RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 HNRNPUQ00839 825 aaKnown RBP eCLIP15.81■□□□□ 0.12
UPF1-203ENST00000594504 PTPN12Q05209 780 aaKnown RBP15.81■□□□□ 0.12
UPF1-203ENST00000594504 CCDC57Q2TAC2 916 aa15.81■□□□□ 0.12
UPF1-203ENST00000594504 C9orf78Q9NZ63 289 aaPredicted RBP15.81■□□□□ 0.12
UPF1-203ENST00000594504 MLLT1Q03111 559 aaPredicted RBP15.8■□□□□ 0.12
UPF1-203ENST00000594504 TAF7LQ5H9L4 462 aa15.8■□□□□ 0.12
UPF1-203ENST00000594504 LDHAL6AQ6ZMR3 332 aa15.8■□□□□ 0.12
UPF1-203ENST00000594504 C15orf52Q6ZUT6 534 aaKnown RBP15.8■□□□□ 0.12
UPF1-203ENST00000594504 CDCA7LQ96GN5 454 aa15.8■□□□□ 0.12
UPF1-203ENST00000594504 SUCLG2Q96I99 432 aa15.8■□□□□ 0.12
UPF1-203ENST00000594504 PUS3Q9BZE2 481 aaKnown RBP15.8■□□□□ 0.12
UPF1-203ENST00000594504 CNNM1Q9NRU3 951 aa15.8■□□□□ 0.12
UPF1-203ENST00000594504 AOX1Q06278 1338 aa15.79■□□□□ 0.12
UPF1-203ENST00000594504 IL1R1P14778 569 aa15.79■□□□□ 0.12
UPF1-203ENST00000594504 NF2P35240 595 aa15.79■□□□□ 0.12
UPF1-203ENST00000594504 DLGAP5Q15398 846 aa15.79■□□□□ 0.12
UPF1-203ENST00000594504 TRMT2AQ8IZ69 625 aaKnown RBP15.79■□□□□ 0.12
UPF1-203ENST00000594504 KAZALD1Q96I82 304 aa15.79■□□□□ 0.12
UPF1-203ENST00000594504 PRMT6Q96LA8 375 aaPredicted RBP15.79■□□□□ 0.12
UPF1-203ENST00000594504 SRCIN1Q9C0H9 1055 aa15.79■□□□□ 0.12
UPF1-203ENST00000594504 CLRN2A0PK11 232 aa15.78■□□□□ 0.12
UPF1-203ENST00000594504 ALDH1L1O75891 902 aa15.78■□□□□ 0.12
UPF1-203ENST00000594504 NBPF7P0C2Y1 421 aaPredicted RBP15.78■□□□□ 0.12
UPF1-203ENST00000594504 CFAP100Q494V2 611 aa15.78■□□□□ 0.12
UPF1-203ENST00000594504 ARMC9Q7Z3E5 817 aa15.78■□□□□ 0.12
UPF1-203ENST00000594504 ZNF804AQ7Z570 1209 aa15.78■□□□□ 0.12
UPF1-203ENST00000594504 APOBEC3FQ8IUX4 373 aaKnown RBP15.78■□□□□ 0.12
UPF1-203ENST00000594504 REM2Q8IYK8 340 aaPredicted RBP15.78■□□□□ 0.12
UPF1-203ENST00000594504 ANGEL1Q9UNK9 670 aaKnown RBP15.78■□□□□ 0.12
UPF1-203ENST00000594504 GYG1P46976 350 aa15.77■□□□□ 0.12
UPF1-203ENST00000594504 TM4SF4P48230 202 aa15.77■□□□□ 0.12
UPF1-203ENST00000594504 MMP14P50281 582 aa15.77■□□□□ 0.12
UPF1-203ENST00000594504 DEFB129Q9H1M3 183 aa15.77■□□□□ 0.12
UPF1-203ENST00000594504 LDLRAD1Q5T700 205 aa15.76■□□□□ 0.11
UPF1-203ENST00000594504 MRPL50Q8N5N7 158 aaKnown RBP15.76■□□□□ 0.11
UPF1-203ENST00000594504 R3HDMLQ9H3Y0 253 aa15.76■□□□□ 0.11
UPF1-203ENST00000594504 RBM5P52756 815 aaKnown RBP eCLIP15.75■□□□□ 0.11
UPF1-203ENST00000594504 SOX10P56693 466 aa15.75■□□□□ 0.11
UPF1-203ENST00000594504 CTU1Q7Z7A3 348 aaKnown RBP15.75■□□□□ 0.11
UPF1-203ENST00000594504 MTMR14Q8NCE2 650 aa15.75■□□□□ 0.11
UPF1-203ENST00000594504 ZNF296Q8WUU4 475 aaPredicted RBP15.75■□□□□ 0.11
UPF1-203ENST00000594504 FAM84BQ96KN1 310 aaPredicted RBP15.75■□□□□ 0.11
UPF1-203ENST00000594504 VEZTQ9HBM0 779 aa15.75■□□□□ 0.11
UPF1-203ENST00000594504 ZBED9Q6R2W3 1325 aa15.74■□□□□ 0.11
UPF1-203ENST00000594504 SPDYE2BA6NHP3 402 aa15.74■□□□□ 0.11
UPF1-203ENST00000594504 CT47B1P0C2W7 299 aaPredicted RBP15.74■□□□□ 0.11
UPF1-203ENST00000594504 SPDYE6P0CI01 402 aa15.74■□□□□ 0.11
UPF1-203ENST00000594504 FKBP1AP62942 108 aaKnown RBP15.74■□□□□ 0.11
UPF1-203ENST00000594504 LRRC24Q50LG9 513 aa15.74■□□□□ 0.11
UPF1-203ENST00000594504 NBPF12Q5TAG4 269 aaPredicted RBP15.74■□□□□ 0.11
UPF1-203ENST00000594504 SPRYD7Q5W111 196 aa15.74■□□□□ 0.11
UPF1-203ENST00000594504 TDRD7Q8NHU6 1098 aaKnown RBP15.74■□□□□ 0.11
UPF1-203ENST00000594504 CLMNQ96JQ2 1002 aa15.74■□□□□ 0.11
UPF1-203ENST00000594504 BICC1Q9H694 974 aaKnown RBP15.74■□□□□ 0.11
UPF1-203ENST00000594504 RIPOR2Q9Y4F9 1068 aa15.74■□□□□ 0.11
UPF1-203ENST00000594504 ECM29Q5VYK3 1845 aa15.73■□□□□ 0.11
UPF1-203ENST00000594504 HIBADHP31937 336 aaKnown RBP15.73■□□□□ 0.11
UPF1-203ENST00000594504 UBE4AQ14139 1066 aa15.73■□□□□ 0.11
UPF1-203ENST00000594504 SLC10A4Q96EP9 437 aa15.73■□□□□ 0.11
UPF1-203ENST00000594504 IQSEC3Q9UPP2 1182 aaPredicted RBP15.73■□□□□ 0.11
UPF1-203ENST00000594504 FAM205AQ6ZU69 1335 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 SSC5DA1L4H1 1573 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 GPR25O00155 361 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 MYO1BO43795 1136 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 USP2O75604 605 aaPredicted RBP15.72■□□□□ 0.11
UPF1-203ENST00000594504 GRIK5Q16478 980 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 MFSD14BQ5SR56 506 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 ANKRD44Q8N8A2 993 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 KLHDC4Q8TBB5 520 aa15.72■□□□□ 0.11
UPF1-203ENST00000594504 TDRD3Q9H7E2 651 aaKnown RBP15.72■□□□□ 0.11
UPF1-203ENST00000594504 TTF2Q9UNY4 1162 aaKnown RBP15.72■□□□□ 0.11
UPF1-203ENST00000594504 UTYO14607 1347 aa15.71■□□□□ 0.11
UPF1-203ENST00000594504 RASA3Q14644 834 aa15.71■□□□□ 0.11
UPF1-203ENST00000594504 MAP3K11Q16584 847 aa15.71■□□□□ 0.11
UPF1-203ENST00000594504 SSH1Q8WYL5 1049 aa15.71■□□□□ 0.11
UPF1-203ENST00000594504 PPP1R12BO60237 982 aaPredicted RBP15.7■□□□□ 0.1
UPF1-203ENST00000594504 SREBF2Q12772 1141 aa15.7■□□□□ 0.1
UPF1-203ENST00000594504 ALDH1L2Q3SY69 923 aa15.7■□□□□ 0.1
UPF1-203ENST00000594504 RABL6Q3YEC7 729 aaPredicted RBP15.7■□□□□ 0.1
UPF1-203ENST00000594504 WNK4Q96J92 1243 aa15.7■□□□□ 0.1
UPF1-203ENST00000594504 ZNF70Q9UC06 446 aaPredicted RBP15.7■□□□□ 0.1
UPF1-203ENST00000594504 HPS5Q9UPZ3 1129 aa15.7■□□□□ 0.1
UPF1-203ENST00000594504 PPP2R3BQ9Y5P8 575 aa15.7■□□□□ 0.1
UPF1-203ENST00000594504 COL1A1P02452 1464 aaPredicted RBP15.7■□□□□ 0.1
UPF1-203ENST00000594504 GJA5P36382 358 aa15.69■□□□□ 0.1
UPF1-203ENST00000594504 CHAF1AQ13111 956 aaPredicted RBP15.69■□□□□ 0.1
UPF1-203ENST00000594504 SUPT20HL1Q3ZLR7 823 aa15.69■□□□□ 0.1
UPF1-203ENST00000594504 METTL24Q5JXM2 366 aa15.69■□□□□ 0.1
UPF1-203ENST00000594504 FBXO33Q7Z6M2 555 aa15.69■□□□□ 0.1
UPF1-203ENST00000594504 CDAN1Q8IWY9 1227 aa15.69■□□□□ 0.1
UPF1-203ENST00000594504 USP44Q9H0E7 712 aa15.69■□□□□ 0.1
UPF1-203ENST00000594504 MROH5Q6ZUA9 1318 aa15.68■□□□□ 0.1
UPF1-203ENST00000594504 TCP10L2B9ZVM9 353 aa15.68■□□□□ 0.1
UPF1-203ENST00000594504 FKTNO75072 461 aa15.68■□□□□ 0.1
UPF1-203ENST00000594504 SPDYE2Q495Y8 402 aa15.68■□□□□ 0.1
UPF1-203ENST00000594504 IFNL1Q8IU54 200 aa15.68■□□□□ 0.1
UPF1-203ENST00000594504 DZIP1LQ8IYY4 767 aaKnown RBP15.68■□□□□ 0.1
UPF1-203ENST00000594504 MANSC4A6NHS7 340 aaPredicted RBP15.67■□□□□ 0.1
UPF1-203ENST00000594504 IGF2BP3O00425 579 aaKnown RBP eCLIP15.67■□□□□ 0.1
UPF1-203ENST00000594504 CRKP46108 304 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms