RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 ANKRD18AQ8IVF6 992 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 PSMD1Q99460 953 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 MEIS3Q99687 375 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 TAOK3Q9H2K8 898 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 BICC1Q9H694 974 aaKnown RBP10.05□□□□□ -0.8
SMAD4-204ENST00000586253 WBP1LQ9NX94 342 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 SEPT9Q9UHD8 586 aaPredicted RBP10.05□□□□□ -0.8
SMAD4-204ENST00000586253 TNNQ9UQP3 1299 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 COL4A1P02462 1669 aa10.05□□□□□ -0.8
SMAD4-204ENST00000586253 ANKRD18BA2A2Z9 1011 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 RLBP1P12271 317 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 LMNB1P20700 586 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 IGHMBP2P38935 993 aaKnown RBP10.04□□□□□ -0.8
SMAD4-204ENST00000586253 FKBP4Q02790 459 aaKnown RBP eCLIP10.04□□□□□ -0.8
SMAD4-204ENST00000586253 PDE3AQ14432 1141 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 CCDC57Q2TAC2 916 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 LMBR1LQ6UX01 489 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 DDX12PQ92771 950 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 CCDC85AQ96PX6 553 aaPredicted RBP10.04□□□□□ -0.8
SMAD4-204ENST00000586253 BSDC1Q9NW68 430 aaPredicted RBP10.04□□□□□ -0.8
SMAD4-204ENST00000586253 GTF3C3Q9Y5Q9 886 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 LTBP1Q14766 1721 aa10.04□□□□□ -0.8
SMAD4-204ENST00000586253 RASSF7Q02833 373 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 TMEM132AQ24JP5 1023 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 OLFM4Q6UX06 510 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 ITPRIPQ8IWB1 547 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 ANKRD44Q8N8A2 993 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 RTFDC1Q9BY42 306 aaPredicted RBP10.03□□□□□ -0.8
SMAD4-204ENST00000586253 VPS33BQ9H267 617 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 CHMP3Q9Y3E7 222 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 DICER1Q9UPY3 1922 aaKnown RBP10.03□□□□□ -0.8
SMAD4-204ENST00000586253 ZC3H4Q9UPT8 1303 aaKnown RBP10.03□□□□□ -0.8
SMAD4-204ENST00000586253 SPEF2Q9C093 1822 aa10.03□□□□□ -0.8
SMAD4-204ENST00000586253 CCDC88AQ3V6T2 1871 aa10.02□□□□□ -0.8
SMAD4-204ENST00000586253 TULP1O00294 542 aaPredicted RBP10.02□□□□□ -0.81
SMAD4-204ENST00000586253 ZBTB7BO15156 539 aaPredicted RBP10.02□□□□□ -0.81
SMAD4-204ENST00000586253 PLIN1O60240 522 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 GNAI2P04899 355 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 MVPQ14764 893 aaKnown RBP10.02□□□□□ -0.81
SMAD4-204ENST00000586253 TSR1Q2NL82 804 aaKnown RBP10.02□□□□□ -0.81
SMAD4-204ENST00000586253 DPP8Q6V1X1 898 aaPredicted RBP10.02□□□□□ -0.81
SMAD4-204ENST00000586253 MPNDQ8N594 471 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 SUPT20HQ8NEM7 779 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 PANK1Q8TE04 598 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 MPHOSPH8Q99549 860 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 CHMP4BQ9H444 224 aaKnown RBP10.02□□□□□ -0.81
SMAD4-204ENST00000586253 PODXL2Q9NZ53 605 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 TSKSQ9UJT2 592 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 DDX19BQ9UMR2 479 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 LRRFIP2Q9Y608 721 aaKnown RBP10.02□□□□□ -0.81
SMAD4-204ENST00000586253 XDHP47989 1333 aa10.02□□□□□ -0.81
SMAD4-204ENST00000586253 DUOX1Q9NRD9 1551 aa10.01□□□□□ -0.81
SMAD4-204ENST00000586253 RRP1P56182 461 aaKnown RBP10.01□□□□□ -0.81
SMAD4-204ENST00000586253 MTX1Q13505 466 aa10.01□□□□□ -0.81
SMAD4-204ENST00000586253 TAF7LQ5H9L4 462 aa10.01□□□□□ -0.81
SMAD4-204ENST00000586253 C9orf131Q5VYM1 1079 aa10.01□□□□□ -0.81
SMAD4-204ENST00000586253 NYAP1Q6ZVC0 841 aa10.01□□□□□ -0.81
SMAD4-204ENST00000586253 RNF181Q9P0P0 153 aa10.01□□□□□ -0.81
SMAD4-204ENST00000586253 MINPP1Q9UNW1 487 aa10.01□□□□□ -0.81
SMAD4-204ENST00000586253 TIAM2Q8IVF5 1701 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 IARSP41252 1262 aaKnown RBP10□□□□□ -0.81
SMAD4-204ENST00000586253 PRELPP51888 382 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 GPSM2P81274 684 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 E2F4Q16254 413 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 LDHAL6AQ6ZMR3 332 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 SLC51AQ86UW1 340 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 ANKRD2Q9GZV1 360 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 ZNF277Q9NRM2 450 aaPredicted RBP10□□□□□ -0.81
SMAD4-204ENST00000586253 ANKIB1Q9P2G1 1089 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 FAM198AQ9UFP1 575 aa10□□□□□ -0.81
SMAD4-204ENST00000586253 NSFL1CQ9UNZ2 370 aaKnown RBP10□□□□□ -0.81
SMAD4-204ENST00000586253 A0A1B0GUL6 1792 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 ATP2B4P23634 1241 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 YY1P25490 414 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 RFX5P48382 616 aaPredicted RBP9.99□□□□□ -0.81
SMAD4-204ENST00000586253 KIAA2012Q0VF49 1180 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 TBC1D16Q8TBP0 767 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 EYA3Q99504 573 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 IRX2Q9BZI1 471 aaPredicted RBP9.99□□□□□ -0.81
SMAD4-204ENST00000586253 CNNM1Q9NRU3 951 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 POLLQ9UGP5 575 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 GGA1Q9UJY5 639 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 LEMD3Q9Y2U8 911 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 COG6Q9Y2V7 657 aa9.99□□□□□ -0.81
SMAD4-204ENST00000586253 C3orf80F5H4A9 247 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 SRGAP3O43295 1099 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 PPIP5K2O43314 1243 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 PTPN12Q05209 780 aaKnown RBP9.98□□□□□ -0.81
SMAD4-204ENST00000586253 CHRNDQ07001 517 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 C20orf194Q5TEA3 1177 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 LARGE2Q8N3Y3 721 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 JDP2Q8WYK2 163 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 ZNF594Q96JF6 807 aaPredicted RBP9.98□□□□□ -0.81
SMAD4-204ENST00000586253 COPRSQ9NQ92 184 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 RIPOR2Q9Y4F9 1068 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 ARIH1Q9Y4X5 557 aaPredicted RBP9.98□□□□□ -0.81
SMAD4-204ENST00000586253 MROH5Q6ZUA9 1318 aa9.98□□□□□ -0.81
SMAD4-204ENST00000586253 C6orf229H3BNL8 230 aa9.97□□□□□ -0.81
SMAD4-204ENST00000586253 FZD9O00144 591 aa9.97□□□□□ -0.81
SMAD4-204ENST00000586253 EYA2O00167 538 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms