RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ATF7IPQ6VMQ6 1270 aa15.45■□□□□ 0.06
SS18-225ENST00000585121 CDCA5Q96FF9 252 aa15.45■□□□□ 0.06
SS18-225ENST00000585121 FAM84BQ96KN1 310 aaPredicted RBP15.45■□□□□ 0.06
SS18-225ENST00000585121 WBP1LQ9NX94 342 aa15.45■□□□□ 0.06
SS18-225ENST00000585121 PSME4Q14997 1843 aa15.45■□□□□ 0.06
SS18-225ENST00000585121 BCAR3O75815 825 aa15.44■□□□□ 0.06
SS18-225ENST00000585121 CTCFP49711 727 aaPredicted RBP15.44■□□□□ 0.06
SS18-225ENST00000585121 PUM3Q15397 648 aaKnown RBP15.44■□□□□ 0.06
SS18-225ENST00000585121 TDRD7Q8NHU6 1098 aaKnown RBP15.44■□□□□ 0.06
SS18-225ENST00000585121 FBXO3Q9UK99 471 aa15.44■□□□□ 0.06
SS18-225ENST00000585121 LRRFIP2Q9Y608 721 aaKnown RBP15.44■□□□□ 0.06
SS18-225ENST00000585121 F8W031 263 aaPredicted RBP15.43■□□□□ 0.06
SS18-225ENST00000585121 MYO1BO43795 1136 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 NF2P35240 595 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 PTPN12Q05209 780 aaKnown RBP15.43■□□□□ 0.06
SS18-225ENST00000585121 APOBEC3FQ8IUX4 373 aaKnown RBP15.43■□□□□ 0.06
SS18-225ENST00000585121 CERS5Q8N5B7 392 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 MEIS3Q99687 375 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 JAG2Q9Y219 1238 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 FAM205AQ6ZU69 1335 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 FOXN1O15353 648 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 SLC5A1P13866 664 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 TRIM27P14373 513 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 RFX5P48382 616 aaPredicted RBP15.43■□□□□ 0.06
SS18-225ENST00000585121 RBM5P52756 815 aaKnown RBP eCLIP15.43■□□□□ 0.06
SS18-225ENST00000585121 FKBP1BP68106 108 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 MFSD14BQ5SR56 506 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 ZKSCAN2Q63HK3 967 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 FBXO33Q7Z6M2 555 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 VGLL2Q8N8G2 317 aa15.43■□□□□ 0.06
SS18-225ENST00000585121 ZBED9Q6R2W3 1325 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 AOC2O75106 756 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 NOGQ13253 232 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 COL13A1Q5TAT6 717 aaPredicted RBP15.42■□□□□ 0.06
SS18-225ENST00000585121 IFFO2Q5TF58 517 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 RGMBQ6NW40 437 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 MTMR14Q8NCE2 650 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 LPIN2Q92539 896 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 CCDC102AQ96A19 550 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 SIL1Q9H173 461 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 CEP126Q9P2H0 1117 aa15.42■□□□□ 0.06
SS18-225ENST00000585121 CIAO1O76071 339 aa15.41■□□□□ 0.06
SS18-225ENST00000585121 IL15P40933 162 aaPredicted RBP15.41■□□□□ 0.06
SS18-225ENST00000585121 ZNF157P51786 506 aaPredicted RBP15.41■□□□□ 0.06
SS18-225ENST00000585121 CHAF1AQ13111 956 aaPredicted RBP15.41■□□□□ 0.06
SS18-225ENST00000585121 CFAP100Q494V2 611 aa15.41■□□□□ 0.06
SS18-225ENST00000585121 TBC1D22AQ8WUA7 517 aa15.41■□□□□ 0.06
SS18-225ENST00000585121 CLUAP1Q96AJ1 413 aa15.41■□□□□ 0.06
SS18-225ENST00000585121 ZBED3Q96IU2 234 aaPredicted RBP15.41■□□□□ 0.06
SS18-225ENST00000585121 TTLL12Q14166 644 aaPredicted RBP15.4■□□□□ 0.06
SS18-225ENST00000585121 TTF2Q9UNY4 1162 aaKnown RBP15.4■□□□□ 0.06
SS18-225ENST00000585121 SCAF8Q9UPN6 1271 aaKnown RBP15.4■□□□□ 0.06
SS18-225ENST00000585121 IQSEC3Q9UPP2 1182 aaPredicted RBP15.4■□□□□ 0.06
SS18-225ENST00000585121 POLR2AP24928 1970 aaKnown RBP15.4■□□□□ 0.06
SS18-225ENST00000585121 GNAI2P04899 355 aa15.39■□□□□ 0.05
SS18-225ENST00000585121 FGFR2P21802 821 aa15.39■□□□□ 0.05
SS18-225ENST00000585121 BCAMP50895 628 aa15.39■□□□□ 0.05
SS18-225ENST00000585121 ATG9AQ7Z3C6 839 aa15.39■□□□□ 0.05
SS18-225ENST00000585121 FTSJ3Q8IY81 847 aaKnown RBP15.39■□□□□ 0.05
SS18-225ENST00000585121 PRDM10Q9NQV6 1147 aa15.39■□□□□ 0.05
SS18-225ENST00000585121 SPDYE2BA6NHP3 402 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 SRGAP3O43295 1099 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 CA12O43570 354 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 SPDYE6P0CI01 402 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 PRAMEF18Q5VWM3 479 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 TNS4Q8IZW8 715 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 COPRSQ9NQ92 184 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 GNL3LQ9NVN8 582 aaKnown RBP15.38■□□□□ 0.05
SS18-225ENST00000585121 SERPINA10Q9UK55 444 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 ATP2B3Q16720 1220 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 ARMC9Q7Z3E5 817 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 VEZTQ9HBM0 779 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 PA2G4Q9UQ80 394 aaKnown RBP15.38■□□□□ 0.05
SS18-225ENST00000585121 PPP2R3BQ9Y5P8 575 aa15.38■□□□□ 0.05
SS18-225ENST00000585121 A0A1B0GUL6 1792 aa15.37■□□□□ 0.05
SS18-225ENST00000585121 CLRN2A0PK11 232 aa15.37■□□□□ 0.05
SS18-225ENST00000585121 LBX1P52954 281 aa15.37■□□□□ 0.05
SS18-225ENST00000585121 PRMT6Q96LA8 375 aaPredicted RBP15.37■□□□□ 0.05
SS18-225ENST00000585121 DEFB129Q9H1M3 183 aa15.37■□□□□ 0.05
SS18-225ENST00000585121 TNNQ9UQP3 1299 aa15.37■□□□□ 0.05
SS18-225ENST00000585121 HSPA8P11142 646 aaKnown RBP15.36■□□□□ 0.05
SS18-225ENST00000585121 MTX1Q13505 466 aa15.36■□□□□ 0.05
SS18-225ENST00000585121 TNFAIP1Q13829 316 aa15.36■□□□□ 0.05
SS18-225ENST00000585121 DZIP1LQ8IYY4 767 aaKnown RBP15.36■□□□□ 0.05
SS18-225ENST00000585121 TMEM57Q8N5G2 664 aa15.36■□□□□ 0.05
SS18-225ENST00000585121 WDR66Q8TBY9 1149 aa15.36■□□□□ 0.05
SS18-225ENST00000585121 SUGT1Q9Y2Z0 365 aa15.36■□□□□ 0.05
SS18-225ENST00000585121 UBE2Q2LH0YL09 131 aa15.35■□□□□ 0.05
SS18-225ENST00000585121 MAST3O60307 1309 aa15.35■□□□□ 0.05
SS18-225ENST00000585121 COL1A1P02452 1464 aaPredicted RBP15.35■□□□□ 0.05
SS18-225ENST00000585121 SLC10A3P09131 477 aa15.35■□□□□ 0.05
SS18-225ENST00000585121 CRKP46108 304 aa15.35■□□□□ 0.05
SS18-225ENST00000585121 HDLBPQ00341 1268 aaKnown RBP15.35■□□□□ 0.05
SS18-225ENST00000585121 SUPT20HL1Q3ZLR7 823 aa15.35■□□□□ 0.05
SS18-225ENST00000585121 AKAP2Q9Y2D5 859 aa15.35■□□□□ 0.05
SS18-225ENST00000585121 PCDHAC2Q9Y5I4 1007 aa15.35■□□□□ 0.05
SS18-225ENST00000585121 ZNF646O15015 1829 aaPredicted RBP15.34■□□□□ 0.05
SS18-225ENST00000585121 FAM155AB1AL88 458 aaPredicted RBP15.34■□□□□ 0.05
SS18-225ENST00000585121 PPP1R12BO60237 982 aaPredicted RBP15.34■□□□□ 0.05
SS18-225ENST00000585121 KIF23Q02241 960 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms