RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 FBXW7Q969H0 707 aa20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 CAPNS2Q96L46 248 aa20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 MEIS3Q99687 375 aa20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 COL1A1P02452 1464 aaPredicted RBP20.05■□□□□ 0.8
CCDC88C-209ENST00000554872 ZBTB22O15209 634 aa20.05■□□□□ 0.8
CCDC88C-209ENST00000554872 PUM3Q15397 648 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-209ENST00000554872 KIAA0825Q8IV33 1275 aa20.05■□□□□ 0.8
CCDC88C-209ENST00000554872 LRRFIP2Q9Y608 721 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-209ENST00000554872 NBPF9Q3BBW0 867 aa20.04■□□□□ 0.8
CCDC88C-209ENST00000554872 ATG9AQ7Z3C6 839 aa20.04■□□□□ 0.8
CCDC88C-209ENST00000554872 KLHDC4Q8TBB5 520 aa20.04■□□□□ 0.8
CCDC88C-209ENST00000554872 COPRSQ9NQ92 184 aa20.04■□□□□ 0.8
CCDC88C-209ENST00000554872 WBP1LQ9NX94 342 aa20.04■□□□□ 0.8
CCDC88C-209ENST00000554872 PAPPA2Q9BXP8 1791 aa20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 MAP2K2P36507 400 aa20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 GYG1P46976 350 aa20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 FKBP1BP68106 108 aa20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 MAP2K1Q02750 393 aaPredicted RBP20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 CAVIN4Q5BKX8 364 aa20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 ZKSCAN2Q63HK3 967 aa20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 CDCA5Q96FF9 252 aa20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 GBA2Q9HCG7 927 aaPredicted RBP20.03■□□□□ 0.8
CCDC88C-209ENST00000554872 ECM29Q5VYK3 1845 aa20.02■□□□□ 0.8
CCDC88C-209ENST00000554872 APOBEC3FQ8IUX4 373 aaKnown RBP20.02■□□□□ 0.8
CCDC88C-209ENST00000554872 C2orf69Q8N8R5 385 aa20.02■□□□□ 0.8
CCDC88C-209ENST00000554872 LPIN2Q92539 896 aa20.02■□□□□ 0.8
CCDC88C-209ENST00000554872 ZNF408Q9H9D4 720 aa20.02■□□□□ 0.8
CCDC88C-209ENST00000554872 IFIT1P09914 478 aaKnown RBP20.01■□□□□ 0.79
CCDC88C-209ENST00000554872 CYP4F22Q6NT55 531 aa20.01■□□□□ 0.79
CCDC88C-209ENST00000554872 FRAT1Q92837 279 aaPredicted RBP20.01■□□□□ 0.79
CCDC88C-209ENST00000554872 IL15P40933 162 aaPredicted RBP20■□□□□ 0.79
CCDC88C-209ENST00000554872 HUNKP57058 714 aa20■□□□□ 0.79
CCDC88C-209ENST00000554872 MFSD14BQ5SR56 506 aa20■□□□□ 0.79
CCDC88C-209ENST00000554872 DLK2Q6UY11 383 aa20■□□□□ 0.79
CCDC88C-209ENST00000554872 TBC1D22AQ8WUA7 517 aa20■□□□□ 0.79
CCDC88C-209ENST00000554872 SPDYE2BA6NHP3 402 aa19.99■□□□□ 0.79
CCDC88C-209ENST00000554872 SPDYE6P0CI01 402 aa19.99■□□□□ 0.79
CCDC88C-209ENST00000554872 DLGAP5Q15398 846 aa19.99■□□□□ 0.79
CCDC88C-209ENST00000554872 VPS37DQ86XT2 251 aa19.99■□□□□ 0.79
CCDC88C-209ENST00000554872 SERPINA10Q9UK55 444 aa19.99■□□□□ 0.79
CCDC88C-209ENST00000554872 SUGT1Q9Y2Z0 365 aa19.99■□□□□ 0.79
CCDC88C-209ENST00000554872 GNAI2P04899 355 aa19.98■□□□□ 0.79
CCDC88C-209ENST00000554872 SLC5A1P13866 664 aa19.98■□□□□ 0.79
CCDC88C-209ENST00000554872 HDLBPQ00341 1268 aaKnown RBP19.98■□□□□ 0.79
CCDC88C-209ENST00000554872 NOGQ13253 232 aa19.98■□□□□ 0.79
CCDC88C-209ENST00000554872 AIDAQ96BJ3 306 aa19.98■□□□□ 0.79
CCDC88C-209ENST00000554872 TNNQ9UQP3 1299 aa19.98■□□□□ 0.79
CCDC88C-209ENST00000554872 PPP2R3BQ9Y5P8 575 aa19.98■□□□□ 0.79
CCDC88C-209ENST00000554872 RGMBQ6NW40 437 aa19.97■□□□□ 0.79
CCDC88C-209ENST00000554872 CEP126Q9P2H0 1117 aa19.97■□□□□ 0.79
CCDC88C-209ENST00000554872 FOXN1O15353 648 aa19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 SRGAP3O43295 1099 aa19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 CTCFP49711 727 aaPredicted RBP19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 CFAP100Q494V2 611 aa19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 PAXIP1Q6ZW49 1069 aaPredicted RBP19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 TMEM57Q8N5G2 664 aa19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 CCDC102AQ96A19 550 aa19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 MRIQ9BWK5 157 aa19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 PRDM10Q9NQV6 1147 aa19.96■□□□□ 0.79
CCDC88C-209ENST00000554872 FAM155AB1AL88 458 aaPredicted RBP19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 CA12O43570 354 aa19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 MYO1BO43795 1136 aa19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 BCAMP50895 628 aa19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 ATP2B3Q16720 1220 aa19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 CLUAP1Q96AJ1 413 aa19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 SIL1Q9H173 461 aa19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 TTF2Q9UNY4 1162 aaKnown RBP19.95■□□□□ 0.78
CCDC88C-209ENST00000554872 SEMA3EO15041 775 aa19.94■□□□□ 0.78
CCDC88C-209ENST00000554872 DZIP1LQ8IYY4 767 aaKnown RBP19.94■□□□□ 0.78
CCDC88C-209ENST00000554872 PRMT6Q96LA8 375 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-209ENST00000554872 PA2G4Q9UQ80 394 aaKnown RBP19.94■□□□□ 0.78
CCDC88C-209ENST00000554872 JAG2Q9Y219 1238 aa19.94■□□□□ 0.78
CCDC88C-209ENST00000554872 F8W031 263 aaPredicted RBP19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 SLC10A3P09131 477 aa19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 NF2P35240 595 aa19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 COL13A1Q5TAT6 717 aaPredicted RBP19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 FTSJ3Q8IY81 847 aaKnown RBP19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 DEFB129Q9H1M3 183 aa19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 MYH13Q9UKX3 1938 aa19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 MAST3O60307 1309 aa19.93■□□□□ 0.78
CCDC88C-209ENST00000554872 AOC2O75106 756 aa19.92■□□□□ 0.78
CCDC88C-209ENST00000554872 FRAT2O75474 233 aaPredicted RBP19.92■□□□□ 0.78
CCDC88C-209ENST00000554872 SPDYE2Q495Y8 402 aa19.92■□□□□ 0.78
CCDC88C-209ENST00000554872 IFFO2Q5TF58 517 aa19.92■□□□□ 0.78
CCDC88C-209ENST00000554872 WDR66Q8TBY9 1149 aa19.92■□□□□ 0.78
CCDC88C-209ENST00000554872 PDS5AQ29RF7 1337 aaKnown RBP19.92■□□□□ 0.78
CCDC88C-209ENST00000554872 TNFAIP1Q13829 316 aa19.91■□□□□ 0.78
CCDC88C-209ENST00000554872 POLA2Q14181 598 aa19.91■□□□□ 0.78
CCDC88C-209ENST00000554872 GNL3LQ9NVN8 582 aaKnown RBP19.91■□□□□ 0.78
CCDC88C-209ENST00000554872 IQSEC3Q9UPP2 1182 aaPredicted RBP19.91■□□□□ 0.78
CCDC88C-209ENST00000554872 AKAP2Q9Y2D5 859 aa19.91■□□□□ 0.78
CCDC88C-209ENST00000554872 PCDHAC2Q9Y5I4 1007 aa19.91■□□□□ 0.78
CCDC88C-209ENST00000554872 SALL1Q9NSC2 1324 aa19.91■□□□□ 0.78
CCDC88C-209ENST00000554872 UNCXA6NJT0 531 aa19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 HSPA8P11142 646 aaKnown RBP19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 RLBP1P12271 317 aa19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 CRKP46108 304 aa19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 ZNF157P51786 506 aaPredicted RBP19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 MAP3K11Q16584 847 aa19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 REM2Q8IYK8 340 aaPredicted RBP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms