RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ABHD8Q96I13 439 aa21.71■■□□□ 1.07
VPS9D1-203ENST00000563798 FAM205AQ6ZU69 1335 aa21.71■■□□□ 1.07
VPS9D1-203ENST00000563798 ANKRD44Q8N8A2 993 aa21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 TDRD7Q8NHU6 1098 aaKnown RBP21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 CSRNP1Q96S65 589 aa21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 PUS3Q9BZE2 481 aaKnown RBP21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 BICC1Q9H694 974 aaKnown RBP21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 SCAF8Q9UPN6 1271 aaKnown RBP21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 MROH5Q6ZUA9 1318 aa21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 COL1A1P02452 1464 aaPredicted RBP21.7■■□□□ 1.06
VPS9D1-203ENST00000563798 CT47B1P0C2W7 299 aaPredicted RBP21.69■■□□□ 1.06
VPS9D1-203ENST00000563798 DLGAP5Q15398 846 aa21.69■■□□□ 1.06
VPS9D1-203ENST00000563798 PRAMEF18Q5VWM3 479 aa21.69■■□□□ 1.06
VPS9D1-203ENST00000563798 USP44Q9H0E7 712 aa21.69■■□□□ 1.06
VPS9D1-203ENST00000563798 CCER2I3L3R5 266 aa21.68■■□□□ 1.06
VPS9D1-203ENST00000563798 PLIN1O60240 522 aa21.68■■□□□ 1.06
VPS9D1-203ENST00000563798 NF2P35240 595 aa21.68■■□□□ 1.06
VPS9D1-203ENST00000563798 CDCA7LQ96GN5 454 aa21.68■■□□□ 1.06
VPS9D1-203ENST00000563798 FAM84BQ96KN1 310 aaPredicted RBP21.68■■□□□ 1.06
VPS9D1-203ENST00000563798 RNF186Q9NXI6 227 aa21.68■■□□□ 1.06
VPS9D1-203ENST00000563798 UBE2Q2LH0YL09 131 aa21.67■■□□□ 1.06
VPS9D1-203ENST00000563798 HIBADHP31937 336 aaKnown RBP21.67■■□□□ 1.06
VPS9D1-203ENST00000563798 MOB2Q70IA6 237 aa21.67■■□□□ 1.06
VPS9D1-203ENST00000563798 SPDYE2BA6NHP3 402 aa21.66■■□□□ 1.06
VPS9D1-203ENST00000563798 SPDYE6P0CI01 402 aa21.66■■□□□ 1.06
VPS9D1-203ENST00000563798 PPP2R3BQ9Y5P8 575 aa21.66■■□□□ 1.06
VPS9D1-203ENST00000563798 LDLRAD1Q5T700 205 aa21.65■■□□□ 1.06
VPS9D1-203ENST00000563798 FBXO33Q7Z6M2 555 aa21.65■■□□□ 1.06
VPS9D1-203ENST00000563798 VGLL2Q8N8G2 317 aa21.65■■□□□ 1.06
VPS9D1-203ENST00000563798 DEFB129Q9H1M3 183 aa21.65■■□□□ 1.06
VPS9D1-203ENST00000563798 GYG1P46976 350 aa21.64■■□□□ 1.05
VPS9D1-203ENST00000563798 CFAP100Q494V2 611 aa21.64■■□□□ 1.05
VPS9D1-203ENST00000563798 ARMC9Q7Z3E5 817 aa21.64■■□□□ 1.05
VPS9D1-203ENST00000563798 PRMT6Q96LA8 375 aaPredicted RBP21.64■■□□□ 1.05
VPS9D1-203ENST00000563798 MYO1BO43795 1136 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 TRPA1O75762 1119 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 PDE8BO95263 885 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 TTLL12Q14166 644 aaPredicted RBP21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 MAP3K11Q16584 847 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 LRRC24Q50LG9 513 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 SMC4Q9NTJ3 1288 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 PCDHAC2Q9Y5I4 1007 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 ECM29Q5VYK3 1845 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 CASP8AP2Q9UKL3 1982 aa21.63■■□□□ 1.05
VPS9D1-203ENST00000563798 F8W031 263 aaPredicted RBP21.62■■□□□ 1.05
VPS9D1-203ENST00000563798 TM4SF4P48230 202 aa21.62■■□□□ 1.05
VPS9D1-203ENST00000563798 PTPN12Q05209 780 aaKnown RBP21.62■■□□□ 1.05
VPS9D1-203ENST00000563798 MFSD14BQ5SR56 506 aa21.62■■□□□ 1.05
VPS9D1-203ENST00000563798 MCOLN1Q9GZU1 580 aa21.62■■□□□ 1.05
VPS9D1-203ENST00000563798 SERPINA10Q9UK55 444 aa21.62■■□□□ 1.05
VPS9D1-203ENST00000563798 AKAP11Q9UKA4 1901 aa21.62■■□□□ 1.05
VPS9D1-203ENST00000563798 KIF16BQ96L93 1317 aa21.61■■□□□ 1.05
VPS9D1-203ENST00000563798 UNCXA6NJT0 531 aa21.61■■□□□ 1.05
VPS9D1-203ENST00000563798 RFX5P48382 616 aaPredicted RBP21.61■■□□□ 1.05
VPS9D1-203ENST00000563798 METTL24Q5JXM2 366 aa21.61■■□□□ 1.05
VPS9D1-203ENST00000563798 JAG2Q9Y219 1238 aa21.61■■□□□ 1.05
VPS9D1-203ENST00000563798 AOX1Q06278 1338 aa21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 SSC5DA1L4H1 1573 aa21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 FGFR2P21802 821 aa21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 DGKZQ13574 1117 aa21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 SUPT20HL1Q3ZLR7 823 aa21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 CAVIN4Q5BKX8 364 aa21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 ARAP2Q8WZ64 1704 aa21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 TTF2Q9UNY4 1162 aaKnown RBP21.59■■□□□ 1.05
VPS9D1-203ENST00000563798 CLRN2A0PK11 232 aa21.58■■□□□ 1.05
VPS9D1-203ENST00000563798 HDLBPQ00341 1268 aaKnown RBP21.58■■□□□ 1.05
VPS9D1-203ENST00000563798 SPDYE2Q495Y8 402 aa21.58■■□□□ 1.05
VPS9D1-203ENST00000563798 KLHDC4Q8TBB5 520 aa21.58■■□□□ 1.05
VPS9D1-203ENST00000563798 TBC1D22AQ8WUA7 517 aa21.58■■□□□ 1.05
VPS9D1-203ENST00000563798 FBXO3Q9UK99 471 aa21.58■■□□□ 1.05
VPS9D1-203ENST00000563798 ANGEL1Q9UNK9 670 aaKnown RBP21.58■■□□□ 1.05
VPS9D1-203ENST00000563798 EYA2O00167 538 aa21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 PPP1R12BO60237 982 aaPredicted RBP21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 RGS19P49795 217 aa21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 NOM1Q5C9Z4 860 aaKnown RBP21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 SPRYD7Q5W111 196 aa21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 VPS37DQ86XT2 251 aa21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 MRIQ9BWK5 157 aa21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 CFHR5Q9BXR6 569 aa21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 API5Q9BZZ5 524 aaKnown RBP21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 NOB1Q9ULX3 412 aaKnown RBP21.57■■□□□ 1.04
VPS9D1-203ENST00000563798 RBM5P52756 815 aaKnown RBP eCLIP21.56■■□□□ 1.04
VPS9D1-203ENST00000563798 TNFAIP1Q13829 316 aa21.56■■□□□ 1.04
VPS9D1-203ENST00000563798 PRKG1Q13976 671 aa21.56■■□□□ 1.04
VPS9D1-203ENST00000563798 RASA3Q14644 834 aa21.56■■□□□ 1.04
VPS9D1-203ENST00000563798 PUM3Q15397 648 aaKnown RBP21.56■■□□□ 1.04
VPS9D1-203ENST00000563798 DZIP1LQ8IYY4 767 aaKnown RBP21.56■■□□□ 1.04
VPS9D1-203ENST00000563798 ZNF70Q9UC06 446 aaPredicted RBP21.56■■□□□ 1.04
VPS9D1-203ENST00000563798 SREBF2Q12772 1141 aa21.55■■□□□ 1.04
VPS9D1-203ENST00000563798 NBPF12Q5TAG4 269 aaPredicted RBP21.55■■□□□ 1.04
VPS9D1-203ENST00000563798 ARHGAP45Q92619 1136 aa21.55■■□□□ 1.04
VPS9D1-203ENST00000563798 VEZTQ9HBM0 779 aa21.55■■□□□ 1.04
VPS9D1-203ENST00000563798 HDAC5Q9UQL6 1122 aa21.55■■□□□ 1.04
VPS9D1-203ENST00000563798 SUGT1Q9Y2Z0 365 aa21.55■■□□□ 1.04
VPS9D1-203ENST00000563798 CCDC85CA6NKD9 419 aa21.54■■□□□ 1.04
VPS9D1-203ENST00000563798 IFIT1P09914 478 aaKnown RBP21.54■■□□□ 1.04
VPS9D1-203ENST00000563798 UBTFL1P0CB47 393 aaPredicted RBP21.54■■□□□ 1.04
VPS9D1-203ENST00000563798 CRKP46108 304 aa21.54■■□□□ 1.04
VPS9D1-203ENST00000563798 BCAMP50895 628 aa21.54■■□□□ 1.04
VPS9D1-203ENST00000563798 RARSP54136 660 aaKnown RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms