RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 VGLL2Q8N8G2 317 aa19.57■□□□□ 0.72
VPS39-203ENST00000561797 CAPNS2Q96L46 248 aa19.57■□□□□ 0.72
VPS39-203ENST00000561797 SIL1Q9H173 461 aa19.57■□□□□ 0.72
VPS39-203ENST00000561797 GNAI3P08754 354 aa19.56■□□□□ 0.72
VPS39-203ENST00000561797 ZKSCAN2Q63HK3 967 aa19.56■□□□□ 0.72
VPS39-203ENST00000561797 SAPCD2Q86UD0 394 aa19.56■□□□□ 0.72
VPS39-203ENST00000561797 TDRD7Q8NHU6 1098 aaKnown RBP19.56■□□□□ 0.72
VPS39-203ENST00000561797 IQSEC3Q9UPP2 1182 aaPredicted RBP19.56■□□□□ 0.72
VPS39-203ENST00000561797 WNT10BO00744 389 aa19.55■□□□□ 0.72
VPS39-203ENST00000561797 VPS37DQ86XT2 251 aa19.55■□□□□ 0.72
VPS39-203ENST00000561797 CDCA5Q96FF9 252 aa19.55■□□□□ 0.72
VPS39-203ENST00000561797 ECE1P42892 770 aa19.54■□□□□ 0.72
VPS39-203ENST00000561797 MMP14P50281 582 aa19.54■□□□□ 0.72
VPS39-203ENST00000561797 CAVIN4Q5BKX8 364 aa19.54■□□□□ 0.72
VPS39-203ENST00000561797 ATG9AQ7Z3C6 839 aa19.54■□□□□ 0.72
VPS39-203ENST00000561797 GBA2Q9HCG7 927 aaPredicted RBP19.54■□□□□ 0.72
VPS39-203ENST00000561797 PA2G4Q9UQ80 394 aaKnown RBP19.54■□□□□ 0.72
VPS39-203ENST00000561797 FAM205AQ6ZU69 1335 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 PITPNM2Q9BZ72 1349 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 HUNKP57058 714 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 FKBP1AP62942 108 aaKnown RBP19.53■□□□□ 0.72
VPS39-203ENST00000561797 PUM3Q15397 648 aaKnown RBP19.53■□□□□ 0.72
VPS39-203ENST00000561797 DLGAP5Q15398 846 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 FBXO33Q7Z6M2 555 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 TMEM57Q8N5G2 664 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 C2orf69Q8N8R5 385 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 THSD7BQ9C0I4 1608 aa19.53■□□□□ 0.72
VPS39-203ENST00000561797 FRAT2O75474 233 aaPredicted RBP19.52■□□□□ 0.72
VPS39-203ENST00000561797 IFIT1P09914 478 aaKnown RBP19.52■□□□□ 0.72
VPS39-203ENST00000561797 BCAMP50895 628 aa19.52■□□□□ 0.72
VPS39-203ENST00000561797 CHAF1AQ13111 956 aaPredicted RBP19.52■□□□□ 0.72
VPS39-203ENST00000561797 MFSD14BQ5SR56 506 aa19.52■□□□□ 0.72
VPS39-203ENST00000561797 PRAMEF18Q5VWM3 479 aa19.52■□□□□ 0.72
VPS39-203ENST00000561797 PCDHAC2Q9Y5I4 1007 aa19.52■□□□□ 0.72
VPS39-203ENST00000561797 AOC2O75106 756 aa19.51■□□□□ 0.71
VPS39-203ENST00000561797 CIAO1O76071 339 aa19.51■□□□□ 0.71
VPS39-203ENST00000561797 SLC5A1P13866 664 aa19.51■□□□□ 0.71
VPS39-203ENST00000561797 FGFR2P21802 821 aa19.51■□□□□ 0.71
VPS39-203ENST00000561797 CEP126Q9P2H0 1117 aa19.51■□□□□ 0.71
VPS39-203ENST00000561797 SRGAP3O43295 1099 aa19.5■□□□□ 0.71
VPS39-203ENST00000561797 RBM5P52756 815 aaKnown RBP eCLIP19.5■□□□□ 0.71
VPS39-203ENST00000561797 CFAP100Q494V2 611 aa19.5■□□□□ 0.71
VPS39-203ENST00000561797 AIDAQ96BJ3 306 aa19.5■□□□□ 0.71
VPS39-203ENST00000561797 ZBED3Q96IU2 234 aaPredicted RBP19.5■□□□□ 0.71
VPS39-203ENST00000561797 HHIPL1Q96JK4 782 aa19.5■□□□□ 0.71
VPS39-203ENST00000561797 FBXO3Q9UK99 471 aa19.5■□□□□ 0.71
VPS39-203ENST00000561797 FOXN1O15353 648 aa19.49■□□□□ 0.71
VPS39-203ENST00000561797 GNAI2P04899 355 aa19.49■□□□□ 0.71
VPS39-203ENST00000561797 FTSJ3Q8IY81 847 aaKnown RBP19.49■□□□□ 0.71
VPS39-203ENST00000561797 LPIN2Q92539 896 aa19.49■□□□□ 0.71
VPS39-203ENST00000561797 COPRSQ9NQ92 184 aa19.49■□□□□ 0.71
VPS39-203ENST00000561797 WBP1LQ9NX94 342 aa19.49■□□□□ 0.71
VPS39-203ENST00000561797 TTF2Q9UNY4 1162 aaKnown RBP19.49■□□□□ 0.71
VPS39-203ENST00000561797 PAPPA2Q9BXP8 1791 aa19.49■□□□□ 0.71
VPS39-203ENST00000561797 IL15P40933 162 aaPredicted RBP19.48■□□□□ 0.71
VPS39-203ENST00000561797 ATP2B3Q16720 1220 aa19.48■□□□□ 0.71
VPS39-203ENST00000561797 DZIP1LQ8IYY4 767 aaKnown RBP19.48■□□□□ 0.71
VPS39-203ENST00000561797 MTMR14Q8NCE2 650 aa19.48■□□□□ 0.71
VPS39-203ENST00000561797 PRMT6Q96LA8 375 aaPredicted RBP19.48■□□□□ 0.71
VPS39-203ENST00000561797 MAP2K1Q02750 393 aaPredicted RBP19.47■□□□□ 0.71
VPS39-203ENST00000561797 COL13A1Q5TAT6 717 aaPredicted RBP19.47■□□□□ 0.71
VPS39-203ENST00000561797 RGMBQ6NW40 437 aa19.47■□□□□ 0.71
VPS39-203ENST00000561797 APOBEC3FQ8IUX4 373 aaKnown RBP19.47■□□□□ 0.71
VPS39-203ENST00000561797 AKAP11Q9UKA4 1901 aa19.47■□□□□ 0.71
VPS39-203ENST00000561797 CLRN2A0PK11 232 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 SPDYE2BA6NHP3 402 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 MYO1BO43795 1136 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 SPDYE6P0CI01 402 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 RLBP1P12271 317 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 MTX1Q13505 466 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 GRIK5Q16478 980 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 ITPRIPQ8IWB1 547 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 AOX1Q06278 1338 aa19.46■□□□□ 0.71
VPS39-203ENST00000561797 MAP2K2P36507 400 aa19.45■□□□□ 0.7
VPS39-203ENST00000561797 ZNF157P51786 506 aaPredicted RBP19.45■□□□□ 0.7
VPS39-203ENST00000561797 TTLL12Q14166 644 aaPredicted RBP19.45■□□□□ 0.7
VPS39-203ENST00000561797 MOB2Q70IA6 237 aa19.45■□□□□ 0.7
VPS39-203ENST00000561797 TBC1D22AQ8WUA7 517 aa19.45■□□□□ 0.7
VPS39-203ENST00000561797 VEZTQ9HBM0 779 aa19.45■□□□□ 0.7
VPS39-203ENST00000561797 PCNTO95613 3336 aa19.44■□□□□ 0.7
VPS39-203ENST00000561797 PNMA6EA0A0J9YXQ4 647 aa19.44■□□□□ 0.7
VPS39-203ENST00000561797 NF2P35240 595 aa19.44■□□□□ 0.7
VPS39-203ENST00000561797 BEGAINQ9BUH8 593 aa19.44■□□□□ 0.7
VPS39-203ENST00000561797 UBE2Q2LH0YL09 131 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 CRKP46108 304 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 CTCFP49711 727 aaPredicted RBP19.43■□□□□ 0.7
VPS39-203ENST00000561797 TFCP2Q12800 502 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 PRKG1Q13976 671 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 ZIC5Q96T25 663 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 DEFB129Q9H1M3 183 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 C1orf115Q9H7X2 142 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 SERPINA10Q9UK55 444 aa19.43■□□□□ 0.7
VPS39-203ENST00000561797 FAM155AB1AL88 458 aaPredicted RBP19.42■□□□□ 0.7
VPS39-203ENST00000561797 ADORA1P30542 326 aa19.42■□□□□ 0.7
VPS39-203ENST00000561797 TIMM10P62072 90 aa19.42■□□□□ 0.7
VPS39-203ENST00000561797 FKBP1BP68106 108 aa19.42■□□□□ 0.7
VPS39-203ENST00000561797 NOGQ13253 232 aa19.42■□□□□ 0.7
VPS39-203ENST00000561797 PANK1Q8TE04 598 aa19.42■□□□□ 0.7
VPS39-203ENST00000561797 CCDC102AQ96A19 550 aa19.42■□□□□ 0.7
VPS39-203ENST00000561797 TDRD3Q9H7E2 651 aaKnown RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms