RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	AKAP11	Q9UKA4	1901 aa		18.77	■□□□□ 0.6
CLN3-222	ENST00000566083	NBPF7	P0C2Y1	421 aa	Predicted RBP	18.76	■□□□□ 0.59
CLN3-222	ENST00000566083	ALDH1L2	Q3SY69	923 aa		18.76	■□□□□ 0.59
CLN3-222	ENST00000566083	SUCLG2	Q96I99	432 aa		18.76	■□□□□ 0.59
CLN3-222	ENST00000566083	SNAP23	O00161	211 aa		18.75	■□□□□ 0.59
CLN3-222	ENST00000566083	TRPA1	O75762	1119 aa		18.75	■□□□□ 0.59
CLN3-222	ENST00000566083	CT47B1	P0C2W7	299 aa	Predicted RBP	18.75	■□□□□ 0.59
CLN3-222	ENST00000566083	RABL6	Q3YEC7	729 aa	Predicted RBP	18.75	■□□□□ 0.59
CLN3-222	ENST00000566083	ZNF646	O15015	1829 aa	Predicted RBP	18.75	■□□□□ 0.59
CLN3-222	ENST00000566083	UNCX	A6NJT0	531 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	UBE2Q2L	H0YL09	131 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	HIBADH	P31937	336 aa	Known RBP	18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	SLFN5	Q08AF3	891 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	CERS5	Q8N5B7	392 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	DEFB129	Q9H1M3	183 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	FAM205A	Q6ZU69	1335 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	DGKZ	Q13574	1117 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	SUPT20HL1	Q3ZLR7	823 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	PRAMEF18	Q5VWM3	479 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	TDRD7	Q8NHU6	1098 aa	Known RBP	18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	SSH1	Q8WYL5	1049 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	KAZALD1	Q96I82	304 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	MCOLN1	Q9GZU1	580 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	BICC1	Q9H694	974 aa	Known RBP	18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	RIPOR2	Q9Y4F9	1068 aa		18.74	■□□□□ 0.59
CLN3-222	ENST00000566083	SPDYE2B	A6NHP3	402 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	CCDC85C	A6NKD9	419 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	PPP1R12B	O60237	982 aa	Predicted RBP	18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	SPDYE6	P0CI01	402 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	SREBF2	Q12772	1141 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	TNFAIP1	Q13829	316 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	CFAP100	Q494V2	611 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	CAVIN4	Q5BKX8	364 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	VPS37D	Q86XT2	251 aa		18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	SCAF8	Q9UPN6	1271 aa	Known RBP	18.73	■□□□□ 0.59
CLN3-222	ENST00000566083	MFSD14B	Q5SR56	506 aa		18.72	■□□□□ 0.59
CLN3-222	ENST00000566083	MOB2	Q70IA6	237 aa		18.72	■□□□□ 0.59
CLN3-222	ENST00000566083	FAM84B	Q96KN1	310 aa	Predicted RBP	18.72	■□□□□ 0.59
CLN3-222	ENST00000566083	SERPINA10	Q9UK55	444 aa		18.72	■□□□□ 0.59
CLN3-222	ENST00000566083	HDAC5	Q9UQL6	1122 aa		18.72	■□□□□ 0.59
CLN3-222	ENST00000566083		F8W031	263 aa	Predicted RBP	18.71	■□□□□ 0.59
CLN3-222	ENST00000566083	TM4SF4	P48230	202 aa		18.71	■□□□□ 0.59
CLN3-222	ENST00000566083	RBM5	P52756	815 aa	Known RBP eCLIP	18.71	■□□□□ 0.59
CLN3-222	ENST00000566083	LDLRAD1	Q5T700	205 aa		18.71	■□□□□ 0.59
CLN3-222	ENST00000566083	TBC1D22A	Q8WUA7	517 aa		18.71	■□□□□ 0.59
CLN3-222	ENST00000566083		A0A1B0GUL6	1792 aa		18.7	■□□□□ 0.58
CLN3-222	ENST00000566083	INHBE	P58166	350 aa		18.7	■□□□□ 0.58
CLN3-222	ENST00000566083	MAP3K11	Q16584	847 aa		18.7	■□□□□ 0.58
CLN3-222	ENST00000566083	METTL24	Q5JXM2	366 aa		18.7	■□□□□ 0.58
CLN3-222	ENST00000566083	PUS3	Q9BZE2	481 aa	Known RBP	18.7	■□□□□ 0.58
CLN3-222	ENST00000566083	USP44	Q9H0E7	712 aa		18.7	■□□□□ 0.58
CLN3-222	ENST00000566083	ANGEL1	Q9UNK9	670 aa	Known RBP	18.7	■□□□□ 0.58
CLN3-222	ENST00000566083	CCER2	I3L3R5	266 aa		18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	PDE8B	O95263	885 aa		18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	GYG1	P46976	350 aa		18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	PTPN12	Q05209	780 aa	Known RBP	18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	NOM1	Q5C9Z4	860 aa	Known RBP	18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	ANKRD44	Q8N8A2	993 aa		18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	PRMT6	Q96LA8	375 aa	Predicted RBP	18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	SMC4	Q9NTJ3	1288 aa		18.69	■□□□□ 0.58
CLN3-222	ENST00000566083	KIF16B	Q96L93	1317 aa		18.68	■□□□□ 0.58
CLN3-222	ENST00000566083	FRAT2	O75474	233 aa	Predicted RBP	18.68	■□□□□ 0.58
CLN3-222	ENST00000566083	ALDH1A1	P00352	501 aa		18.68	■□□□□ 0.58
CLN3-222	ENST00000566083	FBXO33	Q7Z6M2	555 aa		18.68	■□□□□ 0.58
CLN3-222	ENST00000566083	SLC10A4	Q96EP9	437 aa		18.68	■□□□□ 0.58
CLN3-222	ENST00000566083	VEZT	Q9HBM0	779 aa		18.68	■□□□□ 0.58
CLN3-222	ENST00000566083	TTF2	Q9UNY4	1162 aa	Known RBP	18.68	■□□□□ 0.58
CLN3-222	ENST00000566083	IREB2	P48200	963 aa	Known RBP	18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	RGS19	P49795	217 aa		18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	HDLBP	Q00341	1268 aa	Known RBP	18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	PKN2	Q16513	984 aa	Known RBP	18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	CTU1	Q7Z7A3	348 aa	Known RBP	18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	TRMT2A	Q8IZ69	625 aa	Known RBP	18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	FBXO3	Q9UK99	471 aa		18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	ECM29	Q5VYK3	1845 aa		18.67	■□□□□ 0.58
CLN3-222	ENST00000566083	IFIT1	P09914	478 aa	Known RBP	18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	ZBTB48	P10074	688 aa	Predicted RBP	18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	TNNI2	P48788	182 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	PRKG1	Q13976	671 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	PUM3	Q15397	648 aa	Known RBP	18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	SPRYD7	Q5W111	196 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	JAG2	Q9Y219	1238 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	SUGT1	Q9Y2Z0	365 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	CLRN2	A0PK11	232 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	MANSC4	A6NHS7	340 aa	Predicted RBP	18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	MLLT1	Q03111	559 aa	Predicted RBP	18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	SPDYE2	Q495Y8	402 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	LRRC24	Q50LG9	513 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	MRI	Q9BWK5	157 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	CFHR5	Q9BXR6	569 aa		18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	API5	Q9BZZ5	524 aa	Known RBP	18.66	■□□□□ 0.58
CLN3-222	ENST00000566083	UBTFL1	P0CB47	393 aa	Predicted RBP	18.65	■□□□□ 0.58
CLN3-222	ENST00000566083	RASA3	Q14644	834 aa		18.65	■□□□□ 0.58
CLN3-222	ENST00000566083	DZIP1L	Q8IYY4	767 aa	Known RBP	18.65	■□□□□ 0.58
CLN3-222	ENST00000566083	VGLL2	Q8N8G2	317 aa		18.65	■□□□□ 0.58
CLN3-222	ENST00000566083	CDCA7L	Q96GN5	454 aa		18.65	■□□□□ 0.58
CLN3-222	ENST00000566083	MAST3	O60307	1309 aa		18.64	■□□□□ 0.57
CLN3-222	ENST00000566083	EYA2	O00167	538 aa		18.64	■□□□□ 0.57
CLN3-222	ENST00000566083	ANKRD13A	Q8IZ07	590 aa		18.64	■□□□□ 0.57
CLN3-222	ENST00000566083	ZNF70	Q9UC06	446 aa	Predicted RBP	18.64	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms