RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SRCIN1Q9C0H9 1055 aa30.3■■■□□ 2.44
LSM4-202ENST00000593564 COL1A1P02452 1464 aaPredicted RBP30.3■■■□□ 2.44
LSM4-202ENST00000593564 ARMC9Q7Z3E5 817 aa30.29■■■□□ 2.44
LSM4-202ENST00000593564 SLC4A10Q6U841 1118 aa30.28■■■□□ 2.44
LSM4-202ENST00000593564 CNNM1Q9NRU3 951 aa30.28■■■□□ 2.44
LSM4-202ENST00000593564 ZNF521Q96K83 1311 aa30.26■■■□□ 2.44
LSM4-202ENST00000593564 TM4SF4P48230 202 aa30.26■■■□□ 2.43
LSM4-202ENST00000593564 PTPN12Q05209 780 aaKnown RBP30.26■■■□□ 2.43
LSM4-202ENST00000593564 DEFB129Q9H1M3 183 aa30.26■■■□□ 2.43
LSM4-202ENST00000593564 PLIN1O60240 522 aa30.25■■■□□ 2.43
LSM4-202ENST00000593564 LDLRAD1Q5T700 205 aa30.25■■■□□ 2.43
LSM4-202ENST00000593564 CTU1Q7Z7A3 348 aaKnown RBP30.25■■■□□ 2.43
LSM4-202ENST00000593564 PRKG1Q13976 671 aa30.24■■■□□ 2.43
LSM4-202ENST00000593564 SUCLG2Q96I99 432 aa30.24■■■□□ 2.43
LSM4-202ENST00000593564 PPP2R3BQ9Y5P8 575 aa30.24■■■□□ 2.43
LSM4-202ENST00000593564 SPDYE2BA6NHP3 402 aa30.23■■■□□ 2.43
LSM4-202ENST00000593564 F8W031 263 aaPredicted RBP30.23■■■□□ 2.43
LSM4-202ENST00000593564 SPDYE6P0CI01 402 aa30.23■■■□□ 2.43
LSM4-202ENST00000593564 UBE4AQ14139 1066 aa30.23■■■□□ 2.43
LSM4-202ENST00000593564 CFAP100Q494V2 611 aa30.23■■■□□ 2.43
LSM4-202ENST00000593564 KAZALD1Q96I82 304 aa30.23■■■□□ 2.43
LSM4-202ENST00000593564 ANGEL1Q9UNK9 670 aaKnown RBP30.23■■■□□ 2.43
LSM4-202ENST00000593564 PCDHAC2Q9Y5I4 1007 aa30.23■■■□□ 2.43
LSM4-202ENST00000593564 MYO1BO43795 1136 aa30.22■■■□□ 2.43
LSM4-202ENST00000593564 MKRN3Q13064 507 aaKnown RBP30.22■■■□□ 2.43
LSM4-202ENST00000593564 UTYO14607 1347 aa30.22■■■□□ 2.43
LSM4-202ENST00000593564 SREBF2Q12772 1141 aa30.21■■■□□ 2.43
LSM4-202ENST00000593564 JAG2Q9Y219 1238 aa30.21■■■□□ 2.43
LSM4-202ENST00000593564 FAM205AQ6ZU69 1335 aa30.21■■■□□ 2.43
LSM4-202ENST00000593564 TBC1D8O95759 1140 aa30.2■■■□□ 2.43
LSM4-202ENST00000593564 NBPF7P0C2Y1 421 aaPredicted RBP30.2■■■□□ 2.43
LSM4-202ENST00000593564 MAP3K11Q16584 847 aa30.2■■■□□ 2.43
LSM4-202ENST00000593564 PRMT6Q96LA8 375 aaPredicted RBP30.2■■■□□ 2.43
LSM4-202ENST00000593564 NOM1Q5C9Z4 860 aaKnown RBP30.19■■■□□ 2.42
LSM4-202ENST00000593564 SPRYD7Q5W111 196 aa30.19■■■□□ 2.42
LSM4-202ENST00000593564 TDRD7Q8NHU6 1098 aaKnown RBP30.19■■■□□ 2.42
LSM4-202ENST00000593564 SSC5DA1L4H1 1573 aa30.19■■■□□ 2.42
LSM4-202ENST00000593564 CLRN2A0PK11 232 aa30.18■■■□□ 2.42
LSM4-202ENST00000593564 ZNF296Q8WUU4 475 aaPredicted RBP30.18■■■□□ 2.42
LSM4-202ENST00000593564 PUS3Q9BZE2 481 aaKnown RBP30.18■■■□□ 2.42
LSM4-202ENST00000593564 FZD1Q9UP38 647 aa30.18■■■□□ 2.42
LSM4-202ENST00000593564 ECM29Q5VYK3 1845 aa30.17■■■□□ 2.42
LSM4-202ENST00000593564 PPP1R12BO60237 982 aaPredicted RBP30.17■■■□□ 2.42
LSM4-202ENST00000593564 HIBADHP31937 336 aaKnown RBP30.17■■■□□ 2.42
LSM4-202ENST00000593564 RABL6Q3YEC7 729 aaPredicted RBP30.17■■■□□ 2.42
LSM4-202ENST00000593564 MRPL50Q8N5N7 158 aaKnown RBP30.17■■■□□ 2.42
LSM4-202ENST00000593564 FAM84BQ96KN1 310 aaPredicted RBP30.17■■■□□ 2.42
LSM4-202ENST00000593564 CFHR5Q9BXR6 569 aa30.17■■■□□ 2.42
LSM4-202ENST00000593564 RIPOR2Q9Y4F9 1068 aa30.17■■■□□ 2.42
LSM4-202ENST00000593564 GYG1P46976 350 aa30.16■■■□□ 2.42
LSM4-202ENST00000593564 SUPT20HL1Q3ZLR7 823 aa30.16■■■□□ 2.42
LSM4-202ENST00000593564 MFSD14BQ5SR56 506 aa30.16■■■□□ 2.42
LSM4-202ENST00000593564 VEZTQ9HBM0 779 aa30.16■■■□□ 2.42
LSM4-202ENST00000593564 AOX1Q06278 1338 aa30.16■■■□□ 2.42
LSM4-202ENST00000593564 MROH5Q6ZUA9 1318 aa30.16■■■□□ 2.42
LSM4-202ENST00000593564 UNCXA6NJT0 531 aa30.15■■■□□ 2.42
LSM4-202ENST00000593564 RBM5P52756 815 aaKnown RBP eCLIP30.15■■■□□ 2.42
LSM4-202ENST00000593564 PKN2Q16513 984 aaKnown RBP30.15■■■□□ 2.42
LSM4-202ENST00000593564 BICC1Q9H694 974 aaKnown RBP30.15■■■□□ 2.42
LSM4-202ENST00000593564 GPR25O00155 361 aa30.14■■■□□ 2.42
LSM4-202ENST00000593564 SLC10A4Q96EP9 437 aa30.14■■■□□ 2.42
LSM4-202ENST00000593564 SERPINA10Q9UK55 444 aa30.14■■■□□ 2.42
LSM4-202ENST00000593564 PTPRCP08575 1304 aa30.14■■■□□ 2.42
LSM4-202ENST00000593564 ANKRD44Q8N8A2 993 aa30.13■■■□□ 2.41
LSM4-202ENST00000593564 E9PSI1 815 aa30.12■■■□□ 2.41
LSM4-202ENST00000593564 ZBTB48P10074 688 aaPredicted RBP30.12■■■□□ 2.41
LSM4-202ENST00000593564 RASA3Q14644 834 aa30.12■■■□□ 2.41
LSM4-202ENST00000593564 NBPF12Q5TAG4 269 aaPredicted RBP30.12■■■□□ 2.41
LSM4-202ENST00000593564 TTF2Q9UNY4 1162 aaKnown RBP30.12■■■□□ 2.41
LSM4-202ENST00000593564 MANSC4A6NHS7 340 aaPredicted RBP30.11■■■□□ 2.41
LSM4-202ENST00000593564 ALDH1A1P00352 501 aa30.11■■■□□ 2.41
LSM4-202ENST00000593564 INHBEP58166 350 aa30.11■■■□□ 2.41
LSM4-202ENST00000593564 SPDYE2Q495Y8 402 aa30.11■■■□□ 2.41
LSM4-202ENST00000593564 WNK4Q96J92 1243 aa30.11■■■□□ 2.41
LSM4-202ENST00000593564 CLMNQ96JQ2 1002 aa30.11■■■□□ 2.41
LSM4-202ENST00000593564 SOX10P56693 466 aa30.1■■■□□ 2.41
LSM4-202ENST00000593564 TNFAIP1Q13829 316 aa30.1■■■□□ 2.41
LSM4-202ENST00000593564 FBXO33Q7Z6M2 555 aa30.1■■■□□ 2.41
LSM4-202ENST00000593564 HPS5Q9UPZ3 1129 aa30.1■■■□□ 2.41
LSM4-202ENST00000593564 IREB2P48200 963 aaKnown RBP30.09■■■□□ 2.41
LSM4-202ENST00000593564 LRRC24Q50LG9 513 aa30.09■■■□□ 2.41
LSM4-202ENST00000593564 SSH1Q8WYL5 1049 aa30.09■■■□□ 2.41
LSM4-202ENST00000593564 ZNF70Q9UC06 446 aaPredicted RBP30.09■■■□□ 2.41
LSM4-202ENST00000593564 METTL24Q5JXM2 366 aa30.08■■■□□ 2.41
LSM4-202ENST00000593564 VPS37DQ86XT2 251 aa30.08■■■□□ 2.41
LSM4-202ENST00000593564 R3HDMLQ9H3Y0 253 aa30.08■■■□□ 2.41
LSM4-202ENST00000593564 ARAP2Q8WZ64 1704 aa30.08■■■□□ 2.41
LSM4-202ENST00000593564 FKTNO75072 461 aa30.07■■■□□ 2.4
LSM4-202ENST00000593564 USP2O75604 605 aaPredicted RBP30.07■■■□□ 2.4
LSM4-202ENST00000593564 IFNL1Q8IU54 200 aa30.07■■■□□ 2.4
LSM4-202ENST00000593564 DZIP1LQ8IYY4 767 aaKnown RBP30.07■■■□□ 2.4
LSM4-202ENST00000593564 VGLL2Q8N8G2 317 aa30.07■■■□□ 2.4
LSM4-202ENST00000593564 CAVIN4Q5BKX8 364 aa30.06■■■□□ 2.4
LSM4-202ENST00000593564 USP44Q9H0E7 712 aa30.06■■■□□ 2.4
LSM4-202ENST00000593564 TDRD3Q9H7E2 651 aaKnown RBP30.06■■■□□ 2.4
LSM4-202ENST00000593564 TNRC18O15417 2968 aaPredicted RBP30.05■■■□□ 2.4
LSM4-202ENST00000593564 PDE8BO95263 885 aa30.05■■■□□ 2.4
LSM4-202ENST00000593564 CRKP46108 304 aa30.05■■■□□ 2.4
LSM4-202ENST00000593564 SLFN5Q08AF3 891 aa30.05■■■□□ 2.4
LSM4-202ENST00000593564 ANKRD13AQ8IZ07 590 aa30.05■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms