RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-208	ENST00000570874	UBR2	Q8IWV8	1755 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	SPDYE16	A6NNV3	312 aa	Predicted RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	LZTS3	O60299	673 aa	Predicted RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	HIP1R	O75146	1068 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	CAND2	O75155	1236 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	PPP1R37	O75864	691 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	CT47B1	P0C2W7	299 aa	Predicted RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	XRCC5	P13010	732 aa	Known RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	CLCN1	P35523	988 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	GNAL	P38405	381 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	TERF1	P54274	439 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	MRPL58	Q14197	206 aa	Known RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	COL19A1	Q14993	1142 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	ZKSCAN8	Q15776	578 aa	Predicted RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	CCDC92	Q53HC0	331 aa	Predicted RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	PPP1R18	Q6NYC8	613 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	WDR63	Q8IWG1	891 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	CABLES1	Q8TDN4	633 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	LRRC59	Q96AG4	307 aa	Known RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	APBA2	Q99767	749 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	C19orf44	Q9H6X5	657 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	LZTS1	Q9Y250	596 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	RBM19	Q9Y4C8	960 aa	Known RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	TNS3	Q68CZ2	1445 aa		4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	COL22A1	Q8NFW1	1626 aa	Predicted RBP	4.28	□□□□□ -1.72
SMG6-208	ENST00000570874	KDR	P35968	1356 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	ARFGEF2	Q9Y6D5	1785 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	USP19	O94966	1318 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	DOT1L	Q8TEK3	1739 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	FAM163B	P0C2L3	166 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	RLBP1	P12271	317 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	ATF3	P18847	181 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	ATIC	P31939	592 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	CASP2	P42575	452 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	SERPINB4	P48594	390 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	RARS	P54136	660 aa	Known RBP	4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	MTHFSD	Q2M296	383 aa	Known RBP	4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	KRT24	Q2M2I5	525 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	TMEM164	Q5U3C3	297 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	THSD4	Q6ZMP0	1018 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	MCM10	Q7L590	875 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	KRT77	Q7Z794	578 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	METTL16	Q86W50	562 aa	Known RBP	4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	TSPYL6	Q8N831	410 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	ZNF513	Q8N8E2	541 aa	Predicted RBP	4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	CCDC89	Q8N998	374 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	VPS37A	Q8NEZ2	397 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	PANK1	Q8TE04	598 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	TTC14	Q96N46	770 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	RETREG1	Q9H6L5	497 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	MBIP	Q9NS73	344 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	TFIP11	Q9UBB9	837 aa	Known RBP	4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	ISY1	Q9ULR0	285 aa	Known RBP	4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	CHMP3	Q9Y3E7	222 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	PAPPA	Q13219	1627 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	CRB1	P82279	1406 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	NCOA3	Q9Y6Q9	1424 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	GLI3	P10071	1580 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	RTL1	A6NKG5	1358 aa		4.27	□□□□□ -1.73
SMG6-208	ENST00000570874	CCDC163	A0A0D9SF12	145 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	ELL2	O00472	640 aa	Predicted RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	NRG2	O14511	850 aa	Predicted RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	TBX3	O15119	743 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	GC	P02774	474 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	KRT18	P05783	430 aa	Known RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	NOS2	P35228	1153 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	FLT3	P36888	993 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	TRAPPC10	P48553	1259 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	PSEN2	P49810	448 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	AMPD3	Q01432	767 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	CALD1	Q05682	793 aa	Known RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	PSMD2	Q13200	908 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	PPP2R5A	Q15172	486 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	CHRNA2	Q15822	529 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	UVSSA	Q2YD98	709 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	EAPP	Q56P03	285 aa	Predicted RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	MYSM1	Q5VVJ2	828 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	TAF3	Q5VWG9	929 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	PPP2R2D	Q66LE6	453 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	MSL1	Q68DK7	614 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	BRINP3	Q76B58	766 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	FERMT3	Q86UX7	667 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	WDR75	Q8IWA0	830 aa	Known RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	HSCB	Q8IWL3	235 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	CHPF	Q8IZ52	775 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	NGEF	Q8N5V2	710 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	TEX19	Q8NA77	164 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	C8orf58	Q8NAV2	365 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	IP6K1	Q92551	441 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	FRAT1	Q92837	279 aa	Predicted RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	ASB16	Q96NS5	453 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	FMNL2	Q96PY5	1086 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	ARPC5L	Q9BPX5	153 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	BEGAIN	Q9BUH8	593 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	CRISPLD2	Q9H0B8	497 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	MUC3B	Q9H195	1237 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	SLK	Q9H2G2	1235 aa	Predicted RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	METTL5	Q9NRN9	209 aa	Known RBP	4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	MIS18A	Q9NYP9	233 aa		4.26	□□□□□ -1.73
SMG6-208	ENST00000570874	RAI14	Q9P0K7	980 aa		4.26	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms