP1-208ENST00000598309 NOGQ13253 232 aa20.63■□□□□ 0.89
USHBP1-208ENST00000598309 SPDYE2Q495Y8 402 aa20.63■□□□□ 0.89
USHBP1-208ENST00000598309 MRIQ9BWK5 157 aa20.63■□□□□ 0.89
USHBP1-208ENST00000598309 A0A1B0GUL7 405 aa20.62■□□□□ 0.89
USHBP1-208ENST00000598309 G3BP1Q13283 466 aaKnown RBP eCLIP20.62■□□□□ 0.89
USHBP1-208ENST00000598309 GRIK5Q16478 980 aa20.62■□□□□ 0.89
USHBP1-208ENST00000598309 TEKT1Q969V4 418 aa20.62■□□□□ 0.89
USHBP1-208ENST00000598309 CCDC102AQ96A19 550 aa20.62■□□□□ 0.89
USHBP1-208ENST00000598309 DEFB129Q9H1M3 183 aa20.62■□□□□ 0.89
USHBP1-208ENST00000598309 C1orf115Q9H7X2 142 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms