RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 SALL3Q9BXA9 1300 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 ANKRD36CQ5JPF3 1778 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 MYH3P11055 1940 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 ANXA1P04083 346 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 BMP1P13497 986 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 G3BP1Q13283 466 aaKnown RBP eCLIP7.57□□□□□ -1.2
SYNE1-239ENST00000545694 TTLL12Q14166 644 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-239ENST00000545694 VPS72Q15906 364 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 RABL6Q3YEC7 729 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-239ENST00000545694 CLASRPQ8N2M8 674 aaKnown RBP7.57□□□□□ -1.2
SYNE1-239ENST00000545694 FNBP4Q8N3X1 1017 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-239ENST00000545694 RHPN1Q8TCX5 695 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 BAP1Q92560 729 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 KIFC2Q96AC6 838 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 ATG3Q9NT62 314 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 CWC25Q9NXE8 425 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-239ENST00000545694 USP35Q9P2H5 1018 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 EXOC6BQ9Y2D4 811 aa7.57□□□□□ -1.2
SYNE1-239ENST00000545694 ERVV-1B6SEH8 477 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 H7C1W4 665 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 CAPN5O15484 640 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-239ENST00000545694 GLRX3O76003 335 aaKnown RBP7.56□□□□□ -1.2
SYNE1-239ENST00000545694 HSP90B1P14625 803 aaKnown RBP7.56□□□□□ -1.2
SYNE1-239ENST00000545694 IL6STP40189 918 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-239ENST00000545694 OS9Q13438 667 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-239ENST00000545694 NBPF14Q5TI25 921 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 NBPF10Q6P3W6 841 aaKnown RBP7.56□□□□□ -1.2
SYNE1-239ENST00000545694 KIF6Q6ZMV9 814 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 TBC1D9Q6ZT07 1266 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 NBPF15Q8N660 670 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 PRR7Q8TB68 274 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 MYD88Q99836 296 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 UNC93B1Q9H1C4 597 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 COPRSQ9NQ92 184 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 EVA1BQ9NVM1 165 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 NUP98P52948 1817 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 RREB1Q92766 1687 aa7.56□□□□□ -1.2
SYNE1-239ENST00000545694 WIPF1O43516 503 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 PTCD1O75127 700 aaKnown RBP7.55□□□□□ -1.2
SYNE1-239ENST00000545694 ADAMTS2O95450 1211 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 GSPT1P15170 499 aaKnown RBP7.55□□□□□ -1.2
SYNE1-239ENST00000545694 SDSP20132 328 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 MFAP1P55081 439 aaKnown RBP7.55□□□□□ -1.2
SYNE1-239ENST00000545694 PIP4K2BP78356 416 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 TCIRG1Q13488 830 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 CWF19L2Q2TBE0 894 aaKnown RBP7.55□□□□□ -1.2
SYNE1-239ENST00000545694 TRIM46Q7Z4K8 759 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 SNX21Q969T3 373 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 SUCLG2Q96I99 432 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 AK7Q96M32 723 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 ANP32EQ9BTT0 268 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 ISCA1Q9BUE6 129 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 PLA2G12BQ9BX93 195 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 TJP1Q07157 1748 aa7.55□□□□□ -1.2
SYNE1-239ENST00000545694 A0A087WZG4 1122 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 HIP1O00291 1037 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 SMARCA5O60264 1052 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-239ENST00000545694 CYP19A1P11511 503 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-239ENST00000545694 MCCP23508 829 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 CASP7P55210 303 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 KCNH2Q12809 1159 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 PTPRNQ16849 979 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 GIGYF2Q6Y7W6 1299 aaKnown RBP7.54□□□□□ -1.2
SYNE1-239ENST00000545694 C16orf71Q8IYS4 520 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-239ENST00000545694 CNTROBQ8N137 903 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 NGLY1Q96IV0 654 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 BICC1Q9H694 974 aaKnown RBP7.54□□□□□ -1.2
SYNE1-239ENST00000545694 GPR108Q9NPR9 543 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 ASAP1Q9ULH1 1129 aa7.54□□□□□ -1.2
SYNE1-239ENST00000545694 MAP3K15Q6ZN16 1313 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 CDHR2Q9BYE9 1310 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 NUTM2BA6NNL0 878 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-239ENST00000545694 NUTM2EB1AL46 878 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-239ENST00000545694 APBB1O00213 710 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 ZMYND10O75800 440 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 CIAO1O76071 339 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 A1BGP04217 495 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 PCCAP05165 728 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-239ENST00000545694 IFIT2P09913 472 aaKnown RBP7.53□□□□□ -1.2
SYNE1-239ENST00000545694 ANAPC15P60006 121 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 INSM1Q01101 510 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-239ENST00000545694 RABEP1Q15276 862 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 NUTM2AQ8IVF1 878 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-239ENST00000545694 RUFY2Q8WXA3 655 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 KAZALD1Q96I82 304 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 BEGAINQ9BUH8 593 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 ECHDC1Q9NTX5 307 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 STK17AQ9UEE5 414 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 CCDC9Q9Y3X0 531 aaKnown RBP7.53□□□□□ -1.2
SYNE1-239ENST00000545694 TLL2Q9Y6L7 1015 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 BCL9LQ86UU0 1499 aa7.53□□□□□ -1.2
SYNE1-239ENST00000545694 SPEF2Q9C093 1822 aa7.52□□□□□ -1.2
SYNE1-239ENST00000545694 THSD7AQ9UPZ6 1657 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 RFX7Q2KHR2 1363 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 VEGFBP49765 207 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 MTMR2Q13614 643 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 TTLL7Q6ZT98 887 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 UBE3BQ7Z3V4 1068 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 HSCBQ8IWL3 235 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 DNAJC10Q8IXB1 793 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms