RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 PSME4Q14997 1843 aa13.12□□□□□ -0.31
TDP1-211ENST00000555178 DICER1Q9UPY3 1922 aaKnown RBP13.11□□□□□ -0.31
TDP1-211ENST00000555178 ERC2O15083 957 aa13.11□□□□□ -0.31
TDP1-211ENST00000555178 TDRD7Q8NHU6 1098 aaKnown RBP13.11□□□□□ -0.31
TDP1-211ENST00000555178 TSHZ2Q9NRE2 1034 aa13.11□□□□□ -0.31
TDP1-211ENST00000555178 CHAF1AQ13111 956 aaPredicted RBP13.11□□□□□ -0.31
TDP1-211ENST00000555178 ARHGAP27Q6ZUM4 889 aa13.11□□□□□ -0.31
TDP1-211ENST00000555178 RTKN2Q8IZC4 609 aa13.11□□□□□ -0.31
TDP1-211ENST00000555178 SPATA5Q8NB90 893 aa13.11□□□□□ -0.31
TDP1-211ENST00000555178 PSMD1Q99460 953 aa13.11□□□□□ -0.31
TDP1-211ENST00000555178 ZC3H12CQ9C0D7 883 aaKnown RBP13.11□□□□□ -0.31
TDP1-211ENST00000555178 IL25Q9H293 177 aa13.11□□□□□ -0.31
TDP1-211ENST00000555178 PPIP5K2O43314 1243 aa13.1□□□□□ -0.31
TDP1-211ENST00000555178 KIAA2012Q0VF49 1180 aa13.1□□□□□ -0.31
TDP1-211ENST00000555178 CAVIN4Q5BKX8 364 aa13.1□□□□□ -0.31
TDP1-211ENST00000555178 CC2D2BQ6DHV5 1058 aa13.1□□□□□ -0.31
TDP1-211ENST00000555178 VPS37DQ86XT2 251 aa13.1□□□□□ -0.31
TDP1-211ENST00000555178 TMX4Q9H1E5 349 aaPredicted RBP13.1□□□□□ -0.31
TDP1-211ENST00000555178 IL1R1P14778 569 aa13.09□□□□□ -0.31
TDP1-211ENST00000555178 ZNF384Q8TF68 577 aa13.09□□□□□ -0.31
TDP1-211ENST00000555178 ECE2O60344 883 aa13.09□□□□□ -0.31
TDP1-211ENST00000555178 ZNF512BQ96KM6 892 aaPredicted RBP13.09□□□□□ -0.31
TDP1-211ENST00000555178 TAOK3Q9H2K8 898 aa13.09□□□□□ -0.31
TDP1-211ENST00000555178 PAG1Q9NWQ8 432 aa13.09□□□□□ -0.31
TDP1-211ENST00000555178 CDC45O75419 566 aa13.08□□□□□ -0.32
TDP1-211ENST00000555178 IARSP41252 1262 aaKnown RBP13.08□□□□□ -0.32
TDP1-211ENST00000555178 GTF2IP78347 998 aa13.08□□□□□ -0.32
TDP1-211ENST00000555178 ZNF804AQ7Z570 1209 aa13.08□□□□□ -0.32
TDP1-211ENST00000555178 CERS5Q8N5B7 392 aa13.08□□□□□ -0.32
TDP1-211ENST00000555178 MYH2Q9UKX2 1941 aa13.08□□□□□ -0.32
TDP1-211ENST00000555178 CNTROBQ8N137 903 aa13.08□□□□□ -0.32
TDP1-211ENST00000555178 LARGE2Q8N3Y3 721 aa13.08□□□□□ -0.32
TDP1-211ENST00000555178 FRAT2O75474 233 aaPredicted RBP13.07□□□□□ -0.32
TDP1-211ENST00000555178 UQCRFS1P1P0C7P4 283 aa13.07□□□□□ -0.32
TDP1-211ENST00000555178 PRDX5P30044 214 aa13.07□□□□□ -0.32
TDP1-211ENST00000555178 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.07□□□□□ -0.32
TDP1-211ENST00000555178 SEC62Q99442 399 aaKnown RBP13.07□□□□□ -0.32
TDP1-211ENST00000555178 EYA3Q99504 573 aa13.07□□□□□ -0.32
TDP1-211ENST00000555178 COA1Q9GZY4 146 aa13.07□□□□□ -0.32
TDP1-211ENST00000555178 RAD17O75943 681 aa13.07□□□□□ -0.32
TDP1-211ENST00000555178 FBXW7Q969H0 707 aa13.07□□□□□ -0.32
TDP1-211ENST00000555178 TIAM2Q8IVF5 1701 aa13.06□□□□□ -0.32
TDP1-211ENST00000555178 GPR162Q16538 588 aa13.06□□□□□ -0.32
TDP1-211ENST00000555178 SOGA3Q5TF21 947 aa13.06□□□□□ -0.32
TDP1-211ENST00000555178 FAM227BQ96M60 508 aa13.06□□□□□ -0.32
TDP1-211ENST00000555178 FSD1Q9BTV5 496 aa13.06□□□□□ -0.32
TDP1-211ENST00000555178 ABCF2Q9UG63 623 aa13.06□□□□□ -0.32
TDP1-211ENST00000555178 CHMLP26374 656 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 MFAP1P55081 439 aaKnown RBP13.05□□□□□ -0.32
TDP1-211ENST00000555178 ADGRA1Q86SQ6 560 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 EVI5LQ96CN4 794 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 KBTBD3Q8NAB2 608 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 SUPT20HQ8NEM7 779 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 GNL3LQ9NVN8 582 aaKnown RBP13.05□□□□□ -0.32
TDP1-211ENST00000555178 DENND2AQ9ULE3 1009 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 PCDHAC2Q9Y5I4 1007 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 LTBP3Q9NS15 1303 aa13.05□□□□□ -0.32
TDP1-211ENST00000555178 SHTN1A0MZ66 631 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 G3V3G9 751 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 IDH1O75874 414 aaKnown RBP13.04□□□□□ -0.32
TDP1-211ENST00000555178 DCAF8Q5TAQ9 597 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 TTLL5Q6EMB2 1281 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 ZBTB12Q9Y330 459 aaPredicted RBP13.04□□□□□ -0.32
TDP1-211ENST00000555178 CDK5RAP2Q96SN8 1893 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 A0A0D9SFI3 127 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 F8W031 263 aaPredicted RBP13.04□□□□□ -0.32
TDP1-211ENST00000555178 DACT2Q5SW24 774 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 CWC27Q6UX04 472 aaKnown RBP13.04□□□□□ -0.32
TDP1-211ENST00000555178 CCDC129Q6ZRS4 1044 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 FAM205AQ6ZU69 1335 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 ZNF541Q9H0D2 1346 aa13.04□□□□□ -0.32
TDP1-211ENST00000555178 PSMD14O00487 310 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 CXCL9Q07325 125 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 NMIQ13287 307 aaPredicted RBP13.03□□□□□ -0.32
TDP1-211ENST00000555178 DIXDC1Q155Q3 683 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 MFSD14BQ5SR56 506 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 PODNQ7Z5L7 613 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 MAST2Q6P0Q8 1798 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 TCRBV5S4A2TA0A5A2 114 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 SEMA3EO15041 775 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 GRIPAP1Q4V328 841 aa13.03□□□□□ -0.32
TDP1-211ENST00000555178 PDE6AP16499 860 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 MECOMQ03112 1051 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 ZNF589Q86UQ0 364 aaPredicted RBP13.02□□□□□ -0.33
TDP1-211ENST00000555178 NIM1KQ8IY84 436 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 MAGEB6Q8N7X4 407 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 OSBP2Q969R2 916 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 ESYT1Q9BSJ8 1104 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 LRP2BPQ9P2M1 347 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 ZNRF3Q9ULT6 936 aa13.02□□□□□ -0.33
TDP1-211ENST00000555178 M0R2C6 588 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 SCNN1DP51172 638 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 SLC9C2Q5TAH2 1124 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 PUS7LQ9H0K6 701 aaKnown RBP13.01□□□□□ -0.33
TDP1-211ENST00000555178 DIAPH3Q9NSV4 1193 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 RAI14Q9P0K7 980 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 RNF181Q9P0P0 153 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 ZNF532Q9HCE3 1301 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 USP17L3A6NCW0 530 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 USP17L4A6NCW7 530 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms