RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ANKRD18BA2A2Z9 1011 aa24.1■■□□□ 1.45
VPS35-202ENST00000561713 NOM1Q5C9Z4 860 aaKnown RBP24.1■■□□□ 1.45
VPS35-202ENST00000561713 LDLRAD1Q5T700 205 aa24.1■■□□□ 1.45
VPS35-202ENST00000561713 SLC4A10Q6U841 1118 aa24.1■■□□□ 1.45
VPS35-202ENST00000561713 HELBQ8NG08 1087 aaPredicted RBP24.1■■□□□ 1.45
VPS35-202ENST00000561713 ANGEL1Q9UNK9 670 aaKnown RBP24.1■■□□□ 1.45
VPS35-202ENST00000561713 TAF5LO75529 589 aa24.09■■□□□ 1.45
VPS35-202ENST00000561713 KCNJ4P48050 445 aa24.09■■□□□ 1.45
VPS35-202ENST00000561713 PRPF38BQ5VTL8 546 aaKnown RBP24.09■■□□□ 1.45
VPS35-202ENST00000561713 SPRYD7Q5W111 196 aa24.09■■□□□ 1.45
VPS35-202ENST00000561713 GRM8O00222 908 aa24.08■■□□□ 1.45
VPS35-202ENST00000561713 FKTNO75072 461 aa24.08■■□□□ 1.45
VPS35-202ENST00000561713 FBXO46Q6PJ61 603 aaPredicted RBP24.08■■□□□ 1.45
VPS35-202ENST00000561713 ZNF594Q96JF6 807 aaPredicted RBP24.08■■□□□ 1.45
VPS35-202ENST00000561713 CFHR5Q9BXR6 569 aa24.08■■□□□ 1.45
VPS35-202ENST00000561713 CD209Q9NNX6 404 aa24.08■■□□□ 1.45
VPS35-202ENST00000561713 CENPFP49454 3210 aa24.07■■□□□ 1.44
VPS35-202ENST00000561713 LMBR1LQ6UX01 489 aa24.07■■□□□ 1.44
VPS35-202ENST00000561713 CERS5Q8N5B7 392 aa24.07■■□□□ 1.44
VPS35-202ENST00000561713 DEFB129Q9H1M3 183 aa24.07■■□□□ 1.44
VPS35-202ENST00000561713 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.07■■□□□ 1.44
VPS35-202ENST00000561713 ARAP2Q8WZ64 1704 aa24.07■■□□□ 1.44
VPS35-202ENST00000561713 IFIT5Q13325 482 aaKnown RBP24.06■■□□□ 1.44
VPS35-202ENST00000561713 DLGAP5Q15398 846 aa24.06■■□□□ 1.44
VPS35-202ENST00000561713 PCDHAC2Q9Y5I4 1007 aa24.06■■□□□ 1.44
VPS35-202ENST00000561713 MKI67P46013 3256 aaKnown RBP24.06■■□□□ 1.44
VPS35-202ENST00000561713 IRS2Q9Y4H2 1338 aa24.06■■□□□ 1.44
VPS35-202ENST00000561713 SLC10A4Q96EP9 437 aa24.04■■□□□ 1.44
VPS35-202ENST00000561713 CLMNQ96JQ2 1002 aa24.04■■□□□ 1.44
VPS35-202ENST00000561713 C9orf78Q9NZ63 289 aaPredicted RBP24.04■■□□□ 1.44
VPS35-202ENST00000561713 COL1A1P02452 1464 aaPredicted RBP24.03■■□□□ 1.44
VPS35-202ENST00000561713 F8W031 263 aaPredicted RBP24.03■■□□□ 1.44
VPS35-202ENST00000561713 TAF7LQ5H9L4 462 aa24.03■■□□□ 1.44
VPS35-202ENST00000561713 SUCLG2Q96I99 432 aa24.03■■□□□ 1.44
VPS35-202ENST00000561713 SRCIN1Q9C0H9 1055 aa24.03■■□□□ 1.44
VPS35-202ENST00000561713 JAG2Q9Y219 1238 aa24.03■■□□□ 1.44
VPS35-202ENST00000561713 SSC5DA1L4H1 1573 aa24.03■■□□□ 1.44
VPS35-202ENST00000561713 PLIN1O60240 522 aa24.02■■□□□ 1.44
VPS35-202ENST00000561713 ALDH1A1P00352 501 aa24.02■■□□□ 1.44
VPS35-202ENST00000561713 MAP3K11Q16584 847 aa24.02■■□□□ 1.44
VPS35-202ENST00000561713 IFNL1Q8IU54 200 aa24.02■■□□□ 1.44
VPS35-202ENST00000561713 MTMR14Q8NCE2 650 aa24.02■■□□□ 1.44
VPS35-202ENST00000561713 CLRN2A0PK11 232 aa24.01■■□□□ 1.43
VPS35-202ENST00000561713 MANSC4A6NHS7 340 aaPredicted RBP24.01■■□□□ 1.43
VPS35-202ENST00000561713 ALDH1L1O75891 902 aa24.01■■□□□ 1.43
VPS35-202ENST00000561713 C15orf52Q6ZUT6 534 aaKnown RBP24.01■■□□□ 1.43
VPS35-202ENST00000561713 MRPL50Q8N5N7 158 aaKnown RBP24.01■■□□□ 1.43
VPS35-202ENST00000561713 INHBEP58166 350 aa24■■□□□ 1.43
VPS35-202ENST00000561713 CCDC57Q2TAC2 916 aa24■■□□□ 1.43
VPS35-202ENST00000561713 CFAP100Q494V2 611 aa24■■□□□ 1.43
VPS35-202ENST00000561713 KAZALD1Q96I82 304 aa24■■□□□ 1.43
VPS35-202ENST00000561713 WNK4Q96J92 1243 aa24■■□□□ 1.43
VPS35-202ENST00000561713 PRMT6Q96LA8 375 aaPredicted RBP24■■□□□ 1.43
VPS35-202ENST00000561713 AOX1Q06278 1338 aa24■■□□□ 1.43
VPS35-202ENST00000561713 BRCA2P51587 3418 aa24■■□□□ 1.43
VPS35-202ENST00000561713 SPDYE2BA6NHP3 402 aa23.99■■□□□ 1.43
VPS35-202ENST00000561713 IGF2BP3O00425 579 aaKnown RBP eCLIP23.99■■□□□ 1.43
VPS35-202ENST00000561713 PPP1R12BO60237 982 aaPredicted RBP23.99■■□□□ 1.43
VPS35-202ENST00000561713 NBPF7P0C2Y1 421 aaPredicted RBP23.99■■□□□ 1.43
VPS35-202ENST00000561713 SPDYE6P0CI01 402 aa23.99■■□□□ 1.43
VPS35-202ENST00000561713 ZBTB48P10074 688 aaPredicted RBP23.99■■□□□ 1.43
VPS35-202ENST00000561713 IL1R1P14778 569 aa23.99■■□□□ 1.43
VPS35-202ENST00000561713 CNNM1Q9NRU3 951 aa23.99■■□□□ 1.43
VPS35-202ENST00000561713 PPP2R3BQ9Y5P8 575 aa23.99■■□□□ 1.43
VPS35-202ENST00000561713 NBPF12Q5TAG4 269 aaPredicted RBP23.98■■□□□ 1.43
VPS35-202ENST00000561713 LDHAL6AQ6ZMR3 332 aa23.98■■□□□ 1.43
VPS35-202ENST00000561713 ZNF804AQ7Z570 1209 aa23.98■■□□□ 1.43
VPS35-202ENST00000561713 SSH1Q8WYL5 1049 aa23.98■■□□□ 1.43
VPS35-202ENST00000561713 CDCA7LQ96GN5 454 aa23.98■■□□□ 1.43
VPS35-202ENST00000561713 VEZTQ9HBM0 779 aa23.98■■□□□ 1.43
VPS35-202ENST00000561713 TRIM17Q9Y577 477 aa23.98■■□□□ 1.43
VPS35-202ENST00000561713 MYH13Q9UKX3 1938 aa23.98■■□□□ 1.43
VPS35-202ENST00000561713 E9PSI1 815 aa23.97■■□□□ 1.43
VPS35-202ENST00000561713 MYO1BO43795 1136 aa23.97■■□□□ 1.43
VPS35-202ENST00000561713 SUPT20HL1Q3ZLR7 823 aa23.97■■□□□ 1.43
VPS35-202ENST00000561713 PUS3Q9BZE2 481 aaKnown RBP23.97■■□□□ 1.43
VPS35-202ENST00000561713 OTOP1Q7RTM1 612 aa23.96■■□□□ 1.43
VPS35-202ENST00000561713 BICC1Q9H694 974 aaKnown RBP23.96■■□□□ 1.43
VPS35-202ENST00000561713 GJA5P36382 358 aa23.95■■□□□ 1.42
VPS35-202ENST00000561713 FKBP1AP62942 108 aaKnown RBP23.95■■□□□ 1.42
VPS35-202ENST00000561713 USP2O75604 605 aaPredicted RBP23.94■■□□□ 1.42
VPS35-202ENST00000561713 RBM5P52756 815 aaKnown RBP eCLIP23.94■■□□□ 1.42
VPS35-202ENST00000561713 SLFN5Q08AF3 891 aa23.94■■□□□ 1.42
VPS35-202ENST00000561713 RASA3Q14644 834 aa23.94■■□□□ 1.42
VPS35-202ENST00000561713 OTOFQ9HC10 1997 aa23.94■■□□□ 1.42
VPS35-202ENST00000561713 UTYO14607 1347 aa23.93■■□□□ 1.42
VPS35-202ENST00000561713 UNCXA6NJT0 531 aa23.93■■□□□ 1.42
VPS35-202ENST00000561713 IREB2P48200 963 aaKnown RBP23.93■■□□□ 1.42
VPS35-202ENST00000561713 ANKRD44Q8N8A2 993 aa23.93■■□□□ 1.42
VPS35-202ENST00000561713 POTEFA5A3E0 1075 aa23.92■■□□□ 1.42
VPS35-202ENST00000561713 CRHR2Q13324 411 aa23.92■■□□□ 1.42
VPS35-202ENST00000561713 PTPN18Q99952 460 aa23.92■■□□□ 1.42
VPS35-202ENST00000561713 LAMB1P07942 1786 aa23.92■■□□□ 1.42
VPS35-202ENST00000561713 PTPRCP08575 1304 aa23.91■■□□□ 1.42
VPS35-202ENST00000561713 GYG1P46976 350 aa23.91■■□□□ 1.42
VPS35-202ENST00000561713 CD99L2Q8TCZ2 262 aa23.91■■□□□ 1.42
VPS35-202ENST00000561713 ANKRD13AQ8IZ07 590 aa23.9■■□□□ 1.42
VPS35-202ENST00000561713 KLHDC4Q8TBB5 520 aa23.9■■□□□ 1.42
VPS35-202ENST00000561713 ERO1AQ96HE7 468 aa23.9■■□□□ 1.42
VPS35-202ENST00000561713 SMC4Q9NTJ3 1288 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms