RNA–Protein interactions for RNA: ENST00000578830.5

NUP85-208, Transcript of nucleoporin 85, human

TSL 5

Gene NUP85, Length 922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-208	ENST00000578830	RIC3	Q7Z5B4	369 aa		11.33	□□□□□ -0.6
NUP85-208	ENST00000578830	CCDC146	Q8IYE0	955 aa		11.33	□□□□□ -0.6
NUP85-208	ENST00000578830	RUNDC1	Q96C34	613 aa		11.33	□□□□□ -0.6
NUP85-208	ENST00000578830	ADAMTS8	Q9UP79	889 aa		11.33	□□□□□ -0.6
NUP85-208	ENST00000578830	HPS5	Q9UPZ3	1129 aa		11.33	□□□□□ -0.6
NUP85-208	ENST00000578830		A0A1B0GUL6	1792 aa		11.33	□□□□□ -0.6
NUP85-208	ENST00000578830	XDH	P47989	1333 aa		11.33	□□□□□ -0.6
NUP85-208	ENST00000578830	USP17L3	A6NCW0	530 aa		11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	USP17L4	A6NCW7	530 aa		11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	PDE8A	O60658	829 aa		11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	NOM1	Q5C9Z4	860 aa	Known RBP	11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	USP17L1	Q7RTZ2	530 aa		11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	PODN	Q7Z5L7	613 aa		11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	CCDC191	Q8NCU4	936 aa		11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	HDAC9	Q9UKV0	1011 aa		11.32	□□□□□ -0.6
NUP85-208	ENST00000578830	PCCA	P05165	728 aa	Predicted RBP	11.31	□□□□□ -0.6
NUP85-208	ENST00000578830	ATP2B4	P23634	1241 aa		11.31	□□□□□ -0.6
NUP85-208	ENST00000578830	TM4SF4	P48230	202 aa		11.31	□□□□□ -0.6
NUP85-208	ENST00000578830	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
NUP85-208	ENST00000578830	MOB2	Q70IA6	237 aa		11.31	□□□□□ -0.6
NUP85-208	ENST00000578830	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.31	□□□□□ -0.6
NUP85-208	ENST00000578830	MYD88	Q99836	296 aa		11.31	□□□□□ -0.6
NUP85-208	ENST00000578830	MED23	Q9ULK4	1368 aa		11.3	□□□□□ -0.6
NUP85-208	ENST00000578830	CEP290	O15078	2479 aa		11.3	□□□□□ -0.6
NUP85-208	ENST00000578830	UBE2Q2L	H0YL09	131 aa		11.3	□□□□□ -0.6
NUP85-208	ENST00000578830	TBC1D8	O95759	1140 aa		11.3	□□□□□ -0.6
NUP85-208	ENST00000578830	ANKRD18A	Q8IVF6	992 aa		11.3	□□□□□ -0.6
NUP85-208	ENST00000578830	MBIP	Q9NS73	344 aa		11.3	□□□□□ -0.6
NUP85-208	ENST00000578830	CWC25	Q9NXE8	425 aa	Predicted RBP	11.3	□□□□□ -0.6
NUP85-208	ENST00000578830	GPR25	O00155	361 aa		11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	NF2	P35240	595 aa		11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	MMP14	P50281	582 aa		11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	NBPF9	Q3BBW0	867 aa		11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	CDC5L	Q99459	802 aa	Known RBP	11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	CFHR5	Q9BXR6	569 aa		11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	PHAX	Q9H814	394 aa	Known RBP	11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	SCAF8	Q9UPN6	1271 aa	Known RBP	11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	MYO3B	Q8WXR4	1341 aa		11.29	□□□□□ -0.6
NUP85-208	ENST00000578830	ZNF853	P0CG23	659 aa		11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	SREBF2	Q12772	1141 aa		11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	TTLL12	Q14166	644 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	DACT2	Q5SW24	774 aa		11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	PRAMEF18	Q5VWM3	479 aa		11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	OGFOD1	Q8N543	542 aa		11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	METTL22	Q9BUU2	404 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	OTOF	Q9HC10	1997 aa		11.28	□□□□□ -0.6
NUP85-208	ENST00000578830	WNT10B	O00744	389 aa		11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	DDX58	O95786	925 aa	Known RBP	11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	CTSW	P56202	376 aa		11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	STRIP1	Q5VSL9	837 aa		11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	FBXO22	Q8NEZ5	403 aa		11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	JARID2	Q92833	1246 aa	Predicted RBP	11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	MFRP	Q9BY79	579 aa		11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	BSDC1	Q9NW68	430 aa	Predicted RBP	11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	IFT57	Q9NWB7	429 aa		11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	MINPP1	Q9UNW1	487 aa		11.27	□□□□□ -0.61
NUP85-208	ENST00000578830	COL1A1	P02452	1464 aa	Predicted RBP	11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	WTIP	A6NIX2	430 aa	Predicted RBP	11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	ST18	O60284	1047 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	FKTN	O75072	461 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	CCT4	P50991	539 aa	Known RBP	11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	GNAI1	P63096	354 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	ARMC9	Q7Z3E5	817 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	TTLL11	Q8NHH1	800 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	MXD3	Q9BW11	206 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	CHMP4A	Q9BY43	222 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	COA1	Q9GZY4	146 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	ZBED9	Q6R2W3	1325 aa		11.26	□□□□□ -0.61
NUP85-208	ENST00000578830	ELL2	O00472	640 aa	Predicted RBP	11.25	□□□□□ -0.61
NUP85-208	ENST00000578830	PTPN12	Q05209	780 aa	Known RBP	11.25	□□□□□ -0.61
NUP85-208	ENST00000578830	CALD1	Q05682	793 aa	Known RBP	11.25	□□□□□ -0.61
NUP85-208	ENST00000578830	LDLRAD1	Q5T700	205 aa		11.25	□□□□□ -0.61
NUP85-208	ENST00000578830	FBXW7	Q969H0	707 aa		11.25	□□□□□ -0.61
NUP85-208	ENST00000578830	GCC1	Q96CN9	775 aa		11.25	□□□□□ -0.61
NUP85-208	ENST00000578830	APAF1	O14727	1248 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	SASH1	O94885	1247 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	ALDH1A1	P00352	501 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	CCDC30	Q5VVM6	783 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	SPRYD7	Q5W111	196 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	GREM2	Q9H772	168 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	MAP3K2	Q9Y2U5	619 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	LEMD3	Q9Y2U8	911 aa		11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	SALL2	Q9Y467	1007 aa	Predicted RBP	11.24	□□□□□ -0.61
NUP85-208	ENST00000578830	ARAP2	Q8WZ64	1704 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	IGKV5-2	P06315	115 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	INHBE	P58166	350 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	TTLL5	Q6EMB2	1281 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	KSR2	Q6VAB6	950 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	TXNRD3	Q86VQ6	643 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	C8orf58	Q8NAV2	365 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	ZBED3	Q96IU2	234 aa	Predicted RBP	11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	R3HDML	Q9H3Y0	253 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	ANGEL1	Q9UNK9	670 aa	Known RBP	11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	SZT2	Q5T011	3432 aa		11.23	□□□□□ -0.61
NUP85-208	ENST00000578830	ZNF804B	A4D1E1	1349 aa		11.22	□□□□□ -0.61
NUP85-208	ENST00000578830	PI4KAP2	A4QPH2	592 aa		11.22	□□□□□ -0.61

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