RNA–Protein interactions for RNA: ENST00000590830.5

MBD3-208, Transcript of methyl-CpG binding domain protein 3, human

TSL 1 (best)

Gene MBD3, Length 1,035 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD3-208	ENST00000590830	ADM5	C9JUS6	153 aa		27.83	■■■□□ 2.05
MBD3-208	ENST00000590830	IL15	P40933	162 aa	Predicted RBP	27.83	■■■□□ 2.05
MBD3-208	ENST00000590830	KRT26	Q7Z3Y9	468 aa		27.83	■■■□□ 2.05
MBD3-208	ENST00000590830	DCPS	Q96C86	337 aa	Known RBP	27.83	■■■□□ 2.05
MBD3-208	ENST00000590830	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	27.83	■■■□□ 2.05
MBD3-208	ENST00000590830	FKBP1A	P62942	108 aa	Known RBP	27.82	■■■□□ 2.04
MBD3-208	ENST00000590830	ANGEL2	Q5VTE6	544 aa	Known RBP	27.82	■■■□□ 2.04
MBD3-208	ENST00000590830	LPIN2	Q92539	896 aa		27.82	■■■□□ 2.04
MBD3-208	ENST00000590830	CEP126	Q9P2H0	1117 aa		27.82	■■■□□ 2.04
MBD3-208	ENST00000590830	CELF2	O95319	508 aa	Known RBP	27.81	■■■□□ 2.04
MBD3-208	ENST00000590830	IFIT1	P09914	478 aa	Known RBP	27.81	■■■□□ 2.04
MBD3-208	ENST00000590830	CAVIN4	Q5BKX8	364 aa		27.81	■■■□□ 2.04
MBD3-208	ENST00000590830	ZBED3	Q96IU2	234 aa	Predicted RBP	27.81	■■■□□ 2.04
MBD3-208	ENST00000590830	C1orf115	Q9H7X2	142 aa		27.81	■■■□□ 2.04
MBD3-208	ENST00000590830	WNT10B	O00744	389 aa		27.8	■■■□□ 2.04
MBD3-208	ENST00000590830	MMP14	P50281	582 aa		27.8	■■■□□ 2.04
MBD3-208	ENST00000590830	VPS37D	Q86XT2	251 aa		27.8	■■■□□ 2.04
MBD3-208	ENST00000590830	SCAF8	Q9UPN6	1271 aa	Known RBP	27.8	■■■□□ 2.04
MBD3-208	ENST00000590830	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	27.8	■■■□□ 2.04
MBD3-208	ENST00000590830	CNTNAP1	P78357	1384 aa		27.8	■■■□□ 2.04
MBD3-208	ENST00000590830		F8W031	263 aa	Predicted RBP	27.79	■■■□□ 2.04
MBD3-208	ENST00000590830	SLC5A1	P13866	664 aa		27.79	■■■□□ 2.04
MBD3-208	ENST00000590830	PCDHAC2	Q9Y5I4	1007 aa		27.79	■■■□□ 2.04
MBD3-208	ENST00000590830	RASSF10	A6NK89	507 aa		27.78	■■■□□ 2.04
MBD3-208	ENST00000590830	ATP8B2	P98198	1209 aa		27.78	■■■□□ 2.04
MBD3-208	ENST00000590830	GRIK5	Q16478	980 aa		27.78	■■■□□ 2.04
MBD3-208	ENST00000590830	ATP2B3	Q16720	1220 aa		27.78	■■■□□ 2.04
MBD3-208	ENST00000590830	HDAC9	Q9UKV0	1011 aa		27.78	■■■□□ 2.04
MBD3-208	ENST00000590830	ABT1	Q9ULW3	272 aa	Known RBP	27.78	■■■□□ 2.04
MBD3-208	ENST00000590830	POLR2A	P24928	1970 aa	Known RBP	27.77	■■■□□ 2.04
MBD3-208	ENST00000590830	POLA2	Q14181	598 aa		27.77	■■■□□ 2.04
MBD3-208	ENST00000590830	MFSD14B	Q5SR56	506 aa		27.77	■■■□□ 2.04
MBD3-208	ENST00000590830	ZNF408	Q9H9D4	720 aa		27.77	■■■□□ 2.04
MBD3-208	ENST00000590830	VEGFB	P49765	207 aa		27.76	■■■□□ 2.03
MBD3-208	ENST00000590830	TFCP2	Q12800	502 aa		27.76	■■■□□ 2.03
MBD3-208	ENST00000590830	CHAF1A	Q13111	956 aa	Predicted RBP	27.76	■■■□□ 2.03
MBD3-208	ENST00000590830	DEFB115	Q30KQ5	88 aa		27.76	■■■□□ 2.03
MBD3-208	ENST00000590830	SULF1	Q8IWU6	871 aa		27.76	■■■□□ 2.03
MBD3-208	ENST00000590830	TLL2	Q9Y6L7	1015 aa		27.76	■■■□□ 2.03
MBD3-208	ENST00000590830	PITPNM2	Q9BZ72	1349 aa		27.75	■■■□□ 2.03
MBD3-208	ENST00000590830	PCNT	O95613	3336 aa		27.75	■■■□□ 2.03
MBD3-208	ENST00000590830	MTMR14	Q8NCE2	650 aa		27.75	■■■□□ 2.03
MBD3-208	ENST00000590830	SSH3	Q8TE77	659 aa		27.75	■■■□□ 2.03
MBD3-208	ENST00000590830	ADORA1	P30542	326 aa		27.74	■■■□□ 2.03
MBD3-208	ENST00000590830	TIMM10	P62072	90 aa		27.74	■■■□□ 2.03
MBD3-208	ENST00000590830	AOX1	Q06278	1338 aa		27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	TRPM7	Q96QT4	1865 aa		27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	FRAT2	O75474	233 aa	Predicted RBP	27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	DLGAP5	Q15398	846 aa		27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	CFAP100	Q494V2	611 aa		27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	SAPCD2	Q86UD0	394 aa		27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	CDCA5	Q96FF9	252 aa		27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	PRMT6	Q96LA8	375 aa	Predicted RBP	27.73	■■■□□ 2.03
MBD3-208	ENST00000590830	MS4A1	P11836	297 aa		27.72	■■■□□ 2.03
MBD3-208	ENST00000590830	TTF2	Q9UNY4	1162 aa	Known RBP	27.72	■■■□□ 2.03
MBD3-208	ENST00000590830	COG6	Q9Y2V7	657 aa		27.72	■■■□□ 2.03
MBD3-208	ENST00000590830	PHKA1	P46020	1223 aa		27.71	■■■□□ 2.03
MBD3-208	ENST00000590830	SPDYE2B	A6NHP3	402 aa		27.7	■■■□□ 2.02
MBD3-208	ENST00000590830	SPDYE6	P0CI01	402 aa		27.7	■■■□□ 2.02
MBD3-208	ENST00000590830	G3BP1	Q13283	466 aa	Known RBP eCLIP	27.7	■■■□□ 2.02
MBD3-208	ENST00000590830	MVP	Q14764	893 aa	Known RBP	27.7	■■■□□ 2.02
MBD3-208	ENST00000590830	C20orf194	Q5TEA3	1177 aa		27.7	■■■□□ 2.02
MBD3-208	ENST00000590830	PRAMEF18	Q5VWM3	479 aa		27.7	■■■□□ 2.02
MBD3-208	ENST00000590830	CEP85	Q6P2H3	762 aa		27.69	■■■□□ 2.02
MBD3-208	ENST00000590830	TBC1D22A	Q8WUA7	517 aa		27.69	■■■□□ 2.02
MBD3-208	ENST00000590830	COL1A1	P02452	1464 aa	Predicted RBP	27.69	■■■□□ 2.02
MBD3-208	ENST00000590830		A0A1B0GUL7	405 aa		27.68	■■■□□ 2.02
MBD3-208	ENST00000590830	CYP4F22	Q6NT55	531 aa		27.68	■■■□□ 2.02
MBD3-208	ENST00000590830	YTHDC1	Q96MU7	727 aa	Known RBP	27.68	■■■□□ 2.02
MBD3-208	ENST00000590830	WDR33	Q9C0J8	1336 aa	Known RBP	27.67	■■■□□ 2.02
MBD3-208	ENST00000590830	CCDC102B	Q68D86	513 aa		27.67	■■■□□ 2.02
MBD3-208	ENST00000590830	XAGE2	Q96GT9	111 aa		27.67	■■■□□ 2.02
MBD3-208	ENST00000590830	GBA2	Q9HCG7	927 aa	Predicted RBP	27.67	■■■□□ 2.02
MBD3-208	ENST00000590830	SERPINA10	Q9UK55	444 aa		27.67	■■■□□ 2.02
MBD3-208	ENST00000590830	AKAP2	Q9Y2D5	859 aa		27.67	■■■□□ 2.02
MBD3-208	ENST00000590830	RBM5	P52756	815 aa	Known RBP eCLIP	27.66	■■■□□ 2.02
MBD3-208	ENST00000590830	CAPNS2	Q96L46	248 aa		27.66	■■■□□ 2.02
MBD3-208	ENST00000590830	ZBTB40	Q9NUA8	1239 aa		27.66	■■■□□ 2.02
MBD3-208	ENST00000590830	NOP58	Q9Y2X3	529 aa	Known RBP	27.66	■■■□□ 2.02
MBD3-208	ENST00000590830	CLRN2	A0PK11	232 aa		27.65	■■■□□ 2.02
MBD3-208	ENST00000590830	SURF6	O75683	361 aa	Known RBP	27.65	■■■□□ 2.02
MBD3-208	ENST00000590830	CRK	P46108	304 aa		27.65	■■■□□ 2.02
MBD3-208	ENST00000590830	ZBTB22	O15209	634 aa		27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	HUNK	P57058	714 aa		27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	APOBEC3F	Q8IUX4	373 aa	Known RBP	27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	C2orf69	Q8N8R5	385 aa		27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	WDR66	Q8TBY9	1149 aa		27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	HHIPL1	Q96JK4	782 aa		27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	NEUROD6	Q96NK8	337 aa		27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	GNL3L	Q9NVN8	582 aa	Known RBP	27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	DDX19B	Q9UMR2	479 aa		27.64	■■■□□ 2.02
MBD3-208	ENST00000590830	PDE3A	Q14432	1141 aa		27.63	■■■□□ 2.01
MBD3-208	ENST00000590830	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	27.63	■■■□□ 2.01
MBD3-208	ENST00000590830	HDLBP	Q00341	1268 aa	Known RBP	27.62	■■■□□ 2.01
MBD3-208	ENST00000590830	GRM1	Q13255	1194 aa		27.62	■■■□□ 2.01
MBD3-208	ENST00000590830	MOB2	Q70IA6	237 aa		27.62	■■■□□ 2.01
MBD3-208	ENST00000590830	MRI	Q9BWK5	157 aa		27.62	■■■□□ 2.01
MBD3-208	ENST00000590830	DEFB129	Q9H1M3	183 aa		27.62	■■■□□ 2.01
MBD3-208	ENST00000590830	SUGT1	Q9Y2Z0	365 aa		27.62	■■■□□ 2.01
MBD3-208	ENST00000590830	SEMA3E	O15041	775 aa		27.61	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms