RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CERS5Q8N5B7 392 aa23.31■■□□□ 1.32
CLN3-227ENST00000567495 C2orf69Q8N8R5 385 aa23.31■■□□□ 1.32
CLN3-227ENST00000567495 CLUAP1Q96AJ1 413 aa23.31■■□□□ 1.32
CLN3-227ENST00000567495 CEP126Q9P2H0 1117 aa23.31■■□□□ 1.32
CLN3-227ENST00000567495 GNAI2P04899 355 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 HSPA1AP0DMV8 641 aaKnown RBP23.3■■□□□ 1.32
CLN3-227ENST00000567495 HSPA1BP0DMV9 641 aaKnown RBP23.3■■□□□ 1.32
CLN3-227ENST00000567495 FGFR2P21802 821 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 IL15P40933 162 aaPredicted RBP23.3■■□□□ 1.32
CLN3-227ENST00000567495 DLGAP5Q15398 846 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 NBPF9Q3BBW0 867 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 PAXIP1Q6ZW49 1069 aaPredicted RBP23.3■■□□□ 1.32
CLN3-227ENST00000567495 MTMR14Q8NCE2 650 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 LPIN2Q92539 896 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 CAPNS2Q96L46 248 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 COPRSQ9NQ92 184 aa23.3■■□□□ 1.32
CLN3-227ENST00000567495 SLC5A1P13866 664 aa23.29■■□□□ 1.32
CLN3-227ENST00000567495 MFSD14BQ5SR56 506 aa23.29■■□□□ 1.32
CLN3-227ENST00000567495 ATG9AQ7Z3C6 839 aa23.29■■□□□ 1.32
CLN3-227ENST00000567495 ZBED3Q96IU2 234 aaPredicted RBP23.29■■□□□ 1.32
CLN3-227ENST00000567495 GBA2Q9HCG7 927 aaPredicted RBP23.29■■□□□ 1.32
CLN3-227ENST00000567495 FRAT2O75474 233 aaPredicted RBP23.28■■□□□ 1.32
CLN3-227ENST00000567495 FTSJ3Q8IY81 847 aaKnown RBP23.28■■□□□ 1.32
CLN3-227ENST00000567495 TBC1D22AQ8WUA7 517 aa23.28■■□□□ 1.32
CLN3-227ENST00000567495 CDCA5Q96FF9 252 aa23.28■■□□□ 1.32
CLN3-227ENST00000567495 SIL1Q9H173 461 aa23.28■■□□□ 1.32
CLN3-227ENST00000567495 SRGAP3O43295 1099 aa23.27■■□□□ 1.32
CLN3-227ENST00000567495 FKBP1BP68106 108 aa23.27■■□□□ 1.32
CLN3-227ENST00000567495 MAP2K1Q02750 393 aaPredicted RBP23.27■■□□□ 1.32
CLN3-227ENST00000567495 APOBEC3FQ8IUX4 373 aaKnown RBP23.27■■□□□ 1.32
CLN3-227ENST00000567495 DZIP1LQ8IYY4 767 aaKnown RBP23.27■■□□□ 1.32
CLN3-227ENST00000567495 TMEM57Q8N5G2 664 aa23.27■■□□□ 1.32
CLN3-227ENST00000567495 TRPM7Q96QT4 1865 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 MYO1BO43795 1136 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 MAP2K2P36507 400 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 HUNKP57058 714 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 CYP4F22Q6NT55 531 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 DLK2Q6UY11 383 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 AIDAQ96BJ3 306 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 PCNTO95613 3336 aa23.26■■□□□ 1.31
CLN3-227ENST00000567495 BCAMP50895 628 aa23.25■■□□□ 1.31
CLN3-227ENST00000567495 WBP1LQ9NX94 342 aa23.25■■□□□ 1.31
CLN3-227ENST00000567495 TNNQ9UQP3 1299 aa23.25■■□□□ 1.31
CLN3-227ENST00000567495 JAG2Q9Y219 1238 aa23.25■■□□□ 1.31
CLN3-227ENST00000567495 A0A1B0GUL6 1792 aa23.24■■□□□ 1.31
CLN3-227ENST00000567495 F8W031 263 aaPredicted RBP23.24■■□□□ 1.31
CLN3-227ENST00000567495 ATP2B3Q16720 1220 aa23.24■■□□□ 1.31
CLN3-227ENST00000567495 GNL3LQ9NVN8 582 aaKnown RBP23.24■■□□□ 1.31
CLN3-227ENST00000567495 SERPINA10Q9UK55 444 aa23.24■■□□□ 1.31
CLN3-227ENST00000567495 SUGT1Q9Y2Z0 365 aa23.24■■□□□ 1.31
CLN3-227ENST00000567495 SPDYE2BA6NHP3 402 aa23.23■■□□□ 1.31
CLN3-227ENST00000567495 SPDYE6P0CI01 402 aa23.23■■□□□ 1.31
CLN3-227ENST00000567495 MS4A1P11836 297 aa23.23■■□□□ 1.31
CLN3-227ENST00000567495 NF2P35240 595 aa23.23■■□□□ 1.31
CLN3-227ENST00000567495 CFAP100Q494V2 611 aa23.23■■□□□ 1.31
CLN3-227ENST00000567495 TTF2Q9UNY4 1162 aaKnown RBP23.23■■□□□ 1.31
CLN3-227ENST00000567495 PA2G4Q9UQ80 394 aaKnown RBP23.23■■□□□ 1.31
CLN3-227ENST00000567495 GRM1Q13255 1194 aa23.22■■□□□ 1.31
CLN3-227ENST00000567495 CCDC102AQ96A19 550 aa23.22■■□□□ 1.31
CLN3-227ENST00000567495 RBM5P52756 815 aaKnown RBP eCLIP23.21■■□□□ 1.31
CLN3-227ENST00000567495 HDLBPQ00341 1268 aaKnown RBP23.21■■□□□ 1.31
CLN3-227ENST00000567495 CHAF1AQ13111 956 aaPredicted RBP23.21■■□□□ 1.31
CLN3-227ENST00000567495 NOGQ13253 232 aa23.21■■□□□ 1.31
CLN3-227ENST00000567495 RGMBQ6NW40 437 aa23.21■■□□□ 1.31
CLN3-227ENST00000567495 ITPRIPQ8IWB1 547 aa23.21■■□□□ 1.31
CLN3-227ENST00000567495 IQSEC3Q9UPP2 1182 aaPredicted RBP23.21■■□□□ 1.31
CLN3-227ENST00000567495 AKAP2Q9Y2D5 859 aa23.21■■□□□ 1.31
CLN3-227ENST00000567495 PPP2R3BQ9Y5P8 575 aa23.21■■□□□ 1.31
CLN3-227ENST00000567495 ZNF646O15015 1829 aaPredicted RBP23.2■■□□□ 1.3
CLN3-227ENST00000567495 ZBTB22O15209 634 aa23.2■■□□□ 1.3
CLN3-227ENST00000567495 WDR66Q8TBY9 1149 aa23.2■■□□□ 1.3
CLN3-227ENST00000567495 PRMT6Q96LA8 375 aaPredicted RBP23.2■■□□□ 1.3
CLN3-227ENST00000567495 BEGAINQ9BUH8 593 aa23.2■■□□□ 1.3
CLN3-227ENST00000567495 MRIQ9BWK5 157 aa23.2■■□□□ 1.3
CLN3-227ENST00000567495 SEMA3EO15041 775 aa23.19■■□□□ 1.3
CLN3-227ENST00000567495 CTCFP49711 727 aaPredicted RBP23.19■■□□□ 1.3
CLN3-227ENST00000567495 DEFB129Q9H1M3 183 aa23.19■■□□□ 1.3
CLN3-227ENST00000567495 COL1A1P02452 1464 aaPredicted RBP23.18■■□□□ 1.3
CLN3-227ENST00000567495 MAST3O60307 1309 aa23.18■■□□□ 1.3
CLN3-227ENST00000567495 ZBTB7BO15156 539 aaPredicted RBP23.17■■□□□ 1.3
CLN3-227ENST00000567495 RLBP1P12271 317 aa23.17■■□□□ 1.3
CLN3-227ENST00000567495 ZNF157P51786 506 aaPredicted RBP23.17■■□□□ 1.3
CLN3-227ENST00000567495 G3BP1Q13283 466 aaKnown RBP eCLIP23.17■■□□□ 1.3
CLN3-227ENST00000567495 TNFAIP1Q13829 316 aa23.17■■□□□ 1.3
CLN3-227ENST00000567495 SCAF8Q9UPN6 1271 aaKnown RBP23.17■■□□□ 1.3
CLN3-227ENST00000567495 POLR2AP24928 1970 aaKnown RBP23.17■■□□□ 1.3
CLN3-227ENST00000567495 PNMA6EA0A0J9YXQ4 647 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 FOXN1O15353 648 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 CA12O43570 354 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 AOC2O75106 756 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 CRKP46108 304 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 PRAMEF18Q5VWM3 479 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 TEKT1Q969V4 418 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 DENND2AQ9ULE3 1009 aa23.16■■□□□ 1.3
CLN3-227ENST00000567495 ATP8B2P98198 1209 aa23.15■■□□□ 1.3
CLN3-227ENST00000567495 TTLL12Q14166 644 aaPredicted RBP23.15■■□□□ 1.3
CLN3-227ENST00000567495 SUPT20HL1Q3ZLR7 823 aa23.15■■□□□ 1.3
CLN3-227ENST00000567495 SPDYE2Q495Y8 402 aa23.15■■□□□ 1.3
CLN3-227ENST00000567495 ARMC9Q7Z3E5 817 aa23.15■■□□□ 1.3
CLN3-227ENST00000567495 VEZTQ9HBM0 779 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms