RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 CSF1RP07333 972 aa15.42■□□□□ 0.06
CAPN3-220ENST00000569827 ANKRD2Q9GZV1 360 aa15.42■□□□□ 0.06
CAPN3-220ENST00000569827 ANKRD18BA2A2Z9 1011 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 PLIN1O60240 522 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 DLGAP5Q15398 846 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 EPHA10Q5JZY3 1008 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 SPRYD7Q5W111 196 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 DEFB129Q9H1M3 183 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 MYH16Q9H6N6 1097 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 VEZTQ9HBM0 779 aa15.41■□□□□ 0.06
CAPN3-220ENST00000569827 RBBP6Q7Z6E9 1792 aaKnown RBP15.4■□□□□ 0.06
CAPN3-220ENST00000569827 FOXO4P98177 505 aa15.4■□□□□ 0.06
CAPN3-220ENST00000569827 SREBF2Q12772 1141 aa15.4■□□□□ 0.06
CAPN3-220ENST00000569827 LDLRAD1Q5T700 205 aa15.4■□□□□ 0.06
CAPN3-220ENST00000569827 CHMP4AQ9BY43 222 aa15.4■□□□□ 0.06
CAPN3-220ENST00000569827 AK9Q5TCS8 1911 aa15.39■□□□□ 0.05
CAPN3-220ENST00000569827 FKTNO75072 461 aa15.39■□□□□ 0.05
CAPN3-220ENST00000569827 EXOSC9Q06265 439 aaKnown RBP15.39■□□□□ 0.05
CAPN3-220ENST00000569827 CFAP100Q494V2 611 aa15.39■□□□□ 0.05
CAPN3-220ENST00000569827 LINS1Q8NG48 757 aa15.39■□□□□ 0.05
CAPN3-220ENST00000569827 WNK4Q96J92 1243 aa15.39■□□□□ 0.05
CAPN3-220ENST00000569827 PRMT6Q96LA8 375 aaPredicted RBP15.39■□□□□ 0.05
CAPN3-220ENST00000569827 COL1A1P02452 1464 aaPredicted RBP15.39■□□□□ 0.05
CAPN3-220ENST00000569827 IGF2BP3O00425 579 aaKnown RBP eCLIP15.38■□□□□ 0.05
CAPN3-220ENST00000569827 RBM5P52756 815 aaKnown RBP eCLIP15.38■□□□□ 0.05
CAPN3-220ENST00000569827 CCDC27Q2M243 656 aa15.38■□□□□ 0.05
CAPN3-220ENST00000569827 NBPF12Q5TAG4 269 aaPredicted RBP15.38■□□□□ 0.05
CAPN3-220ENST00000569827 FBXO46Q6PJ61 603 aaPredicted RBP15.38■□□□□ 0.05
CAPN3-220ENST00000569827 SPDYE2BA6NHP3 402 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 VAMP4O75379 141 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 SPDYE6P0CI01 402 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 GJA5P36382 358 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 IFIT5Q13325 482 aaKnown RBP15.37■□□□□ 0.05
CAPN3-220ENST00000569827 PKN2Q16513 984 aaKnown RBP15.37■□□□□ 0.05
CAPN3-220ENST00000569827 LMBR1LQ6UX01 489 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 CDAN1Q8IWY9 1227 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 SLC10A4Q96EP9 437 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 SPINK5Q9NQ38 1064 aaPredicted RBP15.37■□□□□ 0.05
CAPN3-220ENST00000569827 TRIM17Q9Y577 477 aa15.37■□□□□ 0.05
CAPN3-220ENST00000569827 CAP1Q01518 475 aa15.36■□□□□ 0.05
CAPN3-220ENST00000569827 PRPF38BQ5VTL8 546 aaKnown RBP15.36■□□□□ 0.05
CAPN3-220ENST00000569827 ZNF804AQ7Z570 1209 aa15.36■□□□□ 0.05
CAPN3-220ENST00000569827 IFNL1Q8IU54 200 aa15.36■□□□□ 0.05
CAPN3-220ENST00000569827 IL16Q14005 1332 aa15.36■□□□□ 0.05
CAPN3-220ENST00000569827 IL1R1P14778 569 aa15.35■□□□□ 0.05
CAPN3-220ENST00000569827 TAF7LQ5H9L4 462 aa15.35■□□□□ 0.05
CAPN3-220ENST00000569827 BEND3Q5T5X7 828 aa15.35■□□□□ 0.05
CAPN3-220ENST00000569827 CNNM1Q9NRU3 951 aa15.35■□□□□ 0.05
CAPN3-220ENST00000569827 CEP290O15078 2479 aa15.35■□□□□ 0.05
CAPN3-220ENST00000569827 POTEFA5A3E0 1075 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 MANSC4A6NHS7 340 aaPredicted RBP15.34■□□□□ 0.05
CAPN3-220ENST00000569827 GYG1P46976 350 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 RASA3Q14644 834 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 OTOP1Q7RTM1 612 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 MTMR14Q8NCE2 650 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 CD99L2Q8TCZ2 262 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 CNKSR2Q8WXI2 1034 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 PUS3Q9BZE2 481 aaKnown RBP15.34■□□□□ 0.05
CAPN3-220ENST00000569827 ELP3Q9H9T3 547 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 MRS2Q9HD23 443 aa15.34■□□□□ 0.05
CAPN3-220ENST00000569827 IQSEC3Q9UPP2 1182 aaPredicted RBP15.34■□□□□ 0.05
CAPN3-220ENST00000569827 MYO1BO43795 1136 aa15.33■□□□□ 0.04
CAPN3-220ENST00000569827 PPP1R12BO60237 982 aaPredicted RBP15.33■□□□□ 0.04
CAPN3-220ENST00000569827 USP2O75604 605 aaPredicted RBP15.33■□□□□ 0.04
CAPN3-220ENST00000569827 CRHR2Q13324 411 aa15.33■□□□□ 0.04
CAPN3-220ENST00000569827 GRIK5Q16478 980 aa15.33■□□□□ 0.04
CAPN3-220ENST00000569827 MAP3K11Q16584 847 aa15.33■□□□□ 0.04
CAPN3-220ENST00000569827 NOM1Q5C9Z4 860 aaKnown RBP15.33■□□□□ 0.04
CAPN3-220ENST00000569827 SLC4A10Q6U841 1118 aa15.33■□□□□ 0.04
CAPN3-220ENST00000569827 LDHAL6AQ6ZMR3 332 aa15.33■□□□□ 0.04
CAPN3-220ENST00000569827 C15orf52Q6ZUT6 534 aaKnown RBP15.33■□□□□ 0.04
CAPN3-220ENST00000569827 CFHR5Q9BXR6 569 aa15.33■□□□□ 0.04
CAPN3-220ENST00000569827 TDRD3Q9H7E2 651 aaKnown RBP15.33■□□□□ 0.04
CAPN3-220ENST00000569827 GRM8O00222 908 aa15.32■□□□□ 0.04
CAPN3-220ENST00000569827 CCDC57Q2TAC2 916 aa15.32■□□□□ 0.04
CAPN3-220ENST00000569827 MFSD14BQ5SR56 506 aa15.32■□□□□ 0.04
CAPN3-220ENST00000569827 PTPN18Q99952 460 aa15.32■□□□□ 0.04
CAPN3-220ENST00000569827 TTF2Q9UNY4 1162 aaKnown RBP15.32■□□□□ 0.04
CAPN3-220ENST00000569827 TCP10L2B9ZVM9 353 aa15.31■□□□□ 0.04
CAPN3-220ENST00000569827 ZBTB48P10074 688 aaPredicted RBP15.31■□□□□ 0.04
CAPN3-220ENST00000569827 MMP14P50281 582 aa15.31■□□□□ 0.04
CAPN3-220ENST00000569827 SUCLG2Q96I99 432 aa15.31■□□□□ 0.04
CAPN3-220ENST00000569827 ZNF70Q9UC06 446 aaPredicted RBP15.31■□□□□ 0.04
CAPN3-220ENST00000569827 ALDH1A1P00352 501 aa15.3■□□□□ 0.04
CAPN3-220ENST00000569827 IREB2P48200 963 aaKnown RBP15.3■□□□□ 0.04
CAPN3-220ENST00000569827 CACNB3P54284 484 aa15.3■□□□□ 0.04
CAPN3-220ENST00000569827 SUPT20HL1Q3ZLR7 823 aa15.3■□□□□ 0.04
CAPN3-220ENST00000569827 SPDYE2Q495Y8 402 aa15.3■□□□□ 0.04
CAPN3-220ENST00000569827 OPTNQ96CV9 577 aa15.3■□□□□ 0.04
CAPN3-220ENST00000569827 TMEM39BQ9GZU3 492 aa15.3■□□□□ 0.04
CAPN3-220ENST00000569827 C9orf78Q9NZ63 289 aaPredicted RBP15.3■□□□□ 0.04
CAPN3-220ENST00000569827 PPP2R3BQ9Y5P8 575 aa15.3■□□□□ 0.04
CAPN3-220ENST00000569827 FAM205AQ6ZU69 1335 aa15.29■□□□□ 0.04
CAPN3-220ENST00000569827 CHAF1AQ13111 956 aaPredicted RBP15.29■□□□□ 0.04
CAPN3-220ENST00000569827 TDRD7Q8NHU6 1098 aaKnown RBP15.29■□□□□ 0.04
CAPN3-220ENST00000569827 KAZALD1Q96I82 304 aa15.29■□□□□ 0.04
CAPN3-220ENST00000569827 FAM84BQ96KN1 310 aaPredicted RBP15.29■□□□□ 0.04
CAPN3-220ENST00000569827 ECM2O94769 699 aaPredicted RBP15.28■□□□□ 0.04
CAPN3-220ENST00000569827 NBPF7P0C2Y1 421 aaPredicted RBP15.28■□□□□ 0.04
CAPN3-220ENST00000569827 HIBADHP31937 336 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms