RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 CLUAP1Q96AJ1 413 aa22.99■■□□□ 1.27
CLN3-214ENST00000565140 PITPNM2Q9BZ72 1349 aa22.99■■□□□ 1.27
CLN3-214ENST00000565140 ECM29Q5VYK3 1845 aa22.98■■□□□ 1.27
CLN3-214ENST00000565140 MMP14P50281 582 aa22.98■■□□□ 1.27
CLN3-214ENST00000565140 FBXO33Q7Z6M2 555 aa22.98■■□□□ 1.27
CLN3-214ENST00000565140 CDCA5Q96FF9 252 aa22.98■■□□□ 1.27
CLN3-214ENST00000565140 ZBED3Q96IU2 234 aaPredicted RBP22.98■■□□□ 1.27
CLN3-214ENST00000565140 HDAC9Q9UKV0 1011 aa22.98■■□□□ 1.27
CLN3-214ENST00000565140 FAM205AQ6ZU69 1335 aa22.98■■□□□ 1.27
CLN3-214ENST00000565140 THSD7BQ9C0I4 1608 aa22.97■■□□□ 1.27
CLN3-214ENST00000565140 F8W031 263 aaPredicted RBP22.97■■□□□ 1.27
CLN3-214ENST00000565140 FKBP1AP62942 108 aaKnown RBP22.97■■□□□ 1.27
CLN3-214ENST00000565140 SIL1Q9H173 461 aa22.97■■□□□ 1.27
CLN3-214ENST00000565140 PCDHAC2Q9Y5I4 1007 aa22.97■■□□□ 1.27
CLN3-214ENST00000565140 FGFR2P21802 821 aa22.96■■□□□ 1.27
CLN3-214ENST00000565140 ECE1P42892 770 aa22.96■■□□□ 1.27
CLN3-214ENST00000565140 HHIPL1Q96JK4 782 aa22.96■■□□□ 1.27
CLN3-214ENST00000565140 GBA2Q9HCG7 927 aaPredicted RBP22.96■■□□□ 1.27
CLN3-214ENST00000565140 IQSEC3Q9UPP2 1182 aaPredicted RBP22.96■■□□□ 1.27
CLN3-214ENST00000565140 PA2G4Q9UQ80 394 aaKnown RBP22.96■■□□□ 1.27
CLN3-214ENST00000565140 HDAC5Q9UQL6 1122 aa22.96■■□□□ 1.27
CLN3-214ENST00000565140 ARAP2Q8WZ64 1704 aa22.96■■□□□ 1.27
CLN3-214ENST00000565140 AOC2O75106 756 aa22.95■■□□□ 1.26
CLN3-214ENST00000565140 GNAI3P08754 354 aa22.95■■□□□ 1.26
CLN3-214ENST00000565140 HUNKP57058 714 aa22.95■■□□□ 1.26
CLN3-214ENST00000565140 COL13A1Q5TAT6 717 aaPredicted RBP22.95■■□□□ 1.26
CLN3-214ENST00000565140 PRAMEF18Q5VWM3 479 aa22.95■■□□□ 1.26
CLN3-214ENST00000565140 WBP1LQ9NX94 342 aa22.95■■□□□ 1.26
CLN3-214ENST00000565140 MYH13Q9UKX3 1938 aa22.95■■□□□ 1.26
CLN3-214ENST00000565140 FOXN1O15353 648 aa22.94■■□□□ 1.26
CLN3-214ENST00000565140 BCAMP50895 628 aa22.94■■□□□ 1.26
CLN3-214ENST00000565140 PUM3Q15397 648 aaKnown RBP22.94■■□□□ 1.26
CLN3-214ENST00000565140 ZKSCAN2Q63HK3 967 aa22.94■■□□□ 1.26
CLN3-214ENST00000565140 VPS37DQ86XT2 251 aa22.94■■□□□ 1.26
CLN3-214ENST00000565140 C2orf69Q8N8R5 385 aa22.94■■□□□ 1.26
CLN3-214ENST00000565140 CIAO1O76071 339 aa22.93■■□□□ 1.26
CLN3-214ENST00000565140 DLGAP5Q15398 846 aa22.93■■□□□ 1.26
CLN3-214ENST00000565140 CAVIN4Q5BKX8 364 aa22.93■■□□□ 1.26
CLN3-214ENST00000565140 MFSD14BQ5SR56 506 aa22.93■■□□□ 1.26
CLN3-214ENST00000565140 TMEM57Q8N5G2 664 aa22.93■■□□□ 1.26
CLN3-214ENST00000565140 MTMR14Q8NCE2 650 aa22.93■■□□□ 1.26
CLN3-214ENST00000565140 CFAP100Q494V2 611 aa22.92■■□□□ 1.26
CLN3-214ENST00000565140 COPRSQ9NQ92 184 aa22.92■■□□□ 1.26
CLN3-214ENST00000565140 FBXO3Q9UK99 471 aa22.92■■□□□ 1.26
CLN3-214ENST00000565140 AOX1Q06278 1338 aa22.91■■□□□ 1.26
CLN3-214ENST00000565140 IFIT1P09914 478 aaKnown RBP22.91■■□□□ 1.26
CLN3-214ENST00000565140 GRIK5Q16478 980 aa22.91■■□□□ 1.26
CLN3-214ENST00000565140 PRMT6Q96LA8 375 aaPredicted RBP22.91■■□□□ 1.26
CLN3-214ENST00000565140 MAP2K2P36507 400 aa22.9■■□□□ 1.26
CLN3-214ENST00000565140 MAP2K1Q02750 393 aaPredicted RBP22.9■■□□□ 1.26
CLN3-214ENST00000565140 CHAF1AQ13111 956 aaPredicted RBP22.9■■□□□ 1.26
CLN3-214ENST00000565140 LPIN2Q92539 896 aa22.9■■□□□ 1.26
CLN3-214ENST00000565140 CEP126Q9P2H0 1117 aa22.9■■□□□ 1.26
CLN3-214ENST00000565140 SPDYE2BA6NHP3 402 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 SRGAP3O43295 1099 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 GNAI2P04899 355 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 SPDYE6P0CI01 402 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 SLC5A1P13866 664 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 IL15P40933 162 aaPredicted RBP22.89■■□□□ 1.25
CLN3-214ENST00000565140 MTX1Q13505 466 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 RGMBQ6NW40 437 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 AIDAQ96BJ3 306 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 ZIC5Q96T25 663 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 TTF2Q9UNY4 1162 aaKnown RBP22.89■■□□□ 1.25
CLN3-214ENST00000565140 PAPPA2Q9BXP8 1791 aa22.89■■□□□ 1.25
CLN3-214ENST00000565140 FAM155AB1AL88 458 aaPredicted RBP22.88■■□□□ 1.25
CLN3-214ENST00000565140 FRAT2O75474 233 aaPredicted RBP22.88■■□□□ 1.25
CLN3-214ENST00000565140 RLBP1P12271 317 aa22.88■■□□□ 1.25
CLN3-214ENST00000565140 MOB2Q70IA6 237 aa22.88■■□□□ 1.25
CLN3-214ENST00000565140 APOBEC3FQ8IUX4 373 aaKnown RBP22.88■■□□□ 1.25
CLN3-214ENST00000565140 RBM5P52756 815 aaKnown RBP eCLIP22.87■■□□□ 1.25
CLN3-214ENST00000565140 ATP2B3Q16720 1220 aa22.87■■□□□ 1.25
CLN3-214ENST00000565140 CLRN2A0PK11 232 aa22.86■■□□□ 1.25
CLN3-214ENST00000565140 ZNF157P51786 506 aaPredicted RBP22.86■■□□□ 1.25
CLN3-214ENST00000565140 DZIP1LQ8IYY4 767 aaKnown RBP22.86■■□□□ 1.25
CLN3-214ENST00000565140 PNMA6EA0A0J9YXQ4 647 aa22.85■■□□□ 1.25
CLN3-214ENST00000565140 CTCFP49711 727 aaPredicted RBP22.85■■□□□ 1.25
CLN3-214ENST00000565140 FKBP1BP68106 108 aa22.85■■□□□ 1.25
CLN3-214ENST00000565140 TBC1D22AQ8WUA7 517 aa22.85■■□□□ 1.25
CLN3-214ENST00000565140 DEFB129Q9H1M3 183 aa22.85■■□□□ 1.25
CLN3-214ENST00000565140 SERPINA10Q9UK55 444 aa22.85■■□□□ 1.25
CLN3-214ENST00000565140 UBE2Q2LH0YL09 131 aa22.84■■□□□ 1.25
CLN3-214ENST00000565140 NOGQ13253 232 aa22.84■■□□□ 1.25
CLN3-214ENST00000565140 IFFO2Q5TF58 517 aa22.84■■□□□ 1.25
CLN3-214ENST00000565140 FTSJ3Q8IY81 847 aaKnown RBP22.84■■□□□ 1.25
CLN3-214ENST00000565140 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.84■■□□□ 1.25
CLN3-214ENST00000565140 COL1A1P02452 1464 aaPredicted RBP22.84■■□□□ 1.25
CLN3-214ENST00000565140 MYO1BO43795 1136 aa22.83■■□□□ 1.25
CLN3-214ENST00000565140 HSPA8P11142 646 aaKnown RBP22.83■■□□□ 1.25
CLN3-214ENST00000565140 CRKP46108 304 aa22.83■■□□□ 1.25
CLN3-214ENST00000565140 LBX1P52954 281 aa22.83■■□□□ 1.25
CLN3-214ENST00000565140 TFCP2Q12800 502 aa22.83■■□□□ 1.25
CLN3-214ENST00000565140 CCDC102AQ96A19 550 aa22.83■■□□□ 1.25
CLN3-214ENST00000565140 VEZTQ9HBM0 779 aa22.83■■□□□ 1.25
CLN3-214ENST00000565140 ADORA1P30542 326 aa22.82■■□□□ 1.24
CLN3-214ENST00000565140 TIMM10P62072 90 aa22.82■■□□□ 1.24
CLN3-214ENST00000565140 ITPRIPQ8IWB1 547 aa22.82■■□□□ 1.24
CLN3-214ENST00000565140 TDRD3Q9H7E2 651 aaKnown RBP22.82■■□□□ 1.24
CLN3-214ENST00000565140 AKAP11Q9UKA4 1901 aa22.82■■□□□ 1.24
CLN3-214ENST00000565140 ZBTB7BO15156 539 aaPredicted RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms