RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ZIC5Q96T25 663 aa16.51■□□□□ 0.23
RTN3-212ENST00000543123 SLFN5Q08AF3 891 aa16.5■□□□□ 0.23
RTN3-212ENST00000543123 ARMC9Q7Z3E5 817 aa16.5■□□□□ 0.23
RTN3-212ENST00000543123 SSH1Q8WYL5 1049 aa16.5■□□□□ 0.23
RTN3-212ENST00000543123 ZBED3Q96IU2 234 aaPredicted RBP16.5■□□□□ 0.23
RTN3-212ENST00000543123 BICC1Q9H694 974 aaKnown RBP16.5■□□□□ 0.23
RTN3-212ENST00000543123 PPP2R3BQ9Y5P8 575 aa16.5■□□□□ 0.23
RTN3-212ENST00000543123 AKAP11Q9UKA4 1901 aa16.49■□□□□ 0.23
RTN3-212ENST00000543123 CT47B1P0C2W7 299 aaPredicted RBP16.49■□□□□ 0.23
RTN3-212ENST00000543123 HIBADHP31937 336 aaKnown RBP16.49■□□□□ 0.23
RTN3-212ENST00000543123 RABL6Q3YEC7 729 aaPredicted RBP16.49■□□□□ 0.23
RTN3-212ENST00000543123 SCAF8Q9UPN6 1271 aaKnown RBP16.49■□□□□ 0.23
RTN3-212ENST00000543123 UBE2Q2LH0YL09 131 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 PRAMEF18Q5VWM3 479 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 VPS37DQ86XT2 251 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 CERS5Q8N5B7 392 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 KAZALD1Q96I82 304 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 CSRNP1Q96S65 589 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 SMC4Q9NTJ3 1288 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 RNF186Q9NXI6 227 aa16.48■□□□□ 0.23
RTN3-212ENST00000543123 FAM205AQ6ZU69 1335 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 ECM29Q5VYK3 1845 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 SPDYE2BA6NHP3 402 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 F8W031 263 aaPredicted RBP16.47■□□□□ 0.23
RTN3-212ENST00000543123 TRPA1O75762 1119 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 SPDYE6P0CI01 402 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 CFAP100Q494V2 611 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 METTL24Q5JXM2 366 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 DEFB129Q9H1M3 183 aa16.47■□□□□ 0.23
RTN3-212ENST00000543123 CASP8AP2Q9UKL3 1982 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 CCER2I3L3R5 266 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 RBM5P52756 815 aaKnown RBP eCLIP16.46■□□□□ 0.23
RTN3-212ENST00000543123 DGKZQ13574 1117 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 CAVIN4Q5BKX8 364 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 MFSD14BQ5SR56 506 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 MOB2Q70IA6 237 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 TDRD7Q8NHU6 1098 aaKnown RBP16.46■□□□□ 0.23
RTN3-212ENST00000543123 MCOLN1Q9GZU1 580 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 RIPOR2Q9Y4F9 1068 aa16.46■□□□□ 0.23
RTN3-212ENST00000543123 PPP1R12BO60237 982 aaPredicted RBP16.45■□□□□ 0.22
RTN3-212ENST00000543123 FRAT2O75474 233 aaPredicted RBP16.45■□□□□ 0.22
RTN3-212ENST00000543123 GYG1P46976 350 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 SREBF2Q12772 1141 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 TNFAIP1Q13829 316 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 SUPT20HL1Q3ZLR7 823 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 ANKRD44Q8N8A2 993 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 FAM84BQ96KN1 310 aaPredicted RBP16.45■□□□□ 0.22
RTN3-212ENST00000543123 PUS3Q9BZE2 481 aaKnown RBP16.45■□□□□ 0.22
RTN3-212ENST00000543123 SERPINA10Q9UK55 444 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 HDAC5Q9UQL6 1122 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 ARAP2Q8WZ64 1704 aa16.45■□□□□ 0.22
RTN3-212ENST00000543123 UNCXA6NJT0 531 aa16.44■□□□□ 0.22
RTN3-212ENST00000543123 CCDC85CA6NKD9 419 aa16.44■□□□□ 0.22
RTN3-212ENST00000543123 TBC1D22AQ8WUA7 517 aa16.44■□□□□ 0.22
RTN3-212ENST00000543123 USP44Q9H0E7 712 aa16.44■□□□□ 0.22
RTN3-212ENST00000543123 VEZTQ9HBM0 779 aa16.44■□□□□ 0.22
RTN3-212ENST00000543123 ANGEL1Q9UNK9 670 aaKnown RBP16.44■□□□□ 0.22
RTN3-212ENST00000543123 TTF2Q9UNY4 1162 aaKnown RBP16.44■□□□□ 0.22
RTN3-212ENST00000543123 JAG2Q9Y219 1238 aa16.44■□□□□ 0.22
RTN3-212ENST00000543123 KIF16BQ96L93 1317 aa16.44■□□□□ 0.22
RTN3-212ENST00000543123 CLRN2A0PK11 232 aa16.43■□□□□ 0.22
RTN3-212ENST00000543123 PDE8BO95263 885 aa16.43■□□□□ 0.22
RTN3-212ENST00000543123 PRKG1Q13976 671 aa16.43■□□□□ 0.22
RTN3-212ENST00000543123 PUM3Q15397 648 aaKnown RBP16.43■□□□□ 0.22
RTN3-212ENST00000543123 IFIT1P09914 478 aaKnown RBP16.42■□□□□ 0.22
RTN3-212ENST00000543123 UBTFL1P0CB47 393 aaPredicted RBP16.42■□□□□ 0.22
RTN3-212ENST00000543123 PTPN12Q05209 780 aaKnown RBP16.42■□□□□ 0.22
RTN3-212ENST00000543123 LRRC24Q50LG9 513 aa16.42■□□□□ 0.22
RTN3-212ENST00000543123 LDLRAD1Q5T700 205 aa16.42■□□□□ 0.22
RTN3-212ENST00000543123 FBXO33Q7Z6M2 555 aa16.42■□□□□ 0.22
RTN3-212ENST00000543123 TRMT2AQ8IZ69 625 aaKnown RBP16.42■□□□□ 0.22
RTN3-212ENST00000543123 CDCA7LQ96GN5 454 aa16.42■□□□□ 0.22
RTN3-212ENST00000543123 PRMT6Q96LA8 375 aaPredicted RBP16.42■□□□□ 0.22
RTN3-212ENST00000543123 API5Q9BZZ5 524 aaKnown RBP16.42■□□□□ 0.22
RTN3-212ENST00000543123 IREB2P48200 963 aaKnown RBP16.41■□□□□ 0.22
RTN3-212ENST00000543123 TM4SF4P48230 202 aa16.41■□□□□ 0.22
RTN3-212ENST00000543123 MAP3K11Q16584 847 aa16.41■□□□□ 0.22
RTN3-212ENST00000543123 VGLL2Q8N8G2 317 aa16.41■□□□□ 0.22
RTN3-212ENST00000543123 SLC10A4Q96EP9 437 aa16.41■□□□□ 0.22
RTN3-212ENST00000543123 ZBTB48P10074 688 aaPredicted RBP16.4■□□□□ 0.22
RTN3-212ENST00000543123 TNNI2P48788 182 aa16.4■□□□□ 0.22
RTN3-212ENST00000543123 INHBEP58166 350 aa16.4■□□□□ 0.22
RTN3-212ENST00000543123 RASA3Q14644 834 aa16.4■□□□□ 0.22
RTN3-212ENST00000543123 SPDYE2Q495Y8 402 aa16.4■□□□□ 0.22
RTN3-212ENST00000543123 FBXO3Q9UK99 471 aa16.4■□□□□ 0.22
RTN3-212ENST00000543123 MAST3O60307 1309 aa16.4■□□□□ 0.22
RTN3-212ENST00000543123 MANSC4A6NHS7 340 aaPredicted RBP16.39■□□□□ 0.21
RTN3-212ENST00000543123 EYA2O00167 538 aa16.39■□□□□ 0.21
RTN3-212ENST00000543123 ALDH1A1P00352 501 aa16.39■□□□□ 0.21
RTN3-212ENST00000543123 SLC5A1P13866 664 aa16.39■□□□□ 0.21
RTN3-212ENST00000543123 HDLBPQ00341 1268 aaKnown RBP16.39■□□□□ 0.21
RTN3-212ENST00000543123 MKRN3Q13064 507 aaKnown RBP16.39■□□□□ 0.21
RTN3-212ENST00000543123 CHAF1AQ13111 956 aaPredicted RBP16.39■□□□□ 0.21
RTN3-212ENST00000543123 NOM1Q5C9Z4 860 aaKnown RBP16.39■□□□□ 0.21
RTN3-212ENST00000543123 SPRYD7Q5W111 196 aa16.39■□□□□ 0.21
RTN3-212ENST00000543123 CTU1Q7Z7A3 348 aaKnown RBP16.39■□□□□ 0.21
RTN3-212ENST00000543123 DZIP1LQ8IYY4 767 aaKnown RBP16.39■□□□□ 0.21
RTN3-212ENST00000543123 KLHDC4Q8TBB5 520 aa16.39■□□□□ 0.21
RTN3-212ENST00000543123 SUGT1Q9Y2Z0 365 aa16.39■□□□□ 0.21
RTN3-212ENST00000543123 PCDHAC2Q9Y5I4 1007 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms