RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 QTRT2Q9H974 415 aaKnown RBP18.98■□□□□ 0.63
SHMT2-232ENST00000557487 PAG1Q9NWQ8 432 aa18.98■□□□□ 0.63
SHMT2-232ENST00000557487 ZHX1Q9UKY1 873 aaPredicted RBP18.98■□□□□ 0.63
SHMT2-232ENST00000557487 CCP110O43303 1012 aa18.97■□□□□ 0.63
SHMT2-232ENST00000557487 SLU7O95391 586 aaKnown RBP18.97■□□□□ 0.63
SHMT2-232ENST00000557487 PDIA3P30101 505 aaKnown RBP18.97■□□□□ 0.63
SHMT2-232ENST00000557487 CEBPZQ03701 1054 aaKnown RBP18.97■□□□□ 0.63
SHMT2-232ENST00000557487 DDX46Q7L014 1031 aaKnown RBP18.97■□□□□ 0.63
SHMT2-232ENST00000557487 CREBRFQ8IUR6 639 aa18.97■□□□□ 0.63
SHMT2-232ENST00000557487 SEC62Q99442 399 aaKnown RBP18.97■□□□□ 0.63
SHMT2-232ENST00000557487 TRPC5Q9UL62 973 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-232ENST00000557487 COL14A1Q05707 1796 aaKnown RBP18.97■□□□□ 0.63
SHMT2-232ENST00000557487 CARMIL3Q8ND23 1372 aa18.97■□□□□ 0.63
SHMT2-232ENST00000557487 KDM6AO15550 1401 aaPredicted RBP18.96■□□□□ 0.63
SHMT2-232ENST00000557487 ATRNO75882 1429 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 E7EWF7 191 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 UBE3BQ7Z3V4 1068 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 BRAPQ7Z569 592 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 KRT222Q8N1A0 295 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 PLBD2Q8NHP8 589 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 ZNF592Q92610 1267 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 SDF4Q9BRK5 362 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 PRDM11Q9NQV5 511 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 POLR3EQ9NVU0 708 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 USP16Q9Y5T5 823 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 AFDNP55196 1824 aaKnown RBP18.96■□□□□ 0.63
SHMT2-232ENST00000557487 ERBB3P21860 1342 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 CASP7P55210 303 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 FILIP1Q7Z7B0 1213 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 AOPEPQ8N6M6 819 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 KIAA1468Q9P260 1216 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.96■□□□□ 0.63
SHMT2-232ENST00000557487 NWD2Q9ULI1 1742 aa18.96■□□□□ 0.63
SHMT2-232ENST00000557487 A0A087WZG4 1122 aa18.95■□□□□ 0.62
SHMT2-232ENST00000557487 IL15P40933 162 aaPredicted RBP18.95■□□□□ 0.62
SHMT2-232ENST00000557487 ZC3H6P61129 1189 aaKnown RBP18.95■□□□□ 0.62
SHMT2-232ENST00000557487 TTC5Q8N0Z6 440 aa18.95■□□□□ 0.62
SHMT2-232ENST00000557487 LRRC2Q9BYS8 371 aa18.95■□□□□ 0.62
SHMT2-232ENST00000557487 PCDHA7Q9UN72 937 aa18.95■□□□□ 0.62
SHMT2-232ENST00000557487 RNF113AO15541 343 aaKnown RBP18.94■□□□□ 0.62
SHMT2-232ENST00000557487 HSPD1P10809 573 aaKnown RBP18.94■□□□□ 0.62
SHMT2-232ENST00000557487 PHKG2P15735 406 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 TATP17735 454 aaPredicted RBP18.94■□□□□ 0.62
SHMT2-232ENST00000557487 LINC00301Q8NCQ3 95 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 FMNL2Q96PY5 1086 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 L2HGDHQ9H9P8 463 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 ZNF215Q9UL58 517 aaPredicted RBP18.94■□□□□ 0.62
SHMT2-232ENST00000557487 ARFGEF2Q9Y6D5 1785 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 PLCH1Q4KWH8 1693 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 RXRBP28702 533 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 IFNL2Q8IZJ0 200 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 ZNF496Q96IT1 587 aaPredicted RBP18.94■□□□□ 0.62
SHMT2-232ENST00000557487 ATG3Q9NT62 314 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 FAM53CQ9NYF3 392 aa18.94■□□□□ 0.62
SHMT2-232ENST00000557487 USP27XA6NNY8 438 aa18.93■□□□□ 0.62
SHMT2-232ENST00000557487 MYO1BO43795 1136 aa18.93■□□□□ 0.62
SHMT2-232ENST00000557487 SLC39A6Q13433 755 aa18.93■□□□□ 0.62
SHMT2-232ENST00000557487 STK38Q15208 465 aa18.93■□□□□ 0.62
SHMT2-232ENST00000557487 SF3A1Q15459 793 aaKnown RBP18.93■□□□□ 0.62
SHMT2-232ENST00000557487 WDR19Q8NEZ3 1342 aa18.93■□□□□ 0.62
SHMT2-232ENST00000557487 H7C1W4 665 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 GOLIM4O00461 696 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 CCT2P78371 535 aaKnown RBP18.92■□□□□ 0.62
SHMT2-232ENST00000557487 ARID5BQ14865 1188 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 NBPF11Q86T75 865 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 DCAF5Q96JK2 942 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 FTOQ9C0B1 505 aaKnown RBP eCLIP18.92■□□□□ 0.62
SHMT2-232ENST00000557487 BTG4Q9NY30 223 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 IKBKBO14920 756 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 CIAO1O76071 339 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 ZFYP08048 801 aaPredicted RBP18.92■□□□□ 0.62
SHMT2-232ENST00000557487 SFPQP23246 707 aaKnown RBP eCLIP18.92■□□□□ 0.62
SHMT2-232ENST00000557487 NLRP12P59046 1061 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 VPS72Q15906 364 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 TIGD1Q96MW7 591 aa18.92■□□□□ 0.62
SHMT2-232ENST00000557487 LMBR1LQ6UX01 489 aa18.91■□□□□ 0.62
SHMT2-232ENST00000557487 NFATC2IPQ8NCF5 419 aa18.91■□□□□ 0.62
SHMT2-232ENST00000557487 C8orf76Q96K31 380 aa18.91■□□□□ 0.62
SHMT2-232ENST00000557487 AXIN2Q9Y2T1 843 aa18.91■□□□□ 0.62
SHMT2-232ENST00000557487 LAMB4A4D0S4 1761 aa18.91■□□□□ 0.62
SHMT2-232ENST00000557487 MAST3O60307 1309 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 SPTLC2O15270 562 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 SLC3A2P08195 630 aaKnown RBP18.9■□□□□ 0.62
SHMT2-232ENST00000557487 FOXO4P98177 505 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 CHRNA2Q15822 529 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 KMT5BQ4FZB7 885 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 ATG9AQ7Z3C6 839 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 NRAPQ86VF7 1730 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 FDPSP14324 419 aaKnown RBP18.9■□□□□ 0.62
SHMT2-232ENST00000557487 CMA1P23946 247 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 NDUFA8P51970 172 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 FBXO18Q8NFZ0 1043 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 GJD4Q96KN9 370 aaPredicted RBP18.9■□□□□ 0.62
SHMT2-232ENST00000557487 NDUFB9Q9Y6M9 179 aa18.9■□□□□ 0.62
SHMT2-232ENST00000557487 ABCC12Q96J65 1359 aa18.89■□□□□ 0.61
SHMT2-232ENST00000557487 CBFA2T2O43439 604 aa18.89■□□□□ 0.61
SHMT2-232ENST00000557487 IFIT1P09914 478 aaKnown RBP18.89■□□□□ 0.61
SHMT2-232ENST00000557487 IMMTQ16891 758 aaKnown RBP18.89■□□□□ 0.61
SHMT2-232ENST00000557487 ZNF771Q7L3S4 317 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-232ENST00000557487 NEUROD6Q96NK8 337 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms