RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 GRM1Q13255 1194 aa18.25■□□□□ 0.51
SMARCE1-216ENST00000580419 DLK2Q6UY11 383 aa18.25■□□□□ 0.51
SMARCE1-216ENST00000580419 TDRD7Q8NHU6 1098 aaKnown RBP18.25■□□□□ 0.51
SMARCE1-216ENST00000580419 USP44Q9H0E7 712 aa18.25■□□□□ 0.51
SMARCE1-216ENST00000580419 ARAP2Q8WZ64 1704 aa18.24■□□□□ 0.51
SMARCE1-216ENST00000580419 ZBTB22O15209 634 aa18.24■□□□□ 0.51
SMARCE1-216ENST00000580419 KIAA0825Q8IV33 1275 aa18.24■□□□□ 0.51
SMARCE1-216ENST00000580419 HELBQ8NG08 1087 aaPredicted RBP18.24■□□□□ 0.51
SMARCE1-216ENST00000580419 BICC1Q9H694 974 aaKnown RBP18.24■□□□□ 0.51
SMARCE1-216ENST00000580419 FBXO3Q9UK99 471 aa18.24■□□□□ 0.51
SMARCE1-216ENST00000580419 HDAC5Q9UQL6 1122 aa18.24■□□□□ 0.51
SMARCE1-216ENST00000580419 LAMB1P07942 1786 aa18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 KIF23Q02241 960 aaPredicted RBP18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 DLGAP5Q15398 846 aa18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 RASAL3Q86YV0 1011 aa18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 CERS5Q8N5B7 392 aa18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 ANKRD44Q8N8A2 993 aa18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 ZNF594Q96JF6 807 aaPredicted RBP18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 MXD3Q9BW11 206 aa18.23■□□□□ 0.51
SMARCE1-216ENST00000580419 MYO1BO43795 1136 aa18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 HIBADHP31937 336 aaKnown RBP18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 MAP3K11Q16584 847 aa18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 NOM1Q5C9Z4 860 aaKnown RBP18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 VGLL2Q8N8G2 317 aa18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 FAM84BQ96KN1 310 aaPredicted RBP18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 CSRNP1Q96S65 589 aa18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 MRIQ9BWK5 157 aa18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 SERPINA10Q9UK55 444 aa18.22■□□□□ 0.51
SMARCE1-216ENST00000580419 SPDYE2BA6NHP3 402 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 SNAP23O00161 211 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 PDE8BO95263 885 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 SPDYE6P0CI01 402 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 HDLBPQ00341 1268 aaKnown RBP18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 LDLRAD1Q5T700 205 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 FBXO33Q7Z6M2 555 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 ARHGAP45Q92619 1136 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 FBXW7Q969H0 707 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 ZIC5Q96T25 663 aa18.21■□□□□ 0.51
SMARCE1-216ENST00000580419 ARMC9Q7Z3E5 817 aa18.2■□□□□ 0.5
SMARCE1-216ENST00000580419 TBC1D22AQ8WUA7 517 aa18.2■□□□□ 0.5
SMARCE1-216ENST00000580419 ABHD8Q96I13 439 aa18.2■□□□□ 0.5
SMARCE1-216ENST00000580419 CFHR5Q9BXR6 569 aa18.2■□□□□ 0.5
SMARCE1-216ENST00000580419 DEFB129Q9H1M3 183 aa18.2■□□□□ 0.5
SMARCE1-216ENST00000580419 SUGT1Q9Y2Z0 365 aa18.2■□□□□ 0.5
SMARCE1-216ENST00000580419 TM4SF4P48230 202 aa18.19■□□□□ 0.5
SMARCE1-216ENST00000580419 PUS3Q9BZE2 481 aaKnown RBP18.19■□□□□ 0.5
SMARCE1-216ENST00000580419 SMC4Q9NTJ3 1288 aa18.19■□□□□ 0.5
SMARCE1-216ENST00000580419 TNFAIP1Q13829 316 aa18.18■□□□□ 0.5
SMARCE1-216ENST00000580419 SUPT20HL1Q3ZLR7 823 aa18.18■□□□□ 0.5
SMARCE1-216ENST00000580419 CAVIN4Q5BKX8 364 aa18.18■□□□□ 0.5
SMARCE1-216ENST00000580419 CDCA7LQ96GN5 454 aa18.18■□□□□ 0.5
SMARCE1-216ENST00000580419 API5Q9BZZ5 524 aaKnown RBP18.18■□□□□ 0.5
SMARCE1-216ENST00000580419 RNF186Q9NXI6 227 aa18.18■□□□□ 0.5
SMARCE1-216ENST00000580419 FGFR2P21802 821 aa18.17■□□□□ 0.5
SMARCE1-216ENST00000580419 INHBEP58166 350 aa18.17■□□□□ 0.5
SMARCE1-216ENST00000580419 CFAP100Q494V2 611 aa18.17■□□□□ 0.5
SMARCE1-216ENST00000580419 MFSD14BQ5SR56 506 aa18.17■□□□□ 0.5
SMARCE1-216ENST00000580419 PPP1R12BO60237 982 aaPredicted RBP18.16■□□□□ 0.5
SMARCE1-216ENST00000580419 PLIN1O60240 522 aa18.16■□□□□ 0.5
SMARCE1-216ENST00000580419 CIAO1O76071 339 aa18.16■□□□□ 0.5
SMARCE1-216ENST00000580419 PUM3Q15397 648 aaKnown RBP18.16■□□□□ 0.5
SMARCE1-216ENST00000580419 METTL24Q5JXM2 366 aa18.16■□□□□ 0.5
SMARCE1-216ENST00000580419 PRMT6Q96LA8 375 aaPredicted RBP18.16■□□□□ 0.5
SMARCE1-216ENST00000580419 UBE2Q2LH0YL09 131 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 EYA2O00167 538 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 CAPN15O75808 1086 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 ZBTB48P10074 688 aaPredicted RBP18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 GYG1P46976 350 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 RFX5P48382 616 aaPredicted RBP18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 RGS19P49795 217 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 SREBF2Q12772 1141 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 SPDYE2Q495Y8 402 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 LRRC24Q50LG9 513 aa18.15■□□□□ 0.5
SMARCE1-216ENST00000580419 IFIT1P09914 478 aaKnown RBP18.14■□□□□ 0.49
SMARCE1-216ENST00000580419 PTPN12Q05209 780 aaKnown RBP18.14■□□□□ 0.49
SMARCE1-216ENST00000580419 FKBP1CQ5VVH2 108 aa18.14■□□□□ 0.49
SMARCE1-216ENST00000580419 VPS37DQ86XT2 251 aa18.14■□□□□ 0.49
SMARCE1-216ENST00000580419 TSKSQ9UJT2 592 aa18.14■□□□□ 0.49
SMARCE1-216ENST00000580419 TTF2Q9UNY4 1162 aaKnown RBP18.14■□□□□ 0.49
SMARCE1-216ENST00000580419 MAST3O60307 1309 aa18.14■□□□□ 0.49
SMARCE1-216ENST00000580419 TRPA1O75762 1119 aa18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 ALDH1A1P00352 501 aa18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 UBTFL1P0CB47 393 aaPredicted RBP18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 RARSP54136 660 aaKnown RBP18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 TTLL12Q14166 644 aaPredicted RBP18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 PRAMEF18Q5VWM3 479 aa18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 LPIN2Q92539 896 aa18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 MYH13Q9UKX3 1938 aa18.13■□□□□ 0.49
SMARCE1-216ENST00000580419 SPRYD7Q5W111 196 aa18.12■□□□□ 0.49
SMARCE1-216ENST00000580419 INTS3Q68E01 1043 aaKnown RBP18.12■□□□□ 0.49
SMARCE1-216ENST00000580419 MOB2Q70IA6 237 aa18.12■□□□□ 0.49
SMARCE1-216ENST00000580419 DZIP1LQ8IYY4 767 aaKnown RBP18.12■□□□□ 0.49
SMARCE1-216ENST00000580419 MCOLN1Q9GZU1 580 aa18.12■□□□□ 0.49
SMARCE1-216ENST00000580419 NOB1Q9ULX3 412 aaKnown RBP18.12■□□□□ 0.49
SMARCE1-216ENST00000580419 SSC5DA1L4H1 1573 aa18.12■□□□□ 0.49
SMARCE1-216ENST00000580419 MANSC4A6NHS7 340 aaPredicted RBP18.11■□□□□ 0.49
SMARCE1-216ENST00000580419 PKN2Q16513 984 aaKnown RBP18.11■□□□□ 0.49
SMARCE1-216ENST00000580419 ATG9AQ7Z3C6 839 aa18.11■□□□□ 0.49
SMARCE1-216ENST00000580419 ZDHHC15Q96MV8 337 aa18.11■□□□□ 0.49
SMARCE1-216ENST00000580419 ANGEL1Q9UNK9 670 aaKnown RBP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms