RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 KCNJ4P48050 445 aa12.25□□□□□ -0.45
CLN3-220ENST00000566040 MAP1SQ66K74 1059 aaPredicted RBP12.25□□□□□ -0.45
CLN3-220ENST00000566040 CHADLQ6NUI6 762 aa12.25□□□□□ -0.45
CLN3-220ENST00000566040 ZNF804AQ7Z570 1209 aa12.25□□□□□ -0.45
CLN3-220ENST00000566040 LPIN2Q92539 896 aa12.25□□□□□ -0.45
CLN3-220ENST00000566040 CRBNQ96SW2 442 aa12.25□□□□□ -0.45
CLN3-220ENST00000566040 PCDHB15Q9Y5E8 787 aa12.25□□□□□ -0.45
CLN3-220ENST00000566040 A0A1B0GUL7 405 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 SSC5DA1L4H1 1573 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 SIPA1L1O43166 1804 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 MS4A1P11836 297 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 HIBADHP31937 336 aaKnown RBP12.24□□□□□ -0.45
CLN3-220ENST00000566040 TIMM10P62072 90 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 FKBP1AP62942 108 aaKnown RBP12.24□□□□□ -0.45
CLN3-220ENST00000566040 HTRA3P83110 453 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 FSTL1Q12841 308 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 SCARF1Q14162 830 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 TBC1D10BQ4KMP7 808 aaPredicted RBP12.24□□□□□ -0.45
CLN3-220ENST00000566040 USP50Q70EL3 339 aaPredicted RBP12.24□□□□□ -0.45
CLN3-220ENST00000566040 TLR7Q9NYK1 1049 aaKnown RBP12.24□□□□□ -0.45
CLN3-220ENST00000566040 HDAC5Q9UQL6 1122 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 EXOC6BQ9Y2D4 811 aa12.24□□□□□ -0.45
CLN3-220ENST00000566040 EAPPQ56P03 285 aaPredicted RBP12.23□□□□□ -0.45
CLN3-220ENST00000566040 TTLL5Q6EMB2 1281 aa12.23□□□□□ -0.45
CLN3-220ENST00000566040 SMC1BQ8NDV3 1235 aa12.23□□□□□ -0.45
CLN3-220ENST00000566040 ZNF384Q8TF68 577 aa12.23□□□□□ -0.45
CLN3-220ENST00000566040 CEP126Q9P2H0 1117 aa12.23□□□□□ -0.45
CLN3-220ENST00000566040 DDX60LQ5H9U9 1706 aaKnown RBP12.23□□□□□ -0.45
CLN3-220ENST00000566040 TRAF5O00463 557 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 SLC5A1P13866 664 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 HSPA6P17066 643 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 LMOD1P29536 600 aaPredicted RBP12.22□□□□□ -0.45
CLN3-220ENST00000566040 RASGRF1Q13972 1273 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 KIF4BQ2VIQ3 1234 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 NBPF9Q3BBW0 867 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 TNNI3KQ59H18 835 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 CCDC102BQ68D86 513 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 PI16Q6UXB8 463 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 PNMA8AQ86V59 439 aaPredicted RBP12.22□□□□□ -0.45
CLN3-220ENST00000566040 KIAA0825Q8IV33 1275 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 EAF2Q96CJ1 260 aaPredicted RBP12.22□□□□□ -0.45
CLN3-220ENST00000566040 XAGE2Q96GT9 111 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 MYOZ2Q9NPC6 264 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 DBNLQ9UJU6 430 aaKnown RBP12.22□□□□□ -0.45
CLN3-220ENST00000566040 FPGT-TNNI3KV9GXZ4 949 aa12.22□□□□□ -0.45
CLN3-220ENST00000566040 MYO3BQ8WXR4 1341 aa12.21□□□□□ -0.45
CLN3-220ENST00000566040 SURF6O75683 361 aaKnown RBP12.21□□□□□ -0.45
CLN3-220ENST00000566040 IFIT1P09914 478 aaKnown RBP12.21□□□□□ -0.45
CLN3-220ENST00000566040 USP17L8P0C7I0 530 aa12.21□□□□□ -0.45
CLN3-220ENST00000566040 RPAP2Q8IXW5 612 aaPredicted RBP12.21□□□□□ -0.45
CLN3-220ENST00000566040 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.21□□□□□ -0.45
CLN3-220ENST00000566040 DBNDD2Q9BQY9 259 aa12.21□□□□□ -0.45
CLN3-220ENST00000566040 GLIS2Q9BZE0 524 aaPredicted RBP12.21□□□□□ -0.45
CLN3-220ENST00000566040 GPR108Q9NPR9 543 aa12.21□□□□□ -0.45
CLN3-220ENST00000566040 PDS5AQ29RF7 1337 aaKnown RBP12.2□□□□□ -0.46
CLN3-220ENST00000566040 WNT10BO00744 389 aa12.2□□□□□ -0.46
CLN3-220ENST00000566040 ARID4AP29374 1257 aaPredicted RBP12.2□□□□□ -0.46
CLN3-220ENST00000566040 MFSD14BQ5SR56 506 aa12.2□□□□□ -0.46
CLN3-220ENST00000566040 C16orf71Q8IYS4 520 aaPredicted RBP12.2□□□□□ -0.46
CLN3-220ENST00000566040 CNTROBQ8N137 903 aa12.2□□□□□ -0.46
CLN3-220ENST00000566040 MTMR14Q8NCE2 650 aa12.2□□□□□ -0.46
CLN3-220ENST00000566040 FBXW7Q969H0 707 aa12.2□□□□□ -0.46
CLN3-220ENST00000566040 GGA3Q9NZ52 723 aa12.2□□□□□ -0.46
CLN3-220ENST00000566040 SCAF8Q9UPN6 1271 aaKnown RBP12.2□□□□□ -0.46
CLN3-220ENST00000566040 RFX7Q2KHR2 1363 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 SALL1Q9NSC2 1324 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 ADM5C9JUS6 153 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 G3V3G9 751 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 MCAMP43121 646 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 DCAF8Q5TAQ9 597 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 CST9Q5W186 159 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 DNAJC5GQ8N7S2 189 aa12.19□□□□□ -0.46
CLN3-220ENST00000566040 ZC3H15Q8WU90 426 aaKnown RBP12.19□□□□□ -0.46
CLN3-220ENST00000566040 F8W031 263 aaPredicted RBP12.18□□□□□ -0.46
CLN3-220ENST00000566040 H7C1D1 291 aa12.18□□□□□ -0.46
CLN3-220ENST00000566040 PRDX5P30044 214 aa12.18□□□□□ -0.46
CLN3-220ENST00000566040 CHAF1AQ13111 956 aaPredicted RBP12.18□□□□□ -0.46
CLN3-220ENST00000566040 G3BP1Q13283 466 aaKnown RBP eCLIP12.18□□□□□ -0.46
CLN3-220ENST00000566040 RBM26Q5T8P6 1007 aaKnown RBP12.18□□□□□ -0.46
CLN3-220ENST00000566040 EXOC6Q8TAG9 804 aa12.18□□□□□ -0.46
CLN3-220ENST00000566040 RHPN1Q8TCX5 695 aa12.18□□□□□ -0.46
CLN3-220ENST00000566040 PRMT6Q96LA8 375 aaPredicted RBP12.18□□□□□ -0.46
CLN3-220ENST00000566040 HMG20BQ9P0W2 317 aa12.18□□□□□ -0.46
CLN3-220ENST00000566040 SUPT16HQ9Y5B9 1047 aaKnown RBP12.18□□□□□ -0.46
CLN3-220ENST00000566040 PITPNM2Q9BZ72 1349 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 SPDYE2BA6NHP3 402 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 SPDYE6P0CI01 402 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 APLP1P51693 650 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 CAVIN4Q5BKX8 364 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 ANGEL2Q5VTE6 544 aaKnown RBP12.17□□□□□ -0.46
CLN3-220ENST00000566040 CDAN1Q8IWY9 1227 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 CCDC8Q9H0W5 538 aaPredicted RBP12.17□□□□□ -0.46
CLN3-220ENST00000566040 IL1RAPL2Q9NP60 686 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 AKAP2Q9Y2D5 859 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 CNTNAP1P78357 1384 aa12.17□□□□□ -0.46
CLN3-220ENST00000566040 SEMA3EO15041 775 aa12.16□□□□□ -0.46
CLN3-220ENST00000566040 CFAP100Q494V2 611 aa12.16□□□□□ -0.46
CLN3-220ENST00000566040 DCTPP1Q9H773 170 aa12.16□□□□□ -0.46
CLN3-220ENST00000566040 TTF2Q9UNY4 1162 aaKnown RBP12.16□□□□□ -0.46
CLN3-220ENST00000566040 CLEC11AQ9Y240 323 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms