RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CHAF1AQ13111 956 aaPredicted RBP26.74■■□□□ 1.87
SNX1-210ENST00000560260 RASGRF1Q13972 1273 aa26.74■■□□□ 1.87
SNX1-210ENST00000560260 GORABQ5T7V8 394 aa26.74■■□□□ 1.87
SNX1-210ENST00000560260 RSBN1LQ6PCB5 846 aaPredicted RBP26.74■■□□□ 1.87
SNX1-210ENST00000560260 L3MBTL3Q96JM7 780 aaPredicted RBP26.74■■□□□ 1.87
SNX1-210ENST00000560260 AKAP11Q9UKA4 1901 aa26.74■■□□□ 1.87
SNX1-210ENST00000560260 POTECB2RU33 542 aa26.73■■□□□ 1.87
SNX1-210ENST00000560260 ZBTB22O15209 634 aa26.73■■□□□ 1.87
SNX1-210ENST00000560260 ANKRD45Q5TZF3 282 aa26.73■■□□□ 1.87
SNX1-210ENST00000560260 PI16Q6UXB8 463 aa26.73■■□□□ 1.87
SNX1-210ENST00000560260 GMLQ99445 158 aa26.73■■□□□ 1.87
SNX1-210ENST00000560260 KDM2BQ8NHM5 1336 aa26.72■■□□□ 1.87
SNX1-210ENST00000560260 SHTN1A0MZ66 631 aa26.72■■□□□ 1.87
SNX1-210ENST00000560260 IFIT2P09913 472 aaKnown RBP26.72■■□□□ 1.87
SNX1-210ENST00000560260 B4GALNT3Q6L9W6 998 aa26.72■■□□□ 1.87
SNX1-210ENST00000560260 C16orf71Q8IYS4 520 aaPredicted RBP26.72■■□□□ 1.87
SNX1-210ENST00000560260 OTUD7AQ8TE49 926 aaPredicted RBP26.72■■□□□ 1.87
SNX1-210ENST00000560260 NMRK2Q9NPI5 230 aa26.72■■□□□ 1.87
SNX1-210ENST00000560260 GNL3LQ9NVN8 582 aaKnown RBP26.72■■□□□ 1.87
SNX1-210ENST00000560260 FRAT2O75474 233 aaPredicted RBP26.71■■□□□ 1.87
SNX1-210ENST00000560260 MCAMP43121 646 aa26.71■■□□□ 1.87
SNX1-210ENST00000560260 TTC39AQ5SRH9 613 aa26.71■■□□□ 1.87
SNX1-210ENST00000560260 SEMA3EO15041 775 aa26.7■■□□□ 1.87
SNX1-210ENST00000560260 GRIK5Q16478 980 aa26.7■■□□□ 1.87
SNX1-210ENST00000560260 HMG20BQ9P0W2 317 aa26.7■■□□□ 1.87
SNX1-210ENST00000560260 SALL3Q9BXA9 1300 aa26.7■■□□□ 1.86
SNX1-210ENST00000560260 UQCRFS1P1P0C7P4 283 aa26.69■■□□□ 1.86
SNX1-210ENST00000560260 CCDC158Q5M9N0 1113 aa26.69■■□□□ 1.86
SNX1-210ENST00000560260 ZNF784Q8NCA9 323 aaPredicted RBP26.69■■□□□ 1.86
SNX1-210ENST00000560260 ZNF512BQ96KM6 892 aaPredicted RBP26.69■■□□□ 1.86
SNX1-210ENST00000560260 DENND2AQ9ULE3 1009 aa26.69■■□□□ 1.86
SNX1-210ENST00000560260 SCN4AP35499 1836 aa26.69■■□□□ 1.86
SNX1-210ENST00000560260 PDS5AQ29RF7 1337 aaKnown RBP26.69■■□□□ 1.86
SNX1-210ENST00000560260 FKBP1AP62942 108 aaKnown RBP26.68■■□□□ 1.86
SNX1-210ENST00000560260 NUCB1Q02818 461 aa26.68■■□□□ 1.86
SNX1-210ENST00000560260 AGBL3Q8NEM8 1001 aa26.68■■□□□ 1.86
SNX1-210ENST00000560260 LNPKQ9C0E8 428 aa26.68■■□□□ 1.86
SNX1-210ENST00000560260 GPRC5DQ9NZD1 345 aa26.68■■□□□ 1.86
SNX1-210ENST00000560260 RPS12P25398 132 aaKnown RBP26.67■■□□□ 1.86
SNX1-210ENST00000560260 EPS15P42566 896 aa26.67■■□□□ 1.86
SNX1-210ENST00000560260 MFSD14BQ5SR56 506 aa26.67■■□□□ 1.86
SNX1-210ENST00000560260 DPF2Q92785 391 aa26.67■■□□□ 1.86
SNX1-210ENST00000560260 RRAGCQ9HB90 399 aa26.67■■□□□ 1.86
SNX1-210ENST00000560260 SNRKQ9NRH2 765 aa26.67■■□□□ 1.86
SNX1-210ENST00000560260 ADAMTSL1Q8N6G6 1762 aa26.67■■□□□ 1.86
SNX1-210ENST00000560260 TSHZ3Q63HK5 1081 aa26.66■■□□□ 1.86
SNX1-210ENST00000560260 SPATA5Q8NB90 893 aa26.66■■□□□ 1.86
SNX1-210ENST00000560260 MYO3BQ8WXR4 1341 aa26.66■■□□□ 1.86
SNX1-210ENST00000560260 CHD1LQ86WJ1 897 aa26.65■■□□□ 1.86
SNX1-210ENST00000560260 KIAA0825Q8IV33 1275 aa26.65■■□□□ 1.86
SNX1-210ENST00000560260 MICALL2Q8IY33 904 aa26.65■■□□□ 1.86
SNX1-210ENST00000560260 NDUFB9Q9Y6M9 179 aa26.65■■□□□ 1.86
SNX1-210ENST00000560260 SALL1Q9NSC2 1324 aa26.65■■□□□ 1.86
SNX1-210ENST00000560260 ERICH6BQ5W0A0 696 aa26.65■■□□□ 1.86
SNX1-210ENST00000560260 GPBP1L1Q9HC44 474 aaPredicted RBP26.65■■□□□ 1.86
SNX1-210ENST00000560260 CNOT7Q9UIV1 285 aaKnown RBP26.65■■□□□ 1.86
SNX1-210ENST00000560260 ZAP70P43403 619 aa26.64■■□□□ 1.85
SNX1-210ENST00000560260 WDR66Q8TBY9 1149 aa26.64■■□□□ 1.85
SNX1-210ENST00000560260 TBC1D22AQ8WUA7 517 aa26.64■■□□□ 1.85
SNX1-210ENST00000560260 HACL1Q9UJ83 578 aa26.64■■□□□ 1.85
SNX1-210ENST00000560260 F8W031 263 aaPredicted RBP26.63■■□□□ 1.85
SNX1-210ENST00000560260 EGFRP00533 1210 aa26.63■■□□□ 1.85
SNX1-210ENST00000560260 ZNF280AP59817 542 aaPredicted RBP26.63■■□□□ 1.85
SNX1-210ENST00000560260 TAF1DQ9H5J8 278 aaPredicted RBP26.63■■□□□ 1.85
SNX1-210ENST00000560260 MYO5AQ9Y4I1 1855 aaKnown RBP26.62■■□□□ 1.85
SNX1-210ENST00000560260 USP17L8P0C7I0 530 aa26.62■■□□□ 1.85
SNX1-210ENST00000560260 ATP5JP18859 108 aa26.62■■□□□ 1.85
SNX1-210ENST00000560260 LMOD1P29536 600 aaPredicted RBP26.62■■□□□ 1.85
SNX1-210ENST00000560260 PRDX5P30044 214 aa26.62■■□□□ 1.85
SNX1-210ENST00000560260 TBC1D9Q6ZT07 1266 aa26.62■■□□□ 1.85
SNX1-210ENST00000560260 TRPM4Q8TD43 1214 aa26.62■■□□□ 1.85
SNX1-210ENST00000560260 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.62■■□□□ 1.85
SNX1-210ENST00000560260 CCDC136Q96JN2 1154 aa26.62■■□□□ 1.85
SNX1-210ENST00000560260 ECHDC1Q9NTX5 307 aa26.62■■□□□ 1.85
SNX1-210ENST00000560260 IQCA1LA6NCM1 817 aa26.61■■□□□ 1.85
SNX1-210ENST00000560260 KIF3CO14782 793 aa26.61■■□□□ 1.85
SNX1-210ENST00000560260 CYP2E1P05181 493 aaPredicted RBP26.61■■□□□ 1.85
SNX1-210ENST00000560260 VEGFAP15692 232 aaPredicted RBP26.61■■□□□ 1.85
SNX1-210ENST00000560260 MX1P20591 662 aa26.61■■□□□ 1.85
SNX1-210ENST00000560260 PDE4AP27815 886 aa26.61■■□□□ 1.85
SNX1-210ENST00000560260 EPHX2P34913 555 aa26.61■■□□□ 1.85
SNX1-210ENST00000560260 ZBTB47Q9UFB7 747 aaPredicted RBP26.61■■□□□ 1.85
SNX1-210ENST00000560260 CENPQQ7L2Z9 268 aaPredicted RBP26.6■■□□□ 1.85
SNX1-210ENST00000560260 SAMD7Q7Z3H4 446 aa26.6■■□□□ 1.85
SNX1-210ENST00000560260 PI4K2BQ8TCG2 481 aa26.6■■□□□ 1.85
SNX1-210ENST00000560260 BOLA2Q9H3K6 86 aa26.6■■□□□ 1.85
SNX1-210ENST00000560260 ANTXR1Q9H6X2 564 aa26.6■■□□□ 1.85
SNX1-210ENST00000560260 PIH1D3Q9NQM4 214 aaKnown RBP26.6■■□□□ 1.85
SNX1-210ENST00000560260 DOCK2Q92608 1830 aa26.59■■□□□ 1.85
SNX1-210ENST00000560260 MAST2Q6P0Q8 1798 aa26.59■■□□□ 1.85
SNX1-210ENST00000560260 EDC3Q96F86 508 aaKnown RBP26.59■■□□□ 1.85
SNX1-210ENST00000560260 ADARB2Q9NS39 739 aaKnown RBP26.59■■□□□ 1.85
SNX1-210ENST00000560260 PPP4R2Q9NY27 417 aa26.59■■□□□ 1.85
SNX1-210ENST00000560260 TTF2Q9UNY4 1162 aaKnown RBP26.59■■□□□ 1.85
SNX1-210ENST00000560260 PCDHAC2Q9Y5I4 1007 aa26.59■■□□□ 1.85
SNX1-210ENST00000560260 POTEIP0CG38 1075 aa26.58■■□□□ 1.85
SNX1-210ENST00000560260 POTEJP0CG39 1038 aa26.58■■□□□ 1.85
SNX1-210ENST00000560260 HIRAP54198 1017 aaPredicted RBP26.58■■□□□ 1.85
SNX1-210ENST00000560260 TBC1D10BQ4KMP7 808 aaPredicted RBP26.58■■□□□ 1.85
SNX1-210ENST00000560260 DNAJC2Q99543 621 aaKnown RBP26.58■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms