RNA–Protein interactions for RNA: ENST00000587220.5

ZNF540-205, Transcript of zinc finger protein 540, humanhuman

TSL 2

Gene ZNF540, Length 576 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-205ENST00000587220 UBE4AQ14139 1066 aa13.38□□□□□ -0.27
ZNF540-205ENST00000587220 METTL24Q5JXM2 366 aa13.38□□□□□ -0.27
ZNF540-205ENST00000587220 PRAMEF18Q5VWM3 479 aa13.38□□□□□ -0.27
ZNF540-205ENST00000587220 VPS37DQ86XT2 251 aa13.38□□□□□ -0.27
ZNF540-205ENST00000587220 PUS3Q9BZE2 481 aaKnown RBP13.38□□□□□ -0.27
ZNF540-205ENST00000587220 FAM155AB1AL88 458 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-205ENST00000587220 SLC10A3P09131 477 aa13.37□□□□□ -0.27
ZNF540-205ENST00000587220 CT47B1P0C2W7 299 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-205ENST00000587220 HIBADHP31937 336 aaKnown RBP13.37□□□□□ -0.27
ZNF540-205ENST00000587220 GYG1P46976 350 aa13.37□□□□□ -0.27
ZNF540-205ENST00000587220 RBM5P52756 815 aaKnown RBP eCLIP13.37□□□□□ -0.27
ZNF540-205ENST00000587220 KIF23Q02241 960 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-205ENST00000587220 RABL6Q3YEC7 729 aaPredicted RBP13.37□□□□□ -0.27
ZNF540-205ENST00000587220 CERS5Q8N5B7 392 aa13.37□□□□□ -0.27
ZNF540-205ENST00000587220 ZIC5Q96T25 663 aa13.37□□□□□ -0.27
ZNF540-205ENST00000587220 FRAT2O75474 233 aaPredicted RBP13.36□□□□□ -0.27
ZNF540-205ENST00000587220 FKBP1AP62942 108 aaKnown RBP13.36□□□□□ -0.27
ZNF540-205ENST00000587220 CAVIN4Q5BKX8 364 aa13.36□□□□□ -0.27
ZNF540-205ENST00000587220 MOB2Q70IA6 237 aa13.36□□□□□ -0.27
ZNF540-205ENST00000587220 ANKRD44Q8N8A2 993 aa13.36□□□□□ -0.27
ZNF540-205ENST00000587220 USP44Q9H0E7 712 aa13.36□□□□□ -0.27
ZNF540-205ENST00000587220 RIPOR2Q9Y4F9 1068 aa13.36□□□□□ -0.27
ZNF540-205ENST00000587220 UBE2Q2LH0YL09 131 aa13.35□□□□□ -0.27
ZNF540-205ENST00000587220 CFAP100Q494V2 611 aa13.35□□□□□ -0.27
ZNF540-205ENST00000587220 MFSD14BQ5SR56 506 aa13.35□□□□□ -0.27
ZNF540-205ENST00000587220 RASAL3Q86YV0 1011 aa13.35□□□□□ -0.27
ZNF540-205ENST00000587220 REM2Q8IYK8 340 aaPredicted RBP13.35□□□□□ -0.27
ZNF540-205ENST00000587220 TRMT2AQ8IZ69 625 aaKnown RBP13.35□□□□□ -0.27
ZNF540-205ENST00000587220 NOB1Q9ULX3 412 aaKnown RBP13.35□□□□□ -0.27
ZNF540-205ENST00000587220 COL1A1P02452 1464 aaPredicted RBP13.35□□□□□ -0.27
ZNF540-205ENST00000587220 AKAP11Q9UKA4 1901 aa13.35□□□□□ -0.27
ZNF540-205ENST00000587220 ECM29Q5VYK3 1845 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 PDE8BO95263 885 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 UBTFL1P0CB47 393 aaPredicted RBP13.34□□□□□ -0.27
ZNF540-205ENST00000587220 PRKG1Q13976 671 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 LRRC24Q50LG9 513 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 ARMC9Q7Z3E5 817 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 MTMR14Q8NCE2 650 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 TDRD7Q8NHU6 1098 aaKnown RBP13.34□□□□□ -0.27
ZNF540-205ENST00000587220 KLHDC4Q8TBB5 520 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 FAM84BQ96KN1 310 aaPredicted RBP13.34□□□□□ -0.27
ZNF540-205ENST00000587220 API5Q9BZZ5 524 aaKnown RBP13.34□□□□□ -0.27
ZNF540-205ENST00000587220 DEFB129Q9H1M3 183 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 VEZTQ9HBM0 779 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 SAGE1Q9NXZ1 904 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 TTF2Q9UNY4 1162 aaKnown RBP13.34□□□□□ -0.27
ZNF540-205ENST00000587220 HDAC5Q9UQL6 1122 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 FAM205AQ6ZU69 1335 aa13.34□□□□□ -0.27
ZNF540-205ENST00000587220 CLRN2A0PK11 232 aa13.33□□□□□ -0.28
ZNF540-205ENST00000587220 SPDYE2BA6NHP3 402 aa13.33□□□□□ -0.28
ZNF540-205ENST00000587220 TRPA1O75762 1119 aa13.33□□□□□ -0.28
ZNF540-205ENST00000587220 SPDYE6P0CI01 402 aa13.33□□□□□ -0.28
ZNF540-205ENST00000587220 ABHD8Q96I13 439 aa13.33□□□□□ -0.28
ZNF540-205ENST00000587220 ZBED3Q96IU2 234 aaPredicted RBP13.33□□□□□ -0.28
ZNF540-205ENST00000587220 IQSEC3Q9UPP2 1182 aaPredicted RBP13.33□□□□□ -0.28
ZNF540-205ENST00000587220 PPP2R3BQ9Y5P8 575 aa13.33□□□□□ -0.28
ZNF540-205ENST00000587220 IFIT1P09914 478 aaKnown RBP13.32□□□□□ -0.28
ZNF540-205ENST00000587220 CHAF1AQ13111 956 aaPredicted RBP13.32□□□□□ -0.28
ZNF540-205ENST00000587220 PUM3Q15397 648 aaKnown RBP13.32□□□□□ -0.28
ZNF540-205ENST00000587220 PRMT6Q96LA8 375 aaPredicted RBP13.32□□□□□ -0.28
ZNF540-205ENST00000587220 CSRNP1Q96S65 589 aa13.32□□□□□ -0.28
ZNF540-205ENST00000587220 RNF186Q9NXI6 227 aa13.32□□□□□ -0.28
ZNF540-205ENST00000587220 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.32□□□□□ -0.28
ZNF540-205ENST00000587220 SERPINA10Q9UK55 444 aa13.32□□□□□ -0.28
ZNF540-205ENST00000587220 ANGEL1Q9UNK9 670 aaKnown RBP13.32□□□□□ -0.28
ZNF540-205ENST00000587220 PCDHAC2Q9Y5I4 1007 aa13.32□□□□□ -0.28
ZNF540-205ENST00000587220 ARAP2Q8WZ64 1704 aa13.32□□□□□ -0.28
ZNF540-205ENST00000587220 CASP8AP2Q9UKL3 1982 aa13.32□□□□□ -0.28
ZNF540-205ENST00000587220 KIF16BQ96L93 1317 aa13.32□□□□□ -0.28
ZNF540-205ENST00000587220 PPP1R12BO60237 982 aaPredicted RBP13.31□□□□□ -0.28
ZNF540-205ENST00000587220 MKRN3Q13064 507 aaKnown RBP13.31□□□□□ -0.28
ZNF540-205ENST00000587220 TNFAIP1Q13829 316 aa13.31□□□□□ -0.28
ZNF540-205ENST00000587220 SUPT20HL1Q3ZLR7 823 aa13.31□□□□□ -0.28
ZNF540-205ENST00000587220 TBC1D22AQ8WUA7 517 aa13.31□□□□□ -0.28
ZNF540-205ENST00000587220 EYA2O00167 538 aa13.3□□□□□ -0.28
ZNF540-205ENST00000587220 SLC5A1P13866 664 aa13.3□□□□□ -0.28
ZNF540-205ENST00000587220 RARSP54136 660 aaKnown RBP13.3□□□□□ -0.28
ZNF540-205ENST00000587220 DGKZQ13574 1117 aa13.3□□□□□ -0.28
ZNF540-205ENST00000587220 FBXO33Q7Z6M2 555 aa13.3□□□□□ -0.28
ZNF540-205ENST00000587220 VGLL2Q8N8G2 317 aa13.3□□□□□ -0.28
ZNF540-205ENST00000587220 SIL1Q9H173 461 aa13.3□□□□□ -0.28
ZNF540-205ENST00000587220 CCDC85CA6NKD9 419 aa13.29□□□□□ -0.28
ZNF540-205ENST00000587220 CRKP46108 304 aa13.29□□□□□ -0.28
ZNF540-205ENST00000587220 BCAMP50895 628 aa13.29□□□□□ -0.28
ZNF540-205ENST00000587220 PTPN12Q05209 780 aaKnown RBP13.29□□□□□ -0.28
ZNF540-205ENST00000587220 SREBF2Q12772 1141 aa13.29□□□□□ -0.28
ZNF540-205ENST00000587220 RASA3Q14644 834 aa13.29□□□□□ -0.28
ZNF540-205ENST00000587220 TDRD3Q9H7E2 651 aaKnown RBP13.29□□□□□ -0.28
ZNF540-205ENST00000587220 IPO8O15397 1037 aaKnown RBP13.28□□□□□ -0.28
ZNF540-205ENST00000587220 TNNI2P48788 182 aa13.28□□□□□ -0.28
ZNF540-205ENST00000587220 SPDYE2Q495Y8 402 aa13.28□□□□□ -0.28
ZNF540-205ENST00000587220 DZIP1LQ8IYY4 767 aaKnown RBP13.28□□□□□ -0.28
ZNF540-205ENST00000587220 LPIN2Q92539 896 aa13.28□□□□□ -0.28
ZNF540-205ENST00000587220 ARHGAP45Q92619 1136 aa13.28□□□□□ -0.28
ZNF540-205ENST00000587220 FRAT1Q92837 279 aaPredicted RBP13.28□□□□□ -0.28
ZNF540-205ENST00000587220 TEKT1Q969V4 418 aa13.28□□□□□ -0.28
ZNF540-205ENST00000587220 SLC10A4Q96EP9 437 aa13.28□□□□□ -0.28
ZNF540-205ENST00000587220 MCOLN1Q9GZU1 580 aa13.28□□□□□ -0.28
ZNF540-205ENST00000587220 ZNF70Q9UC06 446 aaPredicted RBP13.28□□□□□ -0.28
ZNF540-205ENST00000587220 FZD1Q9UP38 647 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms