RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TTLL12Q14166 644 aaPredicted RBP17.68■□□□□ 0.42
LDLR-213ENST00000560502 NOM1Q5C9Z4 860 aaKnown RBP17.68■□□□□ 0.42
LDLR-213ENST00000560502 CERS5Q8N5B7 392 aa17.68■□□□□ 0.42
LDLR-213ENST00000560502 CD209Q9NNX6 404 aa17.68■□□□□ 0.42
LDLR-213ENST00000560502 HDAC9Q9UKV0 1011 aa17.68■□□□□ 0.42
LDLR-213ENST00000560502 SSC5DA1L4H1 1573 aa17.67■□□□□ 0.42
LDLR-213ENST00000560502 SOX10P56693 466 aa17.67■□□□□ 0.42
LDLR-213ENST00000560502 PTPN12Q05209 780 aaKnown RBP17.67■□□□□ 0.42
LDLR-213ENST00000560502 LDLRAD1Q5T700 205 aa17.67■□□□□ 0.42
LDLR-213ENST00000560502 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.67■□□□□ 0.42
LDLR-213ENST00000560502 ZNF296Q8WUU4 475 aaPredicted RBP17.67■□□□□ 0.42
LDLR-213ENST00000560502 CFHR5Q9BXR6 569 aa17.67■□□□□ 0.42
LDLR-213ENST00000560502 SNAP23O00161 211 aa17.66■□□□□ 0.42
LDLR-213ENST00000560502 TBC1D8O95759 1140 aa17.66■□□□□ 0.42
LDLR-213ENST00000560502 KCNJ4P48050 445 aa17.66■□□□□ 0.42
LDLR-213ENST00000560502 MTMR14Q8NCE2 650 aa17.66■□□□□ 0.42
LDLR-213ENST00000560502 ARAP2Q8WZ64 1704 aa17.66■□□□□ 0.42
LDLR-213ENST00000560502 TAF5LO75529 589 aa17.65■□□□□ 0.42
LDLR-213ENST00000560502 IL1R1P14778 569 aa17.65■□□□□ 0.42
LDLR-213ENST00000560502 EXOSC9Q06265 439 aaKnown RBP17.65■□□□□ 0.42
LDLR-213ENST00000560502 BEND3Q5T5X7 828 aa17.65■□□□□ 0.42
LDLR-213ENST00000560502 ARMC9Q7Z3E5 817 aa17.65■□□□□ 0.42
LDLR-213ENST00000560502 HPS5Q9UPZ3 1129 aa17.65■□□□□ 0.42
LDLR-213ENST00000560502 F6X3S4 739 aa17.64■□□□□ 0.41
LDLR-213ENST00000560502 FKBP1AP62942 108 aaKnown RBP17.64■□□□□ 0.41
LDLR-213ENST00000560502 SREBF2Q12772 1141 aa17.64■□□□□ 0.41
LDLR-213ENST00000560502 MKRN3Q13064 507 aaKnown RBP17.64■□□□□ 0.41
LDLR-213ENST00000560502 IFIT5Q13325 482 aaKnown RBP17.64■□□□□ 0.41
LDLR-213ENST00000560502 PKN2Q16513 984 aaKnown RBP17.64■□□□□ 0.41
LDLR-213ENST00000560502 SPRYD7Q5W111 196 aa17.64■□□□□ 0.41
LDLR-213ENST00000560502 HELBQ8NG08 1087 aaPredicted RBP17.64■□□□□ 0.41
LDLR-213ENST00000560502 OTOFQ9HC10 1997 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 GPR25O00155 361 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 PRKG1Q13976 671 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 DLGAP5Q15398 846 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 MAP3K11Q16584 847 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 EPHA10Q5JZY3 1008 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 DEFB129Q9H1M3 183 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 ANGEL1Q9UNK9 670 aaKnown RBP17.63■□□□□ 0.41
LDLR-213ENST00000560502 PCDHAC2Q9Y5I4 1007 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 PPP2R3BQ9Y5P8 575 aa17.63■□□□□ 0.41
LDLR-213ENST00000560502 ZNF804AQ7Z570 1209 aa17.62■□□□□ 0.41
LDLR-213ENST00000560502 FZD1Q9UP38 647 aa17.62■□□□□ 0.41
LDLR-213ENST00000560502 SPDYE2BA6NHP3 402 aa17.61■□□□□ 0.41
LDLR-213ENST00000560502 SPDYE6P0CI01 402 aa17.61■□□□□ 0.41
LDLR-213ENST00000560502 LMBR1LQ6UX01 489 aa17.61■□□□□ 0.41
LDLR-213ENST00000560502 R3HDMLQ9H3Y0 253 aa17.61■□□□□ 0.41
LDLR-213ENST00000560502 AOX1Q06278 1338 aa17.61■□□□□ 0.41
LDLR-213ENST00000560502 GRM8O00222 908 aa17.6■□□□□ 0.41
LDLR-213ENST00000560502 CFAP100Q494V2 611 aa17.6■□□□□ 0.41
LDLR-213ENST00000560502 CHMP3Q9Y3E7 222 aa17.6■□□□□ 0.41
LDLR-213ENST00000560502 FAM205AQ6ZU69 1335 aa17.59■□□□□ 0.41
LDLR-213ENST00000560502 FKTNO75072 461 aa17.59■□□□□ 0.41
LDLR-213ENST00000560502 ZBTB48P10074 688 aaPredicted RBP17.59■□□□□ 0.41
LDLR-213ENST00000560502 FBXO46Q6PJ61 603 aaPredicted RBP17.59■□□□□ 0.41
LDLR-213ENST00000560502 ZNF594Q96JF6 807 aaPredicted RBP17.59■□□□□ 0.41
LDLR-213ENST00000560502 PRMT6Q96LA8 375 aaPredicted RBP17.59■□□□□ 0.41
LDLR-213ENST00000560502 CLRN2A0PK11 232 aa17.58■□□□□ 0.4
LDLR-213ENST00000560502 MANSC4A6NHS7 340 aaPredicted RBP17.58■□□□□ 0.4
LDLR-213ENST00000560502 UNCXA6NJT0 531 aa17.58■□□□□ 0.4
LDLR-213ENST00000560502 F8W031 263 aaPredicted RBP17.58■□□□□ 0.4
LDLR-213ENST00000560502 ALDH1A1P00352 501 aa17.58■□□□□ 0.4
LDLR-213ENST00000560502 CCDC57Q2TAC2 916 aa17.58■□□□□ 0.4
LDLR-213ENST00000560502 WNK4Q96J92 1243 aa17.58■□□□□ 0.4
LDLR-213ENST00000560502 CLMNQ96JQ2 1002 aa17.58■□□□□ 0.4
LDLR-213ENST00000560502 MYO1BO43795 1136 aa17.57■□□□□ 0.4
LDLR-213ENST00000560502 PPP1R12BO60237 982 aaPredicted RBP17.57■□□□□ 0.4
LDLR-213ENST00000560502 ALDH1L1O75891 902 aa17.57■□□□□ 0.4
LDLR-213ENST00000560502 LDHAL6AQ6ZMR3 332 aa17.57■□□□□ 0.4
LDLR-213ENST00000560502 IFNL1Q8IU54 200 aa17.57■□□□□ 0.4
LDLR-213ENST00000560502 JAG2Q9Y219 1238 aa17.57■□□□□ 0.4
LDLR-213ENST00000560502 RARSP54136 660 aaKnown RBP17.56■□□□□ 0.4
LDLR-213ENST00000560502 INHBEP58166 350 aa17.56■□□□□ 0.4
LDLR-213ENST00000560502 SUPT20HL1Q3ZLR7 823 aa17.56■□□□□ 0.4
LDLR-213ENST00000560502 NBPF12Q5TAG4 269 aaPredicted RBP17.56■□□□□ 0.4
LDLR-213ENST00000560502 TDRD7Q8NHU6 1098 aaKnown RBP17.56■□□□□ 0.4
LDLR-213ENST00000560502 SLC10A4Q96EP9 437 aa17.56■□□□□ 0.4
LDLR-213ENST00000560502 KAZALD1Q96I82 304 aa17.56■□□□□ 0.4
LDLR-213ENST00000560502 CNNM1Q9NRU3 951 aa17.56■□□□□ 0.4
LDLR-213ENST00000560502 PPP4R2Q9NY27 417 aa17.56■□□□□ 0.4
LDLR-213ENST00000560502 RBBP6Q7Z6E9 1792 aaKnown RBP17.56■□□□□ 0.4
LDLR-213ENST00000560502 IGF2BP3O00425 579 aaKnown RBP eCLIP17.55■□□□□ 0.4
LDLR-213ENST00000560502 UBE4AQ14139 1066 aa17.55■□□□□ 0.4
LDLR-213ENST00000560502 ALDH1L2Q3SY69 923 aa17.55■□□□□ 0.4
LDLR-213ENST00000560502 TAF7LQ5H9L4 462 aa17.55■□□□□ 0.4
LDLR-213ENST00000560502 VEZTQ9HBM0 779 aa17.55■□□□□ 0.4
LDLR-213ENST00000560502 PLIN1O60240 522 aa17.54■□□□□ 0.4
LDLR-213ENST00000560502 USP2O75604 605 aaPredicted RBP17.54■□□□□ 0.4
LDLR-213ENST00000560502 GJA5P36382 358 aa17.54■□□□□ 0.4
LDLR-213ENST00000560502 PDE3AQ14432 1141 aa17.54■□□□□ 0.4
LDLR-213ENST00000560502 RASA3Q14644 834 aa17.54■□□□□ 0.4
LDLR-213ENST00000560502 SPDYE2Q495Y8 402 aa17.54■□□□□ 0.4
LDLR-213ENST00000560502 PRPF38BQ5VTL8 546 aaKnown RBP17.54■□□□□ 0.4
LDLR-213ENST00000560502 SUCLG2Q96I99 432 aa17.54■□□□□ 0.4
LDLR-213ENST00000560502 SRCIN1Q9C0H9 1055 aa17.54■□□□□ 0.4
LDLR-213ENST00000560502 C9orf78Q9NZ63 289 aaPredicted RBP17.54■□□□□ 0.4
LDLR-213ENST00000560502 UTYO14607 1347 aa17.53■□□□□ 0.4
LDLR-213ENST00000560502 MS4A1P11836 297 aa17.53■□□□□ 0.4
LDLR-213ENST00000560502 GYG1P46976 350 aa17.53■□□□□ 0.4
LDLR-213ENST00000560502 MFSD14BQ5SR56 506 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms