RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PTPN12Q05209 780 aaKnown RBP16.31■□□□□ 0.2
PTCH1-218ENST00000548945 MAP3K11Q16584 847 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 CCDC57Q2TAC2 916 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 LMBR1LQ6UX01 489 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 DEFB129Q9H1M3 183 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 CHMP3Q9Y3E7 222 aa16.31■□□□□ 0.2
PTCH1-218ENST00000548945 SNAP23O00161 211 aa16.3■□□□□ 0.2
PTCH1-218ENST00000548945 MYO1BO43795 1136 aa16.3■□□□□ 0.2
PTCH1-218ENST00000548945 ALDH1L1O75891 902 aa16.3■□□□□ 0.2
PTCH1-218ENST00000548945 SLC34A2O95436 690 aa16.3■□□□□ 0.2
PTCH1-218ENST00000548945 HELBQ8NG08 1087 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-218ENST00000548945 ZNF296Q8WUU4 475 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-218ENST00000548945 PPP1R12BO60237 982 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-218ENST00000548945 TBC1D8O95759 1140 aa16.29■□□□□ 0.2
PTCH1-218ENST00000548945 ALDH1A1P00352 501 aa16.29■□□□□ 0.2
PTCH1-218ENST00000548945 INHBEP58166 350 aa16.29■□□□□ 0.2
PTCH1-218ENST00000548945 SPRYD7Q5W111 196 aa16.29■□□□□ 0.2
PTCH1-218ENST00000548945 LDHAL6AQ6ZMR3 332 aa16.29■□□□□ 0.2
PTCH1-218ENST00000548945 ANGEL1Q9UNK9 670 aaKnown RBP16.29■□□□□ 0.2
PTCH1-218ENST00000548945 SALL2Q9Y467 1007 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-218ENST00000548945 ARAP2Q8WZ64 1704 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 FAM205AQ6ZU69 1335 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 SPDYE2BA6NHP3 402 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 GPR25O00155 361 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 SPDYE6P0CI01 402 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 TAF7LQ5H9L4 462 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 EPHA10Q5JZY3 1008 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 SPINK5Q9NQ38 1064 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-218ENST00000548945 C9orf78Q9NZ63 289 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-218ENST00000548945 HPS5Q9UPZ3 1129 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 HTTP42858 3142 aa16.28■□□□□ 0.2
PTCH1-218ENST00000548945 SSC5DA1L4H1 1573 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 MANSC4A6NHS7 340 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-218ENST00000548945 ZBTB48P10074 688 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-218ENST00000548945 PRKG1Q13976 671 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 UBE4AQ14139 1066 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 SUPT20HL1Q3ZLR7 823 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 CFAP100Q494V2 611 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 SLC10A4Q96EP9 437 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 SRCIN1Q9C0H9 1055 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 CNNM1Q9NRU3 951 aa16.27■□□□□ 0.2
PTCH1-218ENST00000548945 SOX10P56693 466 aa16.26■□□□□ 0.19
PTCH1-218ENST00000548945 MKRN3Q13064 507 aaKnown RBP16.26■□□□□ 0.19
PTCH1-218ENST00000548945 ZNF594Q96JF6 807 aaPredicted RBP16.26■□□□□ 0.19
PTCH1-218ENST00000548945 F8W031 263 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-218ENST00000548945 FKTNO75072 461 aa16.25■□□□□ 0.19
PTCH1-218ENST00000548945 FBXO46Q6PJ61 603 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-218ENST00000548945 TDRD7Q8NHU6 1098 aaKnown RBP16.25■□□□□ 0.19
PTCH1-218ENST00000548945 PRMT6Q96LA8 375 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-218ENST00000548945 SERPINA10Q9UK55 444 aa16.25■□□□□ 0.19
PTCH1-218ENST00000548945 UTYO14607 1347 aa16.24■□□□□ 0.19
PTCH1-218ENST00000548945 PLIN1O60240 522 aa16.24■□□□□ 0.19
PTCH1-218ENST00000548945 IREB2P48200 963 aaKnown RBP16.24■□□□□ 0.19
PTCH1-218ENST00000548945 TNFAIP1Q13829 316 aa16.24■□□□□ 0.19
PTCH1-218ENST00000548945 PCDHAC2Q9Y5I4 1007 aa16.24■□□□□ 0.19
PTCH1-218ENST00000548945 MROH5Q6ZUA9 1318 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 CLRN2A0PK11 232 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 HIBADHP31937 336 aaKnown RBP16.23■□□□□ 0.19
PTCH1-218ENST00000548945 MFSD14BQ5SR56 506 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 SLC4A10Q6U841 1118 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 IFNL1Q8IU54 200 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 WNK4Q96J92 1243 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 VEZTQ9HBM0 779 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 OTOFQ9HC10 1997 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 CENPFP49454 3210 aa16.23■□□□□ 0.19
PTCH1-218ENST00000548945 ZNF316A6NFI3 1004 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-218ENST00000548945 RBM5P52756 815 aaKnown RBP eCLIP16.22■□□□□ 0.19
PTCH1-218ENST00000548945 RASA3Q14644 834 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 SPDYE2Q495Y8 402 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 NBPF12Q5TAG4 269 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-218ENST00000548945 KAZALD1Q96I82 304 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 SUCLG2Q96I99 432 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 CLMNQ96JQ2 1002 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 FAM84BQ96KN1 310 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-218ENST00000548945 R3HDMLQ9H3Y0 253 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 FZD1Q9UP38 647 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 RIPOR2Q9Y4F9 1068 aa16.22■□□□□ 0.19
PTCH1-218ENST00000548945 KIAA0100Q14667 2235 aaKnown RBP16.22■□□□□ 0.19
PTCH1-218ENST00000548945 ZNF521Q96K83 1311 aa16.21■□□□□ 0.19
PTCH1-218ENST00000548945 USP2O75604 605 aaPredicted RBP16.21■□□□□ 0.19
PTCH1-218ENST00000548945 GYG1P46976 350 aa16.21■□□□□ 0.19
PTCH1-218ENST00000548945 RABL6Q3YEC7 729 aaPredicted RBP16.21■□□□□ 0.19
PTCH1-218ENST00000548945 OTUD7BQ6GQQ9 843 aa16.21■□□□□ 0.19
PTCH1-218ENST00000548945 ANKRD13AQ8IZ07 590 aa16.21■□□□□ 0.19
PTCH1-218ENST00000548945 TTF2Q9UNY4 1162 aaKnown RBP16.21■□□□□ 0.19
PTCH1-218ENST00000548945 JAG2Q9Y219 1238 aa16.21■□□□□ 0.19
PTCH1-218ENST00000548945 AOX1Q06278 1338 aa16.2■□□□□ 0.18
PTCH1-218ENST00000548945 NBPF7P0C2Y1 421 aaPredicted RBP16.2■□□□□ 0.18
PTCH1-218ENST00000548945 FAM9BQ8IZU0 186 aa16.2■□□□□ 0.18
PTCH1-218ENST00000548945 PUS3Q9BZE2 481 aaKnown RBP16.2■□□□□ 0.18
PTCH1-218ENST00000548945 ZNF70Q9UC06 446 aaPredicted RBP16.2■□□□□ 0.18
PTCH1-218ENST00000548945 PTPRCP08575 1304 aa16.19■□□□□ 0.18
PTCH1-218ENST00000548945 TESPA1A2RU30 521 aaPredicted RBP16.19■□□□□ 0.18
PTCH1-218ENST00000548945 IGF2BP3O00425 579 aaKnown RBP eCLIP16.19■□□□□ 0.18
PTCH1-218ENST00000548945 HDLBPQ00341 1268 aaKnown RBP16.19■□□□□ 0.18
PTCH1-218ENST00000548945 FBXO33Q7Z6M2 555 aa16.19■□□□□ 0.18
PTCH1-218ENST00000548945 DZIP1LQ8IYY4 767 aaKnown RBP16.19■□□□□ 0.18
PTCH1-218ENST00000548945 TBC1D22AQ8WUA7 517 aa16.19■□□□□ 0.18
PTCH1-218ENST00000548945 TNNI2P48788 182 aa16.18■□□□□ 0.18
PTCH1-218ENST00000548945 VPS37DQ86XT2 251 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms