RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 RGMBQ6NW40 437 aa23.38■■□□□ 1.33
CHMP1A-207ENST00000549328 TDRD7Q8NHU6 1098 aaKnown RBP23.38■■□□□ 1.33
CHMP1A-207ENST00000549328 FAM84BQ96KN1 310 aaPredicted RBP23.38■■□□□ 1.33
CHMP1A-207ENST00000549328 HDAC5Q9UQL6 1122 aa23.38■■□□□ 1.33
CHMP1A-207ENST00000549328 FAM205AQ6ZU69 1335 aa23.37■■□□□ 1.33
CHMP1A-207ENST00000549328 KIF16BQ96L93 1317 aa23.37■■□□□ 1.33
CHMP1A-207ENST00000549328 UBTFL1P0CB47 393 aaPredicted RBP23.37■■□□□ 1.33
CHMP1A-207ENST00000549328 MTMR14Q8NCE2 650 aa23.37■■□□□ 1.33
CHMP1A-207ENST00000549328 PDE8BO95263 885 aa23.36■■□□□ 1.33
CHMP1A-207ENST00000549328 METTL24Q5JXM2 366 aa23.36■■□□□ 1.33
CHMP1A-207ENST00000549328 VGLL2Q8N8G2 317 aa23.36■■□□□ 1.33
CHMP1A-207ENST00000549328 CCDC102AQ96A19 550 aa23.36■■□□□ 1.33
CHMP1A-207ENST00000549328 HSPA8P11142 646 aaKnown RBP23.35■■□□□ 1.33
CHMP1A-207ENST00000549328 GYG1P46976 350 aa23.35■■□□□ 1.33
CHMP1A-207ENST00000549328 LBX1P52954 281 aa23.35■■□□□ 1.33
CHMP1A-207ENST00000549328 DLGAP5Q15398 846 aa23.35■■□□□ 1.33
CHMP1A-207ENST00000549328 CA12O43570 354 aa23.34■■□□□ 1.33
CHMP1A-207ENST00000549328 RFX5P48382 616 aaPredicted RBP23.34■■□□□ 1.33
CHMP1A-207ENST00000549328 FBXO33Q7Z6M2 555 aa23.34■■□□□ 1.33
CHMP1A-207ENST00000549328 APOBEC3FQ8IUX4 373 aaKnown RBP23.34■■□□□ 1.33
CHMP1A-207ENST00000549328 KLHDC4Q8TBB5 520 aa23.34■■□□□ 1.33
CHMP1A-207ENST00000549328 FAM155AB1AL88 458 aaPredicted RBP23.33■■□□□ 1.33
CHMP1A-207ENST00000549328 ZNF157P51786 506 aaPredicted RBP23.33■■□□□ 1.33
CHMP1A-207ENST00000549328 CAVIN4Q5BKX8 364 aa23.33■■□□□ 1.33
CHMP1A-207ENST00000549328 INTS3Q68E01 1043 aaKnown RBP23.33■■□□□ 1.33
CHMP1A-207ENST00000549328 FBXO3Q9UK99 471 aa23.33■■□□□ 1.33
CHMP1A-207ENST00000549328 EYA2O00167 538 aa23.32■■□□□ 1.32
CHMP1A-207ENST00000549328 IPO8O15397 1037 aaKnown RBP23.32■■□□□ 1.32
CHMP1A-207ENST00000549328 PTPN12Q05209 780 aaKnown RBP23.32■■□□□ 1.32
CHMP1A-207ENST00000549328 VPS37DQ86XT2 251 aa23.32■■□□□ 1.32
CHMP1A-207ENST00000549328 SCAF8Q9UPN6 1271 aaKnown RBP23.32■■□□□ 1.32
CHMP1A-207ENST00000549328 NF2P35240 595 aa23.31■■□□□ 1.32
CHMP1A-207ENST00000549328 MFSD14BQ5SR56 506 aa23.31■■□□□ 1.32
CHMP1A-207ENST00000549328 JAG2Q9Y219 1238 aa23.31■■□□□ 1.32
CHMP1A-207ENST00000549328 PAPPA2Q9BXP8 1791 aa23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 F8W031 263 aaPredicted RBP23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 MYO1BO43795 1136 aa23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 FGFR2P21802 821 aa23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 HNRNPUQ00839 825 aaKnown RBP eCLIP23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 PUM3Q15397 648 aaKnown RBP23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 CFAP100Q494V2 611 aa23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 PRAMEF18Q5VWM3 479 aa23.3■■□□□ 1.32
CHMP1A-207ENST00000549328 SPDYE2BA6NHP3 402 aa23.29■■□□□ 1.32
CHMP1A-207ENST00000549328 SLC10A3P09131 477 aa23.29■■□□□ 1.32
CHMP1A-207ENST00000549328 IFIT1P09914 478 aaKnown RBP23.29■■□□□ 1.32
CHMP1A-207ENST00000549328 SPDYE6P0CI01 402 aa23.29■■□□□ 1.32
CHMP1A-207ENST00000549328 ZIC5Q96T25 663 aa23.29■■□□□ 1.32
CHMP1A-207ENST00000549328 CIAO1O76071 339 aa23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 GNAI3P08754 354 aa23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 ATG9AQ7Z3C6 839 aa23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 PRMT6Q96LA8 375 aaPredicted RBP23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 MEIS3Q99687 375 aa23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 SERPINA10Q9UK55 444 aa23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 LRRFIP2Q9Y608 721 aaKnown RBP23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 COL1A1P02452 1464 aaPredicted RBP23.28■■□□□ 1.32
CHMP1A-207ENST00000549328 ATF7IPQ6VMQ6 1270 aa23.27■■□□□ 1.32
CHMP1A-207ENST00000549328 TBC1D22AQ8WUA7 517 aa23.27■■□□□ 1.32
CHMP1A-207ENST00000549328 LPIN2Q92539 896 aa23.27■■□□□ 1.32
CHMP1A-207ENST00000549328 DEFB129Q9H1M3 183 aa23.27■■□□□ 1.32
CHMP1A-207ENST00000549328 TTF2Q9UNY4 1162 aaKnown RBP23.27■■□□□ 1.32
CHMP1A-207ENST00000549328 PPP2R3BQ9Y5P8 575 aa23.27■■□□□ 1.32
CHMP1A-207ENST00000549328 FRAT2O75474 233 aaPredicted RBP23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 BCAR3O75815 825 aa23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 TRIM27P14373 513 aa23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 BCAMP50895 628 aa23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 RBM5P52756 815 aaKnown RBP eCLIP23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 KIF23Q02241 960 aaPredicted RBP23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 REM2Q8IYK8 340 aaPredicted RBP23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 PCDHAC2Q9Y5I4 1007 aa23.26■■□□□ 1.31
CHMP1A-207ENST00000549328 UBE2Q2LH0YL09 131 aa23.25■■□□□ 1.31
CHMP1A-207ENST00000549328 SLC5A1P13866 664 aa23.25■■□□□ 1.31
CHMP1A-207ENST00000549328 TTLL12Q14166 644 aaPredicted RBP23.25■■□□□ 1.31
CHMP1A-207ENST00000549328 MOB2Q70IA6 237 aa23.25■■□□□ 1.31
CHMP1A-207ENST00000549328 CEP126Q9P2H0 1117 aa23.25■■□□□ 1.31
CHMP1A-207ENST00000549328 IQSEC3Q9UPP2 1182 aaPredicted RBP23.25■■□□□ 1.31
CHMP1A-207ENST00000549328 ECM29Q5VYK3 1845 aa23.24■■□□□ 1.31
CHMP1A-207ENST00000549328 HDLBPQ00341 1268 aaKnown RBP23.24■■□□□ 1.31
CHMP1A-207ENST00000549328 ARMC9Q7Z3E5 817 aa23.24■■□□□ 1.31
CHMP1A-207ENST00000549328 RASAL3Q86YV0 1011 aa23.24■■□□□ 1.31
CHMP1A-207ENST00000549328 FRAT1Q92837 279 aaPredicted RBP23.24■■□□□ 1.31
CHMP1A-207ENST00000549328 COPRSQ9NQ92 184 aa23.24■■□□□ 1.31
CHMP1A-207ENST00000549328 IL15P40933 162 aaPredicted RBP23.23■■□□□ 1.31
CHMP1A-207ENST00000549328 SIL1Q9H173 461 aa23.23■■□□□ 1.31
CHMP1A-207ENST00000549328 CLRN2A0PK11 232 aa23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 CHAF1AQ13111 956 aaPredicted RBP23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 MTX1Q13505 466 aa23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 CSRNP1Q96S65 589 aa23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 MRIQ9BWK5 157 aa23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 SAGE1Q9NXZ1 904 aa23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 TSKSQ9UJT2 592 aa23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 SUGT1Q9Y2Z0 365 aa23.22■■□□□ 1.31
CHMP1A-207ENST00000549328 CRKP46108 304 aa23.21■■□□□ 1.31
CHMP1A-207ENST00000549328 TNFAIP1Q13829 316 aa23.21■■□□□ 1.31
CHMP1A-207ENST00000549328 SUPT20HL1Q3ZLR7 823 aa23.21■■□□□ 1.31
CHMP1A-207ENST00000549328 SPDYE2Q495Y8 402 aa23.21■■□□□ 1.31
CHMP1A-207ENST00000549328 LDLRAD1Q5T700 205 aa23.21■■□□□ 1.31
CHMP1A-207ENST00000549328 DZIP1LQ8IYY4 767 aaKnown RBP23.21■■□□□ 1.31
CHMP1A-207ENST00000549328 ARAP2Q8WZ64 1704 aa23.21■■□□□ 1.31
CHMP1A-207ENST00000549328 AOX1Q06278 1338 aa23.2■■□□□ 1.3
CHMP1A-207ENST00000549328 ATP2B3Q16720 1220 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms