RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 ZGPATQ8N5A5 531 aaKnown RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 MTRF1LQ9UGC7 380 aaKnown RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 EXOC5O00471 708 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 SPTLC2O15270 562 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 ZEB2O60315 1214 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 PLCB3Q01970 1234 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 PDE1CQ14123 709 aaPredicted RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 KIAA1524Q8TCG1 905 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 SAMD15Q9P1V8 674 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 URB2Q14146 1524 aaKnown RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 SETDB1Q15047 1291 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 PEG3Q9GZU2 1588 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 TRIM75PA6NK02 468 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 WASLO00401 505 aaPredicted RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 FAM13AO94988 1023 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 LMOD1P29536 600 aaPredicted RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 VAV2P52735 878 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 ZNF569Q5MCW4 686 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 TSGA10Q9BZW7 698 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 GUCA1BQ9UMX6 200 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 SNRPA1P09661 255 aaKnown RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 STIM2Q9P246 746 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 SMIM23A6NLE4 172 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 KARSQ15046 597 aaKnown RBP11.21□□□□□ -0.61
COL4A6-208ENST00000538570 IFT81Q8WYA0 676 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 ARHGAP45Q92619 1136 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 SPATS2LQ9NUQ6 558 aaKnown RBP11.21□□□□□ -0.61
COL4A6-208ENST00000538570 TXNDC16Q9P2K2 825 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 TUBBP07437 444 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 ALDH3A1P30838 453 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 PRIM1P49642 420 aaKnown RBP11.21□□□□□ -0.61
COL4A6-208ENST00000538570 SNX21Q969T3 373 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 C6orf50Q9HD87 102 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 RTL9Q8NET4 1388 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 PDE1AP54750 535 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 TNNC1P63316 161 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 KCNK9Q9NPC2 374 aa11.21□□□□□ -0.61
COL4A6-208ENST00000538570 KRT2P35908 639 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 TERF1P54274 439 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 PPP2R5AQ15172 486 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 FAM76AQ8TAV0 307 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 JAKMIP2Q96AA8 810 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 CALM1P0DP23 149 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 CALM2P0DP24 149 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 CALM3P0DP25 149 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 SMARCC2Q8TAQ2 1214 aa11.21□□□□□ -0.62
COL4A6-208ENST00000538570 SEC62Q99442 399 aaKnown RBP11.21□□□□□ -0.62
COL4A6-208ENST00000538570 CALML3P27482 149 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 SH3BGRP55822 239 aaPredicted RBP11.2□□□□□ -0.62
COL4A6-208ENST00000538570 ST5P78524 1137 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 PPP1R7Q15435 360 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 ANKRD13DQ6ZTN6 518 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 LZTFL1Q9NQ48 299 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 RHOXF2BP0C7M4 288 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 RFC1P35251 1148 aaPredicted RBP11.2□□□□□ -0.62
COL4A6-208ENST00000538570 MAP3K9P80192 1104 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 DNAJC21Q5F1R6 531 aaKnown RBP11.2□□□□□ -0.62
COL4A6-208ENST00000538570 KRT79Q5XKE5 535 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 MSANTD4Q8NCY6 345 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 TCEANC2Q96MN5 208 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 RHOXF2Q9BQY4 288 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 ATP6V0A2Q9Y487 856 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 POTEDQ86YR6 584 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 CCDC14Q49A88 953 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 HDXQ7Z353 690 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 JARID2Q92833 1246 aaPredicted RBP11.2□□□□□ -0.62
COL4A6-208ENST00000538570 TRIM7Q9C029 511 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 CFAP157Q5JU67 520 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 CFAP58Q5T655 872 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 SYT10Q6XYQ8 523 aa11.2□□□□□ -0.62
COL4A6-208ENST00000538570 LACTBP83111 547 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-208ENST00000538570 CCDC110Q8TBZ0 833 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 MTUS1Q9ULD2 1270 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 ODF2LQ9ULJ1 636 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 BUB1BO60566 1050 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-208ENST00000538570 INPP5BP32019 993 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 ATP2B3Q16720 1220 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 CCDC25Q86WR0 208 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 FAM169AQ9Y6X4 670 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 TLDC2A0PJX2 215 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 B4GALNT4Q76KP1 1039 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 LMNTD2Q8IXW0 634 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 FAM83GA6ND36 823 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 ZNF853P0CG23 659 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 IFNKQ9P0W0 207 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 IDI1Q13907 227 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 NAA16Q6N069 864 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-208ENST00000538570 HS2ST1Q7LGA3 356 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 PPFIBP2Q8ND30 876 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 RRP36Q96EU6 259 aaKnown RBP11.19□□□□□ -0.62
COL4A6-208ENST00000538570 PPP1R9BQ96SB3 815 aa11.19□□□□□ -0.62
COL4A6-208ENST00000538570 MKRN1Q9UHC7 482 aaKnown RBP11.19□□□□□ -0.62
COL4A6-208ENST00000538570 ADAMTS2O95450 1211 aa11.18□□□□□ -0.62
COL4A6-208ENST00000538570 CALCOCO2Q13137 446 aa11.18□□□□□ -0.62
COL4A6-208ENST00000538570 SMC1BQ8NDV3 1235 aa11.18□□□□□ -0.62
COL4A6-208ENST00000538570 UBLCP1Q8WVY7 318 aaPredicted RBP11.18□□□□□ -0.62
COL4A6-208ENST00000538570 ATP5DP30049 168 aa11.18□□□□□ -0.62
COL4A6-208ENST00000538570 RFC4P35249 363 aa11.18□□□□□ -0.62
COL4A6-208ENST00000538570 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 166.6 ms