RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	IL1R1	P14778	569 aa		13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	RGS19	P49795	217 aa		13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	MMP14	P50281	582 aa		13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	MLLT1	Q03111	559 aa	Predicted RBP	13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	PTPN12	Q05209	780 aa	Known RBP	13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	DLGAP5	Q15398	846 aa		13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	REM2	Q8IYK8	340 aa	Predicted RBP	13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	SUCLG2	Q96I99	432 aa		13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	SRCIN1	Q9C0H9	1055 aa		13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	AOX1	Q06278	1338 aa		13.34	□□□□□ -0.27
LSM4-205	ENST00000597776	CLRN2	A0PK11	232 aa		13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	ALDH1L1	O75891	902 aa		13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	TBC1D8	O95759	1140 aa		13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	ARMC9	Q7Z3E5	817 aa		13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	KAZALD1	Q96I82	304 aa		13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	DEFB129	Q9H1M3	183 aa		13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	ZNF521	Q96K83	1311 aa		13.33	□□□□□ -0.28
LSM4-205	ENST00000597776	SSC5D	A1L4H1	1573 aa		13.32	□□□□□ -0.28
LSM4-205	ENST00000597776	COL1A1	P02452	1464 aa	Predicted RBP	13.32	□□□□□ -0.28
LSM4-205	ENST00000597776	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.32	□□□□□ -0.28
LSM4-205	ENST00000597776	CFAP100	Q494V2	611 aa		13.32	□□□□□ -0.28
LSM4-205	ENST00000597776	MTMR14	Q8NCE2	650 aa		13.32	□□□□□ -0.28
LSM4-205	ENST00000597776	PUS3	Q9BZE2	481 aa	Known RBP	13.32	□□□□□ -0.28
LSM4-205	ENST00000597776	ANGEL1	Q9UNK9	670 aa	Known RBP	13.32	□□□□□ -0.28
LSM4-205	ENST00000597776	SPDYE2B	A6NHP3	402 aa		13.31	□□□□□ -0.28
LSM4-205	ENST00000597776	SPDYE6	P0CI01	402 aa		13.31	□□□□□ -0.28
LSM4-205	ENST00000597776	GYG1	P46976	350 aa		13.31	□□□□□ -0.28
LSM4-205	ENST00000597776	LDLRAD1	Q5T700	205 aa		13.31	□□□□□ -0.28
LSM4-205	ENST00000597776	CTU1	Q7Z7A3	348 aa	Known RBP	13.31	□□□□□ -0.28
LSM4-205	ENST00000597776	PRMT6	Q96LA8	375 aa	Predicted RBP	13.31	□□□□□ -0.28
LSM4-205	ENST00000597776	VEZT	Q9HBM0	779 aa		13.31	□□□□□ -0.28
LSM4-205	ENST00000597776	TNRC18	O15417	2968 aa	Predicted RBP	13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	TM4SF4	P48230	202 aa		13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	RBM5	P52756	815 aa	Known RBP eCLIP	13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	SOX10	P56693	466 aa		13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	FKBP1A	P62942	108 aa	Known RBP	13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	SPRYD7	Q5W111	196 aa		13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	MRPL50	Q8N5N7	158 aa	Known RBP	13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	CLMN	Q96JQ2	1002 aa		13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	BICC1	Q9H694	974 aa	Known RBP	13.3	□□□□□ -0.28
LSM4-205	ENST00000597776	ECM29	Q5VYK3	1845 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	MYO1B	O43795	1136 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	SREBF2	Q12772	1141 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	UBE4A	Q14139	1066 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	MFSD14B	Q5SR56	506 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	TDRD7	Q8NHU6	1098 aa	Known RBP	13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	FAM84B	Q96KN1	310 aa	Predicted RBP	13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	R3HDML	Q9H3Y0	253 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	RIPOR2	Q9Y4F9	1068 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	UTY	O14607	1347 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	FAM205A	Q6ZU69	1335 aa		13.29	□□□□□ -0.28
LSM4-205	ENST00000597776	HIBADH	P31937	336 aa	Known RBP	13.28	□□□□□ -0.28
LSM4-205	ENST00000597776	LRRC24	Q50LG9	513 aa		13.28	□□□□□ -0.28
LSM4-205	ENST00000597776	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.28	□□□□□ -0.28
LSM4-205	ENST00000597776	ANKRD44	Q8N8A2	993 aa		13.28	□□□□□ -0.28
LSM4-205	ENST00000597776	SLC10A4	Q96EP9	437 aa		13.28	□□□□□ -0.28
LSM4-205	ENST00000597776	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.28	□□□□□ -0.28
LSM4-205	ENST00000597776	PPP2R3B	Q9Y5P8	575 aa		13.28	□□□□□ -0.28
LSM4-205	ENST00000597776	GPR25	O00155	361 aa		13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	PPP1R12B	O60237	982 aa	Predicted RBP	13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	RASA3	Q14644	834 aa		13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	GRIK5	Q16478	980 aa		13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	MAP3K11	Q16584	847 aa		13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	RABL6	Q3YEC7	729 aa	Predicted RBP	13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	SSH1	Q8WYL5	1049 aa		13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	TTF2	Q9UNY4	1162 aa	Known RBP	13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	HPS5	Q9UPZ3	1129 aa		13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	MROH5	Q6ZUA9	1318 aa		13.27	□□□□□ -0.29
LSM4-205	ENST00000597776	CHAF1A	Q13111	956 aa	Predicted RBP	13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	SUPT20HL1	Q3ZLR7	823 aa		13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	SPDYE2	Q495Y8	402 aa		13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	METTL24	Q5JXM2	366 aa		13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	CDAN1	Q8IWY9	1227 aa		13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	KLHDC4	Q8TBB5	520 aa		13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	ARAP2	Q8WZ64	1704 aa		13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	WNK4	Q96J92	1243 aa		13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	TDRD3	Q9H7E2	651 aa	Known RBP	13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	ZNF70	Q9UC06	446 aa	Predicted RBP	13.26	□□□□□ -0.29
LSM4-205	ENST00000597776	PTPRC	P08575	1304 aa		13.25	□□□□□ -0.29
LSM4-205	ENST00000597776		E9PSI1	815 aa		13.25	□□□□□ -0.29
LSM4-205	ENST00000597776	GJA5	P36382	358 aa		13.25	□□□□□ -0.29
LSM4-205	ENST00000597776	FBXO33	Q7Z6M2	555 aa		13.25	□□□□□ -0.29
LSM4-205	ENST00000597776	VPS37D	Q86XT2	251 aa		13.25	□□□□□ -0.29
LSM4-205	ENST00000597776	VGLL2	Q8N8G2	317 aa		13.25	□□□□□ -0.29
LSM4-205	ENST00000597776	SERPINA10	Q9UK55	444 aa		13.25	□□□□□ -0.29
LSM4-205	ENST00000597776	MANSC4	A6NHS7	340 aa	Predicted RBP	13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	TCP10L2	B9ZVM9	353 aa		13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	FKTN	O75072	461 aa		13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	USP2	O75604	605 aa	Predicted RBP	13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	ZBTB48	P10074	688 aa	Predicted RBP	13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	CRK	P46108	304 aa		13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	NOM1	Q5C9Z4	860 aa	Known RBP	13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	IFNL1	Q8IU54	200 aa		13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	DZIP1L	Q8IYY4	767 aa	Known RBP	13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	CFHR5	Q9BXR6	569 aa		13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	USP44	Q9H0E7	712 aa		13.24	□□□□□ -0.29
LSM4-205	ENST00000597776	HTT	P42858	3142 aa		13.24	□□□□□ -0.29

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