RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 IGF2BP3O00425 579 aaKnown RBP eCLIP24.53■■□□□ 1.52
NUP88-203ENST00000572019 CHMP4AQ9BY43 222 aa24.53■■□□□ 1.52
NUP88-203ENST00000572019 COL1A1P02452 1464 aaPredicted RBP24.52■■□□□ 1.52
NUP88-203ENST00000572019 MKI67P46013 3256 aaKnown RBP24.52■■□□□ 1.52
NUP88-203ENST00000572019 GJA5P36382 358 aa24.52■■□□□ 1.52
NUP88-203ENST00000572019 CAP1Q01518 475 aa24.52■■□□□ 1.52
NUP88-203ENST00000572019 FKBP5Q13451 457 aaPredicted RBP24.52■■□□□ 1.52
NUP88-203ENST00000572019 DLGAP5Q15398 846 aa24.52■■□□□ 1.52
NUP88-203ENST00000572019 IFNL1Q8IU54 200 aa24.52■■□□□ 1.52
NUP88-203ENST00000572019 PRMT6Q96LA8 375 aaPredicted RBP24.52■■□□□ 1.52
NUP88-203ENST00000572019 PCDH10Q9P2E7 1040 aa24.52■■□□□ 1.52
NUP88-203ENST00000572019 CENPFP49454 3210 aa24.52■■□□□ 1.52
NUP88-203ENST00000572019 F6X3S4 739 aa24.51■■□□□ 1.51
NUP88-203ENST00000572019 MAP3K11Q16584 847 aa24.51■■□□□ 1.51
NUP88-203ENST00000572019 CCDC27Q2M243 656 aa24.51■■□□□ 1.51
NUP88-203ENST00000572019 CFAP100Q494V2 611 aa24.51■■□□□ 1.51
NUP88-203ENST00000572019 EPHA10Q5JZY3 1008 aa24.51■■□□□ 1.51
NUP88-203ENST00000572019 LINS1Q8NG48 757 aa24.51■■□□□ 1.51
NUP88-203ENST00000572019 WNK4Q96J92 1243 aa24.51■■□□□ 1.51
NUP88-203ENST00000572019 KIAA0100Q14667 2235 aaKnown RBP24.5■■□□□ 1.51
NUP88-203ENST00000572019 ANKRD18BA2A2Z9 1011 aa24.5■■□□□ 1.51
NUP88-203ENST00000572019 MMP14P50281 582 aa24.5■■□□□ 1.51
NUP88-203ENST00000572019 NBPF12Q5TAG4 269 aaPredicted RBP24.5■■□□□ 1.51
NUP88-203ENST00000572019 MTMR14Q8NCE2 650 aa24.5■■□□□ 1.51
NUP88-203ENST00000572019 SLC10A4Q96EP9 437 aa24.5■■□□□ 1.51
NUP88-203ENST00000572019 ZNF594Q96JF6 807 aaPredicted RBP24.5■■□□□ 1.51
NUP88-203ENST00000572019 FANCIQ9NVI1 1328 aa24.5■■□□□ 1.51
NUP88-203ENST00000572019 C15orf52Q6ZUT6 534 aaKnown RBP24.49■■□□□ 1.51
NUP88-203ENST00000572019 MYH16Q9H6N6 1097 aa24.49■■□□□ 1.51
NUP88-203ENST00000572019 POTEFA5A3E0 1075 aa24.48■■□□□ 1.51
NUP88-203ENST00000572019 SPDYE2BA6NHP3 402 aa24.48■■□□□ 1.51
NUP88-203ENST00000572019 SPDYE6P0CI01 402 aa24.48■■□□□ 1.51
NUP88-203ENST00000572019 IL1R1P14778 569 aa24.48■■□□□ 1.51
NUP88-203ENST00000572019 OTOP1Q7RTM1 612 aa24.48■■□□□ 1.51
NUP88-203ENST00000572019 TRIM17Q9Y577 477 aa24.48■■□□□ 1.51
NUP88-203ENST00000572019 MANSC4A6NHS7 340 aaPredicted RBP24.47■■□□□ 1.51
NUP88-203ENST00000572019 VAMP4O75379 141 aa24.47■■□□□ 1.51
NUP88-203ENST00000572019 CDAN1Q8IWY9 1227 aa24.47■■□□□ 1.51
NUP88-203ENST00000572019 VEZTQ9HBM0 779 aa24.47■■□□□ 1.51
NUP88-203ENST00000572019 CHMP3Q9Y3E7 222 aa24.47■■□□□ 1.51
NUP88-203ENST00000572019 RBBP6Q7Z6E9 1792 aaKnown RBP24.47■■□□□ 1.51
NUP88-203ENST00000572019 ARAP2Q8WZ64 1704 aa24.47■■□□□ 1.51
NUP88-203ENST00000572019 BRCA2P51587 3418 aa24.46■■□□□ 1.51
NUP88-203ENST00000572019 IL16Q14005 1332 aa24.45■■□□□ 1.5
NUP88-203ENST00000572019 USP2O75604 605 aaPredicted RBP24.45■■□□□ 1.5
NUP88-203ENST00000572019 IFIT5Q13325 482 aaKnown RBP24.45■■□□□ 1.5
NUP88-203ENST00000572019 BEND3Q5T5X7 828 aa24.45■■□□□ 1.5
NUP88-203ENST00000572019 PTPN18Q99952 460 aa24.45■■□□□ 1.5
NUP88-203ENST00000572019 PLIN1O60240 522 aa24.44■■□□□ 1.5
NUP88-203ENST00000572019 ALDH1A1P00352 501 aa24.44■■□□□ 1.5
NUP88-203ENST00000572019 ZBTB48P10074 688 aaPredicted RBP24.44■■□□□ 1.5
NUP88-203ENST00000572019 CRHR2Q13324 411 aa24.44■■□□□ 1.5
NUP88-203ENST00000572019 LMBR1LQ6UX01 489 aa24.44■■□□□ 1.5
NUP88-203ENST00000572019 SALL2Q9Y467 1007 aaPredicted RBP24.44■■□□□ 1.5
NUP88-203ENST00000572019 ZSWIM8A7E2V4 1837 aa24.43■■□□□ 1.5
NUP88-203ENST00000572019 EXOSC9Q06265 439 aaKnown RBP24.43■■□□□ 1.5
NUP88-203ENST00000572019 RASA3Q14644 834 aa24.43■■□□□ 1.5
NUP88-203ENST00000572019 ZNF804AQ7Z570 1209 aa24.43■■□□□ 1.5
NUP88-203ENST00000572019 CD99L2Q8TCZ2 262 aa24.43■■□□□ 1.5
NUP88-203ENST00000572019 SPINK5Q9NQ38 1064 aaPredicted RBP24.43■■□□□ 1.5
NUP88-203ENST00000572019 PPP2R3BQ9Y5P8 575 aa24.43■■□□□ 1.5
NUP88-203ENST00000572019 PPP1R12BO60237 982 aaPredicted RBP24.42■■□□□ 1.5
NUP88-203ENST00000572019 CNKSR2Q8WXI2 1034 aa24.42■■□□□ 1.5
NUP88-203ENST00000572019 RBM5P52756 815 aaKnown RBP eCLIP24.41■■□□□ 1.5
NUP88-203ENST00000572019 INHBEP58166 350 aa24.41■■□□□ 1.5
NUP88-203ENST00000572019 FKBP1AP62942 108 aaKnown RBP24.41■■□□□ 1.5
NUP88-203ENST00000572019 GRIK5Q16478 980 aa24.41■■□□□ 1.5
NUP88-203ENST00000572019 SUPT20HL1Q3ZLR7 823 aa24.4■■□□□ 1.5
NUP88-203ENST00000572019 PUS3Q9BZE2 481 aaKnown RBP24.4■■□□□ 1.5
NUP88-203ENST00000572019 ELP3Q9H9T3 547 aa24.4■■□□□ 1.5
NUP88-203ENST00000572019 MYO1BO43795 1136 aa24.39■■□□□ 1.49
NUP88-203ENST00000572019 GYG1P46976 350 aa24.39■■□□□ 1.49
NUP88-203ENST00000572019 LDHAL6AQ6ZMR3 332 aa24.39■■□□□ 1.49
NUP88-203ENST00000572019 TEPSINQ96N21 525 aa24.39■■□□□ 1.49
NUP88-203ENST00000572019 TDRD3Q9H7E2 651 aaKnown RBP24.39■■□□□ 1.49
NUP88-203ENST00000572019 ZNF70Q9UC06 446 aaPredicted RBP24.39■■□□□ 1.49
NUP88-203ENST00000572019 PTPN22Q9Y2R2 807 aa24.39■■□□□ 1.49
NUP88-203ENST00000572019 FAM205AQ6ZU69 1335 aa24.38■■□□□ 1.49
NUP88-203ENST00000572019 SPDYE2Q495Y8 402 aa24.38■■□□□ 1.49
NUP88-203ENST00000572019 TDRD7Q8NHU6 1098 aaKnown RBP24.38■■□□□ 1.49
NUP88-203ENST00000572019 KAZALD1Q96I82 304 aa24.38■■□□□ 1.49
NUP88-203ENST00000572019 TESPA1A2RU30 521 aaPredicted RBP24.37■■□□□ 1.49
NUP88-203ENST00000572019 GRM8O00222 908 aa24.37■■□□□ 1.49
NUP88-203ENST00000572019 IREB2P48200 963 aaKnown RBP24.37■■□□□ 1.49
NUP88-203ENST00000572019 MFSD14BQ5SR56 506 aa24.37■■□□□ 1.49
NUP88-203ENST00000572019 ANKRD13AQ8IZ07 590 aa24.37■■□□□ 1.49
NUP88-203ENST00000572019 OPTNQ96CV9 577 aa24.37■■□□□ 1.49
NUP88-203ENST00000572019 MS4A4AQ96JQ5 239 aa24.37■■□□□ 1.49
NUP88-203ENST00000572019 CNNM1Q9NRU3 951 aa24.37■■□□□ 1.49
NUP88-203ENST00000572019 TTF2Q9UNY4 1162 aaKnown RBP24.37■■□□□ 1.49
NUP88-203ENST00000572019 CCDC57Q2TAC2 916 aa24.36■■□□□ 1.49
NUP88-203ENST00000572019 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.36■■□□□ 1.49
NUP88-203ENST00000572019 FAM84BQ96KN1 310 aaPredicted RBP24.36■■□□□ 1.49
NUP88-203ENST00000572019 EN2P19622 333 aaPredicted RBP24.35■■□□□ 1.49
NUP88-203ENST00000572019 TAF7LQ5H9L4 462 aa24.35■■□□□ 1.49
NUP88-203ENST00000572019 ERO1AQ96HE7 468 aa24.35■■□□□ 1.49
NUP88-203ENST00000572019 TMEM39BQ9GZU3 492 aa24.35■■□□□ 1.49
NUP88-203ENST00000572019 UNCXA6NJT0 531 aa24.34■■□□□ 1.49
NUP88-203ENST00000572019 TCP10L2B9ZVM9 353 aa24.34■■□□□ 1.49
NUP88-203ENST00000572019 BRI3BPQ8WY22 251 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms