RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 DLGAP5Q15398 846 aa15.07■□□□□ 0
LIG3-209ENST00000586435 MAP3K11Q16584 847 aa15.07■□□□□ 0
LIG3-209ENST00000586435 SSC5DA1L4H1 1573 aa15.07■□□□□ 0
LIG3-209ENST00000586435 CCDC57Q2TAC2 916 aa15.06■□□□□ 0
LIG3-209ENST00000586435 LMBR1LQ6UX01 489 aa15.06■□□□□ 0
LIG3-209ENST00000586435 HELBQ8NG08 1087 aaPredicted RBP15.06■□□□□ 0
LIG3-209ENST00000586435 ZNF296Q8WUU4 475 aaPredicted RBP15.06■□□□□ 0
LIG3-209ENST00000586435 DEFB129Q9H1M3 183 aa15.06■□□□□ 0
LIG3-209ENST00000586435 SPINK5Q9NQ38 1064 aaPredicted RBP15.06■□□□□ 0
LIG3-209ENST00000586435 CHMP3Q9Y3E7 222 aa15.06■□□□□ 0
LIG3-209ENST00000586435 SPDYE2BA6NHP3 402 aa15.05■□□□□ -0
LIG3-209ENST00000586435 UNCXA6NJT0 531 aa15.05■□□□□ -0
LIG3-209ENST00000586435 ALDH1L1O75891 902 aa15.05■□□□□ -0
LIG3-209ENST00000586435 TBC1D8O95759 1140 aa15.05■□□□□ -0
LIG3-209ENST00000586435 SPDYE6P0CI01 402 aa15.05■□□□□ -0
LIG3-209ENST00000586435 EPHA10Q5JZY3 1008 aa15.05■□□□□ -0
LIG3-209ENST00000586435 SPRYD7Q5W111 196 aa15.05■□□□□ -0
LIG3-209ENST00000586435 LDHAL6AQ6ZMR3 332 aa15.05■□□□□ -0
LIG3-209ENST00000586435 ANGEL1Q9UNK9 670 aaKnown RBP15.05■□□□□ -0
LIG3-209ENST00000586435 SALL2Q9Y467 1007 aaPredicted RBP15.05■□□□□ -0
LIG3-209ENST00000586435 OTOFQ9HC10 1997 aa15.05■□□□□ -0
LIG3-209ENST00000586435 FAM205AQ6ZU69 1335 aa15.04■□□□□ -0
LIG3-209ENST00000586435 GPR25O00155 361 aa15.04■□□□□ -0
LIG3-209ENST00000586435 MYO1BO43795 1136 aa15.04■□□□□ -0
LIG3-209ENST00000586435 CFAP100Q494V2 611 aa15.04■□□□□ -0
LIG3-209ENST00000586435 HPS5Q9UPZ3 1129 aa15.04■□□□□ -0
LIG3-209ENST00000586435 PPP1R12BO60237 982 aaPredicted RBP15.03■□□□□ -0
LIG3-209ENST00000586435 ALDH1A1P00352 501 aa15.03■□□□□ -0
LIG3-209ENST00000586435 ZBTB48P10074 688 aaPredicted RBP15.03■□□□□ -0
LIG3-209ENST00000586435 SOX10P56693 466 aa15.03■□□□□ -0
LIG3-209ENST00000586435 INHBEP58166 350 aa15.03■□□□□ -0
LIG3-209ENST00000586435 PRKG1Q13976 671 aa15.03■□□□□ -0
LIG3-209ENST00000586435 TAF7LQ5H9L4 462 aa15.03■□□□□ -0
LIG3-209ENST00000586435 ZNF594Q96JF6 807 aaPredicted RBP15.03■□□□□ -0
LIG3-209ENST00000586435 SRCIN1Q9C0H9 1055 aa15.03■□□□□ -0
LIG3-209ENST00000586435 CNNM1Q9NRU3 951 aa15.03■□□□□ -0
LIG3-209ENST00000586435 C9orf78Q9NZ63 289 aaPredicted RBP15.03■□□□□ -0
LIG3-209ENST00000586435 TNRC18O15417 2968 aaPredicted RBP15.03■□□□□ -0
LIG3-209ENST00000586435 UTYO14607 1347 aa15.02■□□□□ -0
LIG3-209ENST00000586435 MANSC4A6NHS7 340 aaPredicted RBP15.02■□□□□ -0
LIG3-209ENST00000586435 MKRN3Q13064 507 aaKnown RBP15.02■□□□□ -0
LIG3-209ENST00000586435 UBE4AQ14139 1066 aa15.02■□□□□ -0
LIG3-209ENST00000586435 SUPT20HL1Q3ZLR7 823 aa15.02■□□□□ -0
LIG3-209ENST00000586435 TDRD7Q8NHU6 1098 aaKnown RBP15.02■□□□□ -0
LIG3-209ENST00000586435 PRMT6Q96LA8 375 aaPredicted RBP15.02■□□□□ -0
LIG3-209ENST00000586435 PCDHAC2Q9Y5I4 1007 aa15.02■□□□□ -0
LIG3-209ENST00000586435 F8W031 263 aaPredicted RBP15.01□□□□□ -0.01
LIG3-209ENST00000586435 FKTNO75072 461 aa15.01□□□□□ -0.01
LIG3-209ENST00000586435 FBXO46Q6PJ61 603 aaPredicted RBP15.01□□□□□ -0.01
LIG3-209ENST00000586435 ZNF521Q96K83 1311 aa15□□□□□ -0.01
LIG3-209ENST00000586435 CLRN2A0PK11 232 aa15□□□□□ -0.01
LIG3-209ENST00000586435 ZEB1P37275 1124 aaPredicted RBP15□□□□□ -0.01
LIG3-209ENST00000586435 TNFAIP1Q13829 316 aa15□□□□□ -0.01
LIG3-209ENST00000586435 MFSD14BQ5SR56 506 aa15□□□□□ -0.01
LIG3-209ENST00000586435 SLC10A4Q96EP9 437 aa15□□□□□ -0.01
LIG3-209ENST00000586435 KAZALD1Q96I82 304 aa15□□□□□ -0.01
LIG3-209ENST00000586435 WNK4Q96J92 1243 aa15□□□□□ -0.01
LIG3-209ENST00000586435 SERPINA10Q9UK55 444 aa15□□□□□ -0.01
LIG3-209ENST00000586435 FZD1Q9UP38 647 aa15□□□□□ -0.01
LIG3-209ENST00000586435 AOX1Q06278 1338 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 MROH5Q6ZUA9 1318 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 ZNF316A6NFI3 1004 aaPredicted RBP14.99□□□□□ -0.01
LIG3-209ENST00000586435 PLIN1O60240 522 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 HIBADHP31937 336 aaKnown RBP14.99□□□□□ -0.01
LIG3-209ENST00000586435 IREB2P48200 963 aaKnown RBP14.99□□□□□ -0.01
LIG3-209ENST00000586435 RABL6Q3YEC7 729 aaPredicted RBP14.99□□□□□ -0.01
LIG3-209ENST00000586435 SPDYE2Q495Y8 402 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 SLC4A10Q6U841 1118 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 IFNL1Q8IU54 200 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 SUCLG2Q96I99 432 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 CLMNQ96JQ2 1002 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 FAM84BQ96KN1 310 aaPredicted RBP14.99□□□□□ -0.01
LIG3-209ENST00000586435 VEZTQ9HBM0 779 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 JAG2Q9Y219 1238 aa14.99□□□□□ -0.01
LIG3-209ENST00000586435 RBBP6Q7Z6E9 1792 aaKnown RBP14.98□□□□□ -0.01
LIG3-209ENST00000586435 MYH13Q9UKX3 1938 aa14.98□□□□□ -0.01
LIG3-209ENST00000586435 NBPF7P0C2Y1 421 aaPredicted RBP14.98□□□□□ -0.01
LIG3-209ENST00000586435 RBM5P52756 815 aaKnown RBP eCLIP14.98□□□□□ -0.01
LIG3-209ENST00000586435 RASA3Q14644 834 aa14.98□□□□□ -0.01
LIG3-209ENST00000586435 NBPF12Q5TAG4 269 aaPredicted RBP14.98□□□□□ -0.01
LIG3-209ENST00000586435 ANKRD13AQ8IZ07 590 aa14.98□□□□□ -0.01
LIG3-209ENST00000586435 R3HDMLQ9H3Y0 253 aa14.98□□□□□ -0.01
LIG3-209ENST00000586435 TTF2Q9UNY4 1162 aaKnown RBP14.98□□□□□ -0.01
LIG3-209ENST00000586435 RIPOR2Q9Y4F9 1068 aa14.98□□□□□ -0.01
LIG3-209ENST00000586435 IGF2BP3O00425 579 aaKnown RBP eCLIP14.97□□□□□ -0.01
LIG3-209ENST00000586435 USP2O75604 605 aaPredicted RBP14.97□□□□□ -0.01
LIG3-209ENST00000586435 GYG1P46976 350 aa14.97□□□□□ -0.01
LIG3-209ENST00000586435 FAM9BQ8IZU0 186 aa14.97□□□□□ -0.01
LIG3-209ENST00000586435 PUS3Q9BZE2 481 aaKnown RBP14.97□□□□□ -0.01
LIG3-209ENST00000586435 ZNF70Q9UC06 446 aaPredicted RBP14.97□□□□□ -0.01
LIG3-209ENST00000586435 PTPRCP08575 1304 aa14.96□□□□□ -0.01
LIG3-209ENST00000586435 BICC1Q9H694 974 aaKnown RBP14.96□□□□□ -0.01
LIG3-209ENST00000586435 TESPA1A2RU30 521 aaPredicted RBP14.95□□□□□ -0.02
LIG3-209ENST00000586435 GJA5P36382 358 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 CRKP46108 304 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 HDLBPQ00341 1268 aaKnown RBP14.95□□□□□ -0.02
LIG3-209ENST00000586435 OTUD7BQ6GQQ9 843 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 FBXO33Q7Z6M2 555 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 DZIP1LQ8IYY4 767 aaKnown RBP14.95□□□□□ -0.02
LIG3-209ENST00000586435 MRPL50Q8N5N7 158 aaKnown RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms