RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 SCNN1DP51172 638 aa23.06■■□□□ 1.28
VPS33A-205ENST00000541169 CCDC102BQ68D86 513 aa23.06■■□□□ 1.28
VPS33A-205ENST00000541169 OGFOD1Q8N543 542 aa23.06■■□□□ 1.28
VPS33A-205ENST00000541169 WDR66Q8TBY9 1149 aa23.06■■□□□ 1.28
VPS33A-205ENST00000541169 KCNQ5Q9NR82 932 aa23.06■■□□□ 1.28
VPS33A-205ENST00000541169 SUGT1Q9Y2Z0 365 aa23.06■■□□□ 1.28
VPS33A-205ENST00000541169 ZNF512BQ96KM6 892 aaPredicted RBP23.05■■□□□ 1.28
VPS33A-205ENST00000541169 NMRK2Q9NPI5 230 aa23.05■■□□□ 1.28
VPS33A-205ENST00000541169 ADARB2Q9NS39 739 aaKnown RBP23.05■■□□□ 1.28
VPS33A-205ENST00000541169 ZBTB47Q9UFB7 747 aaPredicted RBP23.05■■□□□ 1.28
VPS33A-205ENST00000541169 IGSF3O75054 1194 aa23.04■■□□□ 1.28
VPS33A-205ENST00000541169 USP50Q70EL3 339 aaPredicted RBP23.04■■□□□ 1.28
VPS33A-205ENST00000541169 ZGPATQ8N5A5 531 aaKnown RBP23.04■■□□□ 1.28
VPS33A-205ENST00000541169 FBXW7Q969H0 707 aa23.04■■□□□ 1.28
VPS33A-205ENST00000541169 GMLQ99445 158 aa23.04■■□□□ 1.28
VPS33A-205ENST00000541169 CNOT7Q9UIV1 285 aaKnown RBP23.04■■□□□ 1.28
VPS33A-205ENST00000541169 HDAC9Q9UKV0 1011 aa23.04■■□□□ 1.28
VPS33A-205ENST00000541169 MYH13Q9UKX3 1938 aa23.04■■□□□ 1.28
VPS33A-205ENST00000541169 NEFLP07196 543 aa23.03■■□□□ 1.28
VPS33A-205ENST00000541169 USP17L8P0C7I0 530 aa23.03■■□□□ 1.28
VPS33A-205ENST00000541169 EPHX2P34913 555 aa23.03■■□□□ 1.28
VPS33A-205ENST00000541169 TAF1DQ9H5J8 278 aaPredicted RBP23.03■■□□□ 1.28
VPS33A-205ENST00000541169 POTECB2RU33 542 aa23.02■■□□□ 1.28
VPS33A-205ENST00000541169 IFIT2P09913 472 aaKnown RBP23.02■■□□□ 1.28
VPS33A-205ENST00000541169 ARID4AP29374 1257 aaPredicted RBP23.02■■□□□ 1.28
VPS33A-205ENST00000541169 MFSD14BQ5SR56 506 aa23.02■■□□□ 1.28
VPS33A-205ENST00000541169 AACSQ86V21 672 aa23.02■■□□□ 1.28
VPS33A-205ENST00000541169 EAF2Q96CJ1 260 aaPredicted RBP23.02■■□□□ 1.28
VPS33A-205ENST00000541169 SALL1Q9NSC2 1324 aa23.02■■□□□ 1.28
VPS33A-205ENST00000541169 ZNF646O15015 1829 aaPredicted RBP23.01■■□□□ 1.27
VPS33A-205ENST00000541169 KIF3CO14782 793 aa23.01■■□□□ 1.27
VPS33A-205ENST00000541169 TOMM70O94826 608 aa23.01■■□□□ 1.27
VPS33A-205ENST00000541169 ADORA1P30542 326 aa23.01■■□□□ 1.27
VPS33A-205ENST00000541169 PHKA1P46020 1223 aa23.01■■□□□ 1.27
VPS33A-205ENST00000541169 ZNF280AP59817 542 aaPredicted RBP23.01■■□□□ 1.27
VPS33A-205ENST00000541169 MICALL2Q8IY33 904 aa23.01■■□□□ 1.27
VPS33A-205ENST00000541169 ZBTB12Q9Y330 459 aaPredicted RBP23.01■■□□□ 1.27
VPS33A-205ENST00000541169 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.01■■□□□ 1.27
VPS33A-205ENST00000541169 MAST3O60307 1309 aa23.01■■□□□ 1.27
VPS33A-205ENST00000541169 APBB1O00213 710 aa23■■□□□ 1.27
VPS33A-205ENST00000541169 ZC3H15Q8WU90 426 aaKnown RBP23■■□□□ 1.27
VPS33A-205ENST00000541169 EPS15P42566 896 aa22.99■■□□□ 1.27
VPS33A-205ENST00000541169 TTC39AQ5SRH9 613 aa22.99■■□□□ 1.27
VPS33A-205ENST00000541169 RBM46Q8TBY0 533 aaKnown RBP22.99■■□□□ 1.27
VPS33A-205ENST00000541169 DBNDD2Q9BQY9 259 aa22.99■■□□□ 1.27
VPS33A-205ENST00000541169 MRIQ9BWK5 157 aa22.99■■□□□ 1.27
VPS33A-205ENST00000541169 IL1RAPL2Q9NP60 686 aa22.99■■□□□ 1.27
VPS33A-205ENST00000541169 DBNLQ9UJU6 430 aaKnown RBP22.99■■□□□ 1.27
VPS33A-205ENST00000541169 SPTY2D1Q68D10 685 aaPredicted RBP22.98■■□□□ 1.27
VPS33A-205ENST00000541169 LDHDQ86WU2 507 aa22.98■■□□□ 1.27
VPS33A-205ENST00000541169 IQSEC3Q9UPP2 1182 aaPredicted RBP22.98■■□□□ 1.27
VPS33A-205ENST00000541169 IRX6P78412 446 aaPredicted RBP22.97■■□□□ 1.27
VPS33A-205ENST00000541169 HDLBPQ00341 1268 aaKnown RBP22.97■■□□□ 1.27
VPS33A-205ENST00000541169 CHAF1AQ13111 956 aaPredicted RBP22.97■■□□□ 1.27
VPS33A-205ENST00000541169 RASGRF1Q13972 1273 aa22.97■■□□□ 1.27
VPS33A-205ENST00000541169 SPATA5Q8NB90 893 aa22.97■■□□□ 1.27
VPS33A-205ENST00000541169 GPATCH3Q96I76 525 aa22.97■■□□□ 1.27
VPS33A-205ENST00000541169 CCDC8Q9H0W5 538 aaPredicted RBP22.97■■□□□ 1.27
VPS33A-205ENST00000541169 TMED8Q6PL24 325 aaPredicted RBP22.96■■□□□ 1.27
VPS33A-205ENST00000541169 SMC5Q8IY18 1101 aa22.96■■□□□ 1.27
VPS33A-205ENST00000541169 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.96■■□□□ 1.27
VPS33A-205ENST00000541169 FSTL1Q12841 308 aa22.95■■□□□ 1.26
VPS33A-205ENST00000541169 KIAA0825Q8IV33 1275 aa22.95■■□□□ 1.26
VPS33A-205ENST00000541169 CERS5Q8N5B7 392 aa22.95■■□□□ 1.26
VPS33A-205ENST00000541169 MTMR14Q8NCE2 650 aa22.95■■□□□ 1.26
VPS33A-205ENST00000541169 SMC1BQ8NDV3 1235 aa22.95■■□□□ 1.26
VPS33A-205ENST00000541169 MYOZ2Q9NPC6 264 aa22.95■■□□□ 1.26
VPS33A-205ENST00000541169 SERPINA10Q9UK55 444 aa22.95■■□□□ 1.26
VPS33A-205ENST00000541169 KIF4BQ2VIQ3 1234 aa22.94■■□□□ 1.26
VPS33A-205ENST00000541169 ERICH6BQ5W0A0 696 aa22.94■■□□□ 1.26
VPS33A-205ENST00000541169 SLF2Q8IX21 1173 aa22.94■■□□□ 1.26
VPS33A-205ENST00000541169 HMG20BQ9P0W2 317 aa22.94■■□□□ 1.26
VPS33A-205ENST00000541169 LDHBP07195 334 aaKnown RBP22.93■■□□□ 1.26
VPS33A-205ENST00000541169 EAPPQ56P03 285 aaPredicted RBP22.93■■□□□ 1.26
VPS33A-205ENST00000541169 PGAP2Q9UHJ9 254 aa22.93■■□□□ 1.26
VPS33A-205ENST00000541169 TTF2Q9UNY4 1162 aaKnown RBP22.93■■□□□ 1.26
VPS33A-205ENST00000541169 MYO1BO43795 1136 aa22.92■■□□□ 1.26
VPS33A-205ENST00000541169 MCAMP43121 646 aa22.92■■□□□ 1.26
VPS33A-205ENST00000541169 CHADLQ6NUI6 762 aa22.92■■□□□ 1.26
VPS33A-205ENST00000541169 MXD3Q9BW11 206 aa22.92■■□□□ 1.26
VPS33A-205ENST00000541169 TLR7Q9NYK1 1049 aaKnown RBP22.92■■□□□ 1.26
VPS33A-205ENST00000541169 ADAMTSL1Q8N6G6 1762 aa22.91■■□□□ 1.26
VPS33A-205ENST00000541169 TTF1Q15361 905 aaPredicted RBP22.91■■□□□ 1.26
VPS33A-205ENST00000541169 DLGAP5Q15398 846 aa22.91■■□□□ 1.26
VPS33A-205ENST00000541169 ANKRD45Q5TZF3 282 aa22.91■■□□□ 1.26
VPS33A-205ENST00000541169 TEKT1Q969V4 418 aa22.91■■□□□ 1.26
VPS33A-205ENST00000541169 JAG2Q9Y219 1238 aa22.91■■□□□ 1.26
VPS33A-205ENST00000541169 CLEC11AQ9Y240 323 aa22.91■■□□□ 1.26
VPS33A-205ENST00000541169 COL1A1P02452 1464 aaPredicted RBP22.91■■□□□ 1.26
VPS33A-205ENST00000541169 TTC41PQ6P2S7 1318 aa22.9■■□□□ 1.26
VPS33A-205ENST00000541169 ATP5JP18859 108 aa22.9■■□□□ 1.26
VPS33A-205ENST00000541169 HHIPL2Q6UWX4 724 aa22.9■■□□□ 1.26
VPS33A-205ENST00000541169 SAMD7Q7Z3H4 446 aa22.9■■□□□ 1.26
VPS33A-205ENST00000541169 ECHDC1Q9NTX5 307 aa22.9■■□□□ 1.26
VPS33A-205ENST00000541169 PITPNM2Q9BZ72 1349 aa22.89■■□□□ 1.26
VPS33A-205ENST00000541169 IGHDP01880 384 aa22.89■■□□□ 1.25
VPS33A-205ENST00000541169 GSTO1P78417 241 aa22.89■■□□□ 1.25
VPS33A-205ENST00000541169 TBC1D10BQ4KMP7 808 aaPredicted RBP22.89■■□□□ 1.25
VPS33A-205ENST00000541169 ERICH6Q7L0X2 663 aa22.89■■□□□ 1.25
VPS33A-205ENST00000541169 ABCF2Q9UG63 623 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms