RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RASAL3Q86YV0 1011 aa21.48■■□□□ 1.03
CLN3-217ENST00000565354 ZC3H12CQ9C0D7 883 aaKnown RBP21.48■■□□□ 1.03
CLN3-217ENST00000565354 ANKRD2Q9GZV1 360 aa21.48■■□□□ 1.03
CLN3-217ENST00000565354 MINPP1Q9UNW1 487 aa21.48■■□□□ 1.03
CLN3-217ENST00000565354 XDHP47989 1333 aa21.48■■□□□ 1.03
CLN3-217ENST00000565354 PAPPA2Q9BXP8 1791 aa21.48■■□□□ 1.03
CLN3-217ENST00000565354 UFL1O94874 794 aa21.47■■□□□ 1.03
CLN3-217ENST00000565354 PODXL2Q9NZ53 605 aa21.47■■□□□ 1.03
CLN3-217ENST00000565354 ZNF609O15014 1411 aa21.46■■□□□ 1.03
CLN3-217ENST00000565354 ZBTB7BO15156 539 aaPredicted RBP21.46■■□□□ 1.03
CLN3-217ENST00000565354 ATP2B4P23634 1241 aa21.46■■□□□ 1.03
CLN3-217ENST00000565354 KCNJ4P48050 445 aa21.46■■□□□ 1.03
CLN3-217ENST00000565354 ZNF280AP59817 542 aaPredicted RBP21.46■■□□□ 1.03
CLN3-217ENST00000565354 FKBP1BP68106 108 aa21.46■■□□□ 1.03
CLN3-217ENST00000565354 C20orf194Q5TEA3 1177 aa21.46■■□□□ 1.03
CLN3-217ENST00000565354 ANGEL2Q5VTE6 544 aaKnown RBP21.46■■□□□ 1.03
CLN3-217ENST00000565354 G3V3G9 751 aa21.45■■□□□ 1.02
CLN3-217ENST00000565354 CHRNDQ07001 517 aa21.45■■□□□ 1.02
CLN3-217ENST00000565354 SCARF1Q14162 830 aa21.45■■□□□ 1.02
CLN3-217ENST00000565354 DCAF8Q5TAQ9 597 aa21.45■■□□□ 1.02
CLN3-217ENST00000565354 AGBL3Q8NEM8 1001 aa21.45■■□□□ 1.02
CLN3-217ENST00000565354 C1orf115Q9H7X2 142 aa21.45■■□□□ 1.02
CLN3-217ENST00000565354 SRGAP3O43295 1099 aa21.44■■□□□ 1.02
CLN3-217ENST00000565354 RSBN1LQ6PCB5 846 aaPredicted RBP21.44■■□□□ 1.02
CLN3-217ENST00000565354 KLHDC4Q8TBB5 520 aa21.44■■□□□ 1.02
CLN3-217ENST00000565354 HPS5Q9UPZ3 1129 aa21.44■■□□□ 1.02
CLN3-217ENST00000565354 PKN2Q16513 984 aaKnown RBP21.43■■□□□ 1.02
CLN3-217ENST00000565354 HELBQ8NG08 1087 aaPredicted RBP21.42■■□□□ 1.02
CLN3-217ENST00000565354 PITPNM2Q9BZ72 1349 aa21.42■■□□□ 1.02
CLN3-217ENST00000565354 PUS3Q9BZE2 481 aaKnown RBP21.42■■□□□ 1.02
CLN3-217ENST00000565354 LEMD3Q9Y2U8 911 aa21.42■■□□□ 1.02
CLN3-217ENST00000565354 MROH5Q6ZUA9 1318 aa21.41■■□□□ 1.02
CLN3-217ENST00000565354 RFX5P48382 616 aaPredicted RBP21.41■■□□□ 1.02
CLN3-217ENST00000565354 METTL24Q5JXM2 366 aa21.41■■□□□ 1.02
CLN3-217ENST00000565354 GMLQ99445 158 aa21.41■■□□□ 1.02
CLN3-217ENST00000565354 SIL1Q9H173 461 aa21.41■■□□□ 1.02
CLN3-217ENST00000565354 MYOZ2Q9NPC6 264 aa21.41■■□□□ 1.02
CLN3-217ENST00000565354 HDAC9Q9UKV0 1011 aa21.41■■□□□ 1.02
CLN3-217ENST00000565354 ZNF804BA4D1E1 1349 aa21.4■■□□□ 1.02
CLN3-217ENST00000565354 TAF5LO75529 589 aa21.4■■□□□ 1.02
CLN3-217ENST00000565354 USP17L8P0C7I0 530 aa21.4■■□□□ 1.02
CLN3-217ENST00000565354 PTPN12Q05209 780 aaKnown RBP21.4■■□□□ 1.02
CLN3-217ENST00000565354 MTX1Q13505 466 aa21.4■■□□□ 1.02
CLN3-217ENST00000565354 LRRC24Q50LG9 513 aa21.4■■□□□ 1.02
CLN3-217ENST00000565354 EYA2O00167 538 aa21.39■■□□□ 1.01
CLN3-217ENST00000565354 MOB2Q70IA6 237 aa21.39■■□□□ 1.01
CLN3-217ENST00000565354 ZNF296Q8WUU4 475 aaPredicted RBP21.39■■□□□ 1.01
CLN3-217ENST00000565354 TBC1D8O95759 1140 aa21.38■■□□□ 1.01
CLN3-217ENST00000565354 ATP8B2P98198 1209 aa21.38■■□□□ 1.01
CLN3-217ENST00000565354 FBXO3Q9UK99 471 aa21.38■■□□□ 1.01
CLN3-217ENST00000565354 PA2G4Q9UQ80 394 aaKnown RBP21.38■■□□□ 1.01
CLN3-217ENST00000565354 RIPOR2Q9Y4F9 1068 aa21.38■■□□□ 1.01
CLN3-217ENST00000565354 PNMA6EA0A0J9YXQ4 647 aa21.37■■□□□ 1.01
CLN3-217ENST00000565354 UBE2Q2LH0YL09 131 aa21.37■■□□□ 1.01
CLN3-217ENST00000565354 COPRSQ9NQ92 184 aa21.37■■□□□ 1.01
CLN3-217ENST00000565354 SUPT16HQ9Y5B9 1047 aaKnown RBP21.37■■□□□ 1.01
CLN3-217ENST00000565354 MED23Q9ULK4 1368 aa21.36■■□□□ 1.01
CLN3-217ENST00000565354 A0A1B0GUL6 1792 aa21.36■■□□□ 1.01
CLN3-217ENST00000565354 USP17L3A6NCW0 530 aa21.36■■□□□ 1.01
CLN3-217ENST00000565354 USP17L4A6NCW7 530 aa21.36■■□□□ 1.01
CLN3-217ENST00000565354 NOM1Q5C9Z4 860 aaKnown RBP21.36■■□□□ 1.01
CLN3-217ENST00000565354 USP17L1Q7RTZ2 530 aa21.36■■□□□ 1.01
CLN3-217ENST00000565354 PODNQ7Z5L7 613 aa21.36■■□□□ 1.01
CLN3-217ENST00000565354 ZBTB40Q9NUA8 1239 aa21.36■■□□□ 1.01
CLN3-217ENST00000565354 SCAF8Q9UPN6 1271 aaKnown RBP21.36■■□□□ 1.01
CLN3-217ENST00000565354 CIAO1O76071 339 aa21.35■■□□□ 1.01
CLN3-217ENST00000565354 IL15P40933 162 aaPredicted RBP21.35■■□□□ 1.01
CLN3-217ENST00000565354 TM4SF4P48230 202 aa21.35■■□□□ 1.01
CLN3-217ENST00000565354 G3BP1Q13283 466 aaKnown RBP eCLIP21.35■■□□□ 1.01
CLN3-217ENST00000565354 OS9Q13438 667 aaPredicted RBP21.35■■□□□ 1.01
CLN3-217ENST00000565354 CEP85Q6P2H3 762 aa21.35■■□□□ 1.01
CLN3-217ENST00000565354 CEP126Q9P2H0 1117 aa21.35■■□□□ 1.01
CLN3-217ENST00000565354 ZNF646O15015 1829 aaPredicted RBP21.34■■□□□ 1.01
CLN3-217ENST00000565354 GPR25O00155 361 aa21.34■■□□□ 1.01
CLN3-217ENST00000565354 UBE4AQ14139 1066 aa21.34■■□□□ 1.01
CLN3-217ENST00000565354 PRAMEF18Q5VWM3 479 aa21.34■■□□□ 1.01
CLN3-217ENST00000565354 WTIPA6NIX2 430 aaPredicted RBP21.33■■□□□ 1.01
CLN3-217ENST00000565354 SNAP23O00161 211 aa21.33■■□□□ 1.01
CLN3-217ENST00000565354 HMMRO75330 724 aa21.33■■□□□ 1.01
CLN3-217ENST00000565354 PDE8BO95263 885 aa21.33■■□□□ 1.01
CLN3-217ENST00000565354 TTLL12Q14166 644 aaPredicted RBP21.33■■□□□ 1.01
CLN3-217ENST00000565354 NBPF9Q3BBW0 867 aa21.33■■□□□ 1.01
CLN3-217ENST00000565354 FBXO46Q6PJ61 603 aaPredicted RBP21.33■■□□□ 1.01
CLN3-217ENST00000565354 RPAP2Q8IXW5 612 aaPredicted RBP21.33■■□□□ 1.01
CLN3-217ENST00000565354 SSH3Q8TE77 659 aa21.33■■□□□ 1.01
CLN3-217ENST00000565354 CRBNQ96SW2 442 aa21.33■■□□□ 1.01
CLN3-217ENST00000565354 POLA2Q14181 598 aa21.32■■□□□ 1
CLN3-217ENST00000565354 ATG9AQ7Z3C6 839 aa21.32■■□□□ 1
CLN3-217ENST00000565354 SURF6O75683 361 aaKnown RBP21.31■■□□□ 1
CLN3-217ENST00000565354 IFIT1P09914 478 aaKnown RBP21.31■■□□□ 1
CLN3-217ENST00000565354 NF2P35240 595 aa21.31■■□□□ 1
CLN3-217ENST00000565354 PUM3Q15397 648 aaKnown RBP21.31■■□□□ 1
CLN3-217ENST00000565354 ZNF804AQ7Z570 1209 aa21.31■■□□□ 1
CLN3-217ENST00000565354 COA1Q9GZY4 146 aa21.31■■□□□ 1
CLN3-217ENST00000565354 SLC5A1P13866 664 aa21.3■■□□□ 1
CLN3-217ENST00000565354 KLRK1P26718 216 aa21.3■■□□□ 1
CLN3-217ENST00000565354 SREBF2Q12772 1141 aa21.3■■□□□ 1
CLN3-217ENST00000565354 VPS37DQ86XT2 251 aa21.3■■□□□ 1
CLN3-217ENST00000565354 FBXW7Q969H0 707 aa21.3■■□□□ 1
CLN3-217ENST00000565354 CFHR5Q9BXR6 569 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms