RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 REM2Q8IYK8 340 aaPredicted RBP19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 MRS2Q9HD23 443 aa19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 CHMP3Q9Y3E7 222 aa19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 OTOFQ9HC10 1997 aa19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 CLRN2A0PK11 232 aa19.72■□□□□ 0.75
CLSTN3-213ENST00000541953 CLMNQ96JQ2 1002 aa19.72■□□□□ 0.75
CLSTN3-213ENST00000541953 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.72■□□□□ 0.75
CLSTN3-213ENST00000541953 ANGEL1Q9UNK9 670 aaKnown RBP19.72■□□□□ 0.75
CLSTN3-213ENST00000541953 GPR25O00155 361 aa19.71■□□□□ 0.75
CLSTN3-213ENST00000541953 LMBR1LQ6UX01 489 aa19.71■□□□□ 0.75
CLSTN3-213ENST00000541953 C15orf52Q6ZUT6 534 aaKnown RBP19.71■□□□□ 0.75
CLSTN3-213ENST00000541953 DEFB129Q9H1M3 183 aa19.71■□□□□ 0.75
CLSTN3-213ENST00000541953 HDAC9Q9UKV0 1011 aa19.71■□□□□ 0.75
CLSTN3-213ENST00000541953 ARAP2Q8WZ64 1704 aa19.71■□□□□ 0.75
CLSTN3-213ENST00000541953 IL1R1P14778 569 aa19.7■□□□□ 0.74
CLSTN3-213ENST00000541953 NF2P35240 595 aa19.7■□□□□ 0.74
CLSTN3-213ENST00000541953 IFIT5Q13325 482 aaKnown RBP19.7■□□□□ 0.74
CLSTN3-213ENST00000541953 SPRYD7Q5W111 196 aa19.7■□□□□ 0.74
CLSTN3-213ENST00000541953 PRMT6Q96LA8 375 aaPredicted RBP19.7■□□□□ 0.74
CLSTN3-213ENST00000541953 COL1A1P02452 1464 aaPredicted RBP19.7■□□□□ 0.74
CLSTN3-213ENST00000541953 DLGAP5Q15398 846 aa19.69■□□□□ 0.74
CLSTN3-213ENST00000541953 CFAP100Q494V2 611 aa19.69■□□□□ 0.74
CLSTN3-213ENST00000541953 NCBP3Q53F19 620 aaKnown RBP19.69■□□□□ 0.74
CLSTN3-213ENST00000541953 CDAN1Q8IWY9 1227 aa19.69■□□□□ 0.74
CLSTN3-213ENST00000541953 MTMR14Q8NCE2 650 aa19.69■□□□□ 0.74
CLSTN3-213ENST00000541953 SPDYE2BA6NHP3 402 aa19.68■□□□□ 0.74
CLSTN3-213ENST00000541953 PLIN1O60240 522 aa19.68■□□□□ 0.74
CLSTN3-213ENST00000541953 SPDYE6P0CI01 402 aa19.68■□□□□ 0.74
CLSTN3-213ENST00000541953 GJA5P36382 358 aa19.68■□□□□ 0.74
CLSTN3-213ENST00000541953 ARMC9Q7Z3E5 817 aa19.68■□□□□ 0.74
CLSTN3-213ENST00000541953 WDR63Q8IWG1 891 aa19.68■□□□□ 0.74
CLSTN3-213ENST00000541953 KAZALD1Q96I82 304 aa19.68■□□□□ 0.74
CLSTN3-213ENST00000541953 GRM8O00222 908 aa19.67■□□□□ 0.74
CLSTN3-213ENST00000541953 NBPF12Q5TAG4 269 aaPredicted RBP19.67■□□□□ 0.74
CLSTN3-213ENST00000541953 PUS3Q9BZE2 481 aaKnown RBP19.67■□□□□ 0.74
CLSTN3-213ENST00000541953 IGF2BP3O00425 579 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLSTN3-213ENST00000541953 MMP14P50281 582 aa19.66■□□□□ 0.74
CLSTN3-213ENST00000541953 MAP3K11Q16584 847 aa19.66■□□□□ 0.74
CLSTN3-213ENST00000541953 ZNF804AQ7Z570 1209 aa19.66■□□□□ 0.74
CLSTN3-213ENST00000541953 WNK4Q96J92 1243 aa19.66■□□□□ 0.74
CLSTN3-213ENST00000541953 VEZTQ9HBM0 779 aa19.66■□□□□ 0.74
CLSTN3-213ENST00000541953 CAP1Q01518 475 aa19.65■□□□□ 0.74
CLSTN3-213ENST00000541953 SREBF2Q12772 1141 aa19.65■□□□□ 0.74
CLSTN3-213ENST00000541953 GRIK5Q16478 980 aa19.65■□□□□ 0.74
CLSTN3-213ENST00000541953 SUCLG2Q96I99 432 aa19.65■□□□□ 0.74
CLSTN3-213ENST00000541953 CFHR5Q9BXR6 569 aa19.65■□□□□ 0.74
CLSTN3-213ENST00000541953 GYG1P46976 350 aa19.64■□□□□ 0.73
CLSTN3-213ENST00000541953 NOM1Q5C9Z4 860 aaKnown RBP19.64■□□□□ 0.73
CLSTN3-213ENST00000541953 LDHAL6AQ6ZMR3 332 aa19.64■□□□□ 0.73
CLSTN3-213ENST00000541953 FKTNO75072 461 aa19.63■□□□□ 0.73
CLSTN3-213ENST00000541953 FKBP1AP62942 108 aaKnown RBP19.63■□□□□ 0.73
CLSTN3-213ENST00000541953 IFNL1Q8IU54 200 aa19.63■□□□□ 0.73
CLSTN3-213ENST00000541953 CNNM1Q9NRU3 951 aa19.63■□□□□ 0.73
CLSTN3-213ENST00000541953 FAM205AQ6ZU69 1335 aa19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 USP2O75604 605 aaPredicted RBP19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 NBPF7P0C2Y1 421 aaPredicted RBP19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 RASA3Q14644 834 aa19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 CCDC57Q2TAC2 916 aa19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 FBXO46Q6PJ61 603 aaPredicted RBP19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 SLC4A10Q6U841 1118 aa19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 TDRD7Q8NHU6 1098 aaKnown RBP19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 SLC10A4Q96EP9 437 aa19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 FAM84BQ96KN1 310 aaPredicted RBP19.62■□□□□ 0.73
CLSTN3-213ENST00000541953 PKN2Q16513 984 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-213ENST00000541953 TAF7LQ5H9L4 462 aa19.61■□□□□ 0.73
CLSTN3-213ENST00000541953 MFSD14BQ5SR56 506 aa19.61■□□□□ 0.73
CLSTN3-213ENST00000541953 CNKSR2Q8WXI2 1034 aa19.61■□□□□ 0.73
CLSTN3-213ENST00000541953 PPP2R3BQ9Y5P8 575 aa19.61■□□□□ 0.73
CLSTN3-213ENST00000541953 MANSC4A6NHS7 340 aaPredicted RBP19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 RBM5P52756 815 aaKnown RBP eCLIP19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 SPDYE2Q495Y8 402 aa19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 TEPSINQ96N21 525 aa19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 PTPN18Q99952 460 aa19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 TDRD3Q9H7E2 651 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 C9orf78Q9NZ63 289 aaPredicted RBP19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 IQSEC3Q9UPP2 1182 aaPredicted RBP19.6■□□□□ 0.73
CLSTN3-213ENST00000541953 ALDH1L1O75891 902 aa19.59■□□□□ 0.73
CLSTN3-213ENST00000541953 ZBTB48P10074 688 aaPredicted RBP19.59■□□□□ 0.73
CLSTN3-213ENST00000541953 ANKRD44Q8N8A2 993 aa19.59■□□□□ 0.73
CLSTN3-213ENST00000541953 SRCIN1Q9C0H9 1055 aa19.59■□□□□ 0.73
CLSTN3-213ENST00000541953 ZNF70Q9UC06 446 aaPredicted RBP19.59■□□□□ 0.73
CLSTN3-213ENST00000541953 TTF2Q9UNY4 1162 aaKnown RBP19.59■□□□□ 0.73
CLSTN3-213ENST00000541953 RIPOR2Q9Y4F9 1068 aa19.59■□□□□ 0.73
CLSTN3-213ENST00000541953 ZSWIM8A7E2V4 1837 aa19.58■□□□□ 0.73
CLSTN3-213ENST00000541953 MYO1BO43795 1136 aa19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 PPP1R12BO60237 982 aaPredicted RBP19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 CRHR2Q13324 411 aa19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 LRRC24Q50LG9 513 aa19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 OTOP1Q7RTM1 612 aa19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 FAM9BQ8IZU0 186 aa19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 BICC1Q9H694 974 aaKnown RBP19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 ELP3Q9H9T3 547 aa19.58■□□□□ 0.72
CLSTN3-213ENST00000541953 ZNF521Q96K83 1311 aa19.57■□□□□ 0.72
CLSTN3-213ENST00000541953 ANP32CO43423 234 aa19.57■□□□□ 0.72
CLSTN3-213ENST00000541953 HIBADHP31937 336 aaKnown RBP19.57■□□□□ 0.72
CLSTN3-213ENST00000541953 UBE4AQ14139 1066 aa19.57■□□□□ 0.72
CLSTN3-213ENST00000541953 KLHDC4Q8TBB5 520 aa19.57■□□□□ 0.72
CLSTN3-213ENST00000541953 TMEM39BQ9GZU3 492 aa19.57■□□□□ 0.72
CLSTN3-213ENST00000541953 TRIM17Q9Y577 477 aa19.57■□□□□ 0.72
CLSTN3-213ENST00000541953 UTYO14607 1347 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms