RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 SNAP23O00161 211 aa13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 KIF23Q02241 960 aaPredicted RBP13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 TTLL12Q14166 644 aaPredicted RBP13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 CAVIN4Q5BKX8 364 aa13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 ARMC9Q7Z3E5 817 aa13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 VPS37DQ86XT2 251 aa13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 TDRD7Q8NHU6 1098 aaKnown RBP13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 USP44Q9H0E7 712 aa13.65□□□□□ -0.22
VTI1BP3-201ENST00000550220 FAM205AQ6ZU69 1335 aa13.64□□□□□ -0.23
VTI1BP3-201ENST00000550220 CDCA7LQ96GN5 454 aa13.64□□□□□ -0.23
VTI1BP3-201ENST00000550220 FAM84BQ96KN1 310 aaPredicted RBP13.64□□□□□ -0.23
VTI1BP3-201ENST00000550220 API5Q9BZZ5 524 aaKnown RBP13.64□□□□□ -0.23
VTI1BP3-201ENST00000550220 THSD7BQ9C0I4 1608 aa13.64□□□□□ -0.23
VTI1BP3-201ENST00000550220 UNCXA6NJT0 531 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 PDE8BO95263 885 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 SUPT20HL1Q3ZLR7 823 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 METTL24Q5JXM2 366 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 CERS5Q8N5B7 392 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 ANKRD44Q8N8A2 993 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 TBC1D22AQ8WUA7 517 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 CSRNP1Q96S65 589 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 PUS3Q9BZE2 481 aaKnown RBP13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 DEFB129Q9H1M3 183 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 SERPINA10Q9UK55 444 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 FBXO3Q9UK99 471 aa13.63□□□□□ -0.23
VTI1BP3-201ENST00000550220 SPDYE2BA6NHP3 402 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 IFIT1P09914 478 aaKnown RBP13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 SPDYE6P0CI01 402 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 RBM5P52756 815 aaKnown RBP eCLIP13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 TNFAIP1Q13829 316 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 CFAP100Q494V2 611 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 MFSD14BQ5SR56 506 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 FBXO33Q7Z6M2 555 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 RASAL3Q86YV0 1011 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 ARHGAP45Q92619 1136 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 ABHD8Q96I13 439 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 ZIC5Q96T25 663 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 RNF186Q9NXI6 227 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 PSME4Q14997 1843 aa13.62□□□□□ -0.23
VTI1BP3-201ENST00000550220 COL1A1P02452 1464 aaPredicted RBP13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 F8W031 263 aaPredicted RBP13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 UBE2Q2LH0YL09 131 aa13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 PPP1R12BO60237 982 aaPredicted RBP13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 FRAT2O75474 233 aaPredicted RBP13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 UBTFL1P0CB47 393 aaPredicted RBP13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 GYG1P46976 350 aa13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 PUM3Q15397 648 aaKnown RBP13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 PRAMEF18Q5VWM3 479 aa13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 MRIQ9BWK5 157 aa13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 TSKSQ9UJT2 592 aa13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 NOB1Q9ULX3 412 aaKnown RBP13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 KIF16BQ96L93 1317 aa13.61□□□□□ -0.23
VTI1BP3-201ENST00000550220 POLR2AP24928 1970 aaKnown RBP13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 EYA2O00167 538 aa13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 IPO8O15397 1037 aaKnown RBP13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 TRPA1O75762 1119 aa13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 HDLBPQ00341 1268 aaKnown RBP13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 LRRC24Q50LG9 513 aa13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 PRMT6Q96LA8 375 aaPredicted RBP13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 TTF2Q9UNY4 1162 aaKnown RBP13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 SCAF8Q9UPN6 1271 aaKnown RBP13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 SUGT1Q9Y2Z0 365 aa13.6□□□□□ -0.23
VTI1BP3-201ENST00000550220 TM4SF4P48230 202 aa13.59□□□□□ -0.23
VTI1BP3-201ENST00000550220 SREBF2Q12772 1141 aa13.59□□□□□ -0.23
VTI1BP3-201ENST00000550220 MAP3K11Q16584 847 aa13.59□□□□□ -0.23
VTI1BP3-201ENST00000550220 LDLRAD1Q5T700 205 aa13.59□□□□□ -0.23
VTI1BP3-201ENST00000550220 VGLL2Q8N8G2 317 aa13.59□□□□□ -0.23
VTI1BP3-201ENST00000550220 PAPPA2Q9BXP8 1791 aa13.58□□□□□ -0.23
VTI1BP3-201ENST00000550220 CIAO1O76071 339 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 SLC5A1P13866 664 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 TNNI2P48788 182 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 RARSP54136 660 aaKnown RBP13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 INHBEP58166 350 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 MOB2Q70IA6 237 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 LPIN2Q92539 896 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 SLC10A4Q96EP9 437 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 VEZTQ9HBM0 779 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 ANGEL1Q9UNK9 670 aaKnown RBP13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 JAG2Q9Y219 1238 aa13.58□□□□□ -0.24
VTI1BP3-201ENST00000550220 ALDH1A1P00352 501 aa13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 IREB2P48200 963 aaKnown RBP13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 RFX5P48382 616 aaPredicted RBP13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 PTPN12Q05209 780 aaKnown RBP13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 SPDYE2Q495Y8 402 aa13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 DZIP1LQ8IYY4 767 aaKnown RBP13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 GNL3LQ9NVN8 582 aaKnown RBP13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 CEP126Q9P2H0 1117 aa13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 MAST3O60307 1309 aa13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 SPEF2Q9C093 1822 aa13.57□□□□□ -0.24
VTI1BP3-201ENST00000550220 CLRN2A0PK11 232 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 GNAI3P08754 354 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 ZBTB48P10074 688 aaPredicted RBP13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 FGFR2P21802 821 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 IL15P40933 162 aaPredicted RBP13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 CRKP46108 304 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 BCAMP50895 628 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 DGKZQ13574 1117 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 RASA3Q14644 834 aa13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 NOM1Q5C9Z4 860 aaKnown RBP13.56□□□□□ -0.24
VTI1BP3-201ENST00000550220 KLHDC4Q8TBB5 520 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms