RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ZNF521Q96K83 1311 aa13.99□□□□□ -0.17
CCDC88C-213ENST00000557455 F8W031 263 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-213ENST00000557455 PRKG1Q13976 671 aa13.99□□□□□ -0.17
CCDC88C-213ENST00000557455 ARMC9Q7Z3E5 817 aa13.99□□□□□ -0.17
CCDC88C-213ENST00000557455 CERS5Q8N5B7 392 aa13.99□□□□□ -0.17
CCDC88C-213ENST00000557455 FKBP1AP62942 108 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-213ENST00000557455 MTMR14Q8NCE2 650 aa13.98□□□□□ -0.17
CCDC88C-213ENST00000557455 SUCLG2Q96I99 432 aa13.98□□□□□ -0.17
CCDC88C-213ENST00000557455 COL1A1P02452 1464 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-213ENST00000557455 MYO1BO43795 1136 aa13.97□□□□□ -0.17
CCDC88C-213ENST00000557455 NBPF7P0C2Y1 421 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-213ENST00000557455 UBE4AQ14139 1066 aa13.97□□□□□ -0.17
CCDC88C-213ENST00000557455 MRPL50Q8N5N7 158 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-213ENST00000557455 DEFB129Q9H1M3 183 aa13.97□□□□□ -0.17
CCDC88C-213ENST00000557455 JAG2Q9Y219 1238 aa13.97□□□□□ -0.17
CCDC88C-213ENST00000557455 UTYO14607 1347 aa13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 ARAP2Q8WZ64 1704 aa13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 RGS19P49795 217 aa13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 RBM5P52756 815 aaKnown RBP eCLIP13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 PTPN12Q05209 780 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 MKRN3Q13064 507 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 CFAP100Q494V2 611 aa13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 KAZALD1Q96I82 304 aa13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 PUS3Q9BZE2 481 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 ANGEL1Q9UNK9 670 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 PCDHAC2Q9Y5I4 1007 aa13.96□□□□□ -0.17
CCDC88C-213ENST00000557455 PTPRCP08575 1304 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 CLRN2A0PK11 232 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 SPDYE2BA6NHP3 402 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 E9PSI1 815 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 SPDYE6P0CI01 402 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 HIBADHP31937 336 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 TM4SF4P48230 202 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 MLLT1Q03111 559 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 PRMT6Q96LA8 375 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 BICC1Q9H694 974 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 VEZTQ9HBM0 779 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 PPP2R3BQ9Y5P8 575 aa13.95□□□□□ -0.18
CCDC88C-213ENST00000557455 FAM205AQ6ZU69 1335 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 MROH5Q6ZUA9 1318 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 GYG1P46976 350 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 SREBF2Q12772 1141 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 RABL6Q3YEC7 729 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 MFSD14BQ5SR56 506 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 LDLRAD1Q5T700 205 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 CTU1Q7Z7A3 348 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 TDRD7Q8NHU6 1098 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 FAM84BQ96KN1 310 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 FZD1Q9UP38 647 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 RIPOR2Q9Y4F9 1068 aa13.94□□□□□ -0.18
CCDC88C-213ENST00000557455 PPP1R12BO60237 982 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-213ENST00000557455 TBC1D8O95759 1140 aa13.93□□□□□ -0.18
CCDC88C-213ENST00000557455 SUPT20HL1Q3ZLR7 823 aa13.93□□□□□ -0.18
CCDC88C-213ENST00000557455 SSH1Q8WYL5 1049 aa13.93□□□□□ -0.18
CCDC88C-213ENST00000557455 SLC10A4Q96EP9 437 aa13.93□□□□□ -0.18
CCDC88C-213ENST00000557455 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-213ENST00000557455 TTF2Q9UNY4 1162 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-213ENST00000557455 SLFN5Q08AF3 891 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 MAP3K11Q16584 847 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 LRRC24Q50LG9 513 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 METTL24Q5JXM2 366 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 SPRYD7Q5W111 196 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 VPS37DQ86XT2 251 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 ANKRD44Q8N8A2 993 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 SERPINA10Q9UK55 444 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 SSC5DA1L4H1 1573 aa13.92□□□□□ -0.18
CCDC88C-213ENST00000557455 LAMB1P07942 1786 aa13.91□□□□□ -0.18
CCDC88C-213ENST00000557455 TNFAIP1Q13829 316 aa13.91□□□□□ -0.18
CCDC88C-213ENST00000557455 RASA3Q14644 834 aa13.91□□□□□ -0.18
CCDC88C-213ENST00000557455 CAVIN4Q5BKX8 364 aa13.91□□□□□ -0.18
CCDC88C-213ENST00000557455 NBPF12Q5TAG4 269 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-213ENST00000557455 ZNF296Q8WUU4 475 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-213ENST00000557455 MYH13Q9UKX3 1938 aa13.91□□□□□ -0.18
CCDC88C-213ENST00000557455 AOX1Q06278 1338 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 MANSC4A6NHS7 340 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 UNCXA6NJT0 531 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 GPR25O00155 361 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 FRAT2O75474 233 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 PDE8BO95263 885 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 IREB2P48200 963 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 ALDH1L2Q3SY69 923 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 SPDYE2Q495Y8 402 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 FBXO33Q7Z6M2 555 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 KLHDC4Q8TBB5 520 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 USP44Q9H0E7 712 aa13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 TDRD3Q9H7E2 651 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 ZNF70Q9UC06 446 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 IQSEC3Q9UPP2 1182 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-213ENST00000557455 OTOFQ9HC10 1997 aa13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 ALDH1A1P00352 501 aa13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 ZBTB48P10074 688 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 INHBEP58166 350 aa13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 CHAF1AQ13111 956 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 PKN2Q16513 984 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 NOM1Q5C9Z4 860 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 DZIP1LQ8IYY4 767 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 VGLL2Q8N8G2 317 aa13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 TBC1D22AQ8WUA7 517 aa13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 WNK4Q96J92 1243 aa13.89□□□□□ -0.19
CCDC88C-213ENST00000557455 CLMNQ96JQ2 1002 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms