RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 MCOLN1Q9GZU1 580 aa17.55■□□□□ 0.4
SYNE1-235ENST00000537033 RNF186Q9NXI6 227 aa17.55■□□□□ 0.4
SYNE1-235ENST00000537033 ARAP2Q8WZ64 1704 aa17.55■□□□□ 0.4
SYNE1-235ENST00000537033 F8W031 263 aaPredicted RBP17.54■□□□□ 0.4
SYNE1-235ENST00000537033 UBE2Q2LH0YL09 131 aa17.54■□□□□ 0.4
SYNE1-235ENST00000537033 NBPF7P0C2Y1 421 aaPredicted RBP17.54■□□□□ 0.4
SYNE1-235ENST00000537033 FKBP1AP62942 108 aaKnown RBP17.54■□□□□ 0.4
SYNE1-235ENST00000537033 MOB2Q70IA6 237 aa17.54■□□□□ 0.4
SYNE1-235ENST00000537033 ARMC9Q7Z3E5 817 aa17.54■□□□□ 0.4
SYNE1-235ENST00000537033 CERS5Q8N5B7 392 aa17.54■□□□□ 0.4
SYNE1-235ENST00000537033 MRPL50Q8N5N7 158 aaKnown RBP17.54■□□□□ 0.4
SYNE1-235ENST00000537033 ZBED3Q96IU2 234 aaPredicted RBP17.54■□□□□ 0.4
SYNE1-235ENST00000537033 CSRNP1Q96S65 589 aa17.54■□□□□ 0.4
SYNE1-235ENST00000537033 UTYO14607 1347 aa17.53■□□□□ 0.4
SYNE1-235ENST00000537033 MROH5Q6ZUA9 1318 aa17.53■□□□□ 0.4
SYNE1-235ENST00000537033 UBE4AQ14139 1066 aa17.53■□□□□ 0.4
SYNE1-235ENST00000537033 MTMR14Q8NCE2 650 aa17.53■□□□□ 0.4
SYNE1-235ENST00000537033 RBM5P52756 815 aaKnown RBP eCLIP17.52■□□□□ 0.4
SYNE1-235ENST00000537033 BICC1Q9H694 974 aaKnown RBP17.52■□□□□ 0.4
SYNE1-235ENST00000537033 JAG2Q9Y219 1238 aa17.52■□□□□ 0.4
SYNE1-235ENST00000537033 PPP2R3BQ9Y5P8 575 aa17.52■□□□□ 0.4
SYNE1-235ENST00000537033 HIBADHP31937 336 aaKnown RBP17.51■□□□□ 0.39
SYNE1-235ENST00000537033 CFAP100Q494V2 611 aa17.51■□□□□ 0.39
SYNE1-235ENST00000537033 VPS37DQ86XT2 251 aa17.51■□□□□ 0.39
SYNE1-235ENST00000537033 SSH1Q8WYL5 1049 aa17.51■□□□□ 0.39
SYNE1-235ENST00000537033 DEFB129Q9H1M3 183 aa17.51■□□□□ 0.39
SYNE1-235ENST00000537033 SPDYE2BA6NHP3 402 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 SPDYE6P0CI01 402 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 GYG1P46976 350 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 SLFN5Q08AF3 891 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 PRKG1Q13976 671 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 RABL6Q3YEC7 729 aaPredicted RBP17.5■□□□□ 0.39
SYNE1-235ENST00000537033 MFSD14BQ5SR56 506 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 KAZALD1Q96I82 304 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 VEZTQ9HBM0 779 aa17.5■□□□□ 0.39
SYNE1-235ENST00000537033 ANGEL1Q9UNK9 670 aaKnown RBP17.5■□□□□ 0.39
SYNE1-235ENST00000537033 FAM205AQ6ZU69 1335 aa17.49■□□□□ 0.39
SYNE1-235ENST00000537033 CLRN2A0PK11 232 aa17.49■□□□□ 0.39
SYNE1-235ENST00000537033 SREBF2Q12772 1141 aa17.49■□□□□ 0.39
SYNE1-235ENST00000537033 METTL24Q5JXM2 366 aa17.49■□□□□ 0.39
SYNE1-235ENST00000537033 TDRD7Q8NHU6 1098 aaKnown RBP17.49■□□□□ 0.39
SYNE1-235ENST00000537033 PUS3Q9BZE2 481 aaKnown RBP17.49■□□□□ 0.39
SYNE1-235ENST00000537033 PPP1R12BO60237 982 aaPredicted RBP17.48■□□□□ 0.39
SYNE1-235ENST00000537033 PTPN12Q05209 780 aaKnown RBP17.48■□□□□ 0.39
SYNE1-235ENST00000537033 MKRN3Q13064 507 aaKnown RBP17.48■□□□□ 0.39
SYNE1-235ENST00000537033 ALDH1L2Q3SY69 923 aa17.48■□□□□ 0.39
SYNE1-235ENST00000537033 SUPT20HL1Q3ZLR7 823 aa17.48■□□□□ 0.39
SYNE1-235ENST00000537033 CAVIN4Q5BKX8 364 aa17.48■□□□□ 0.39
SYNE1-235ENST00000537033 SMC4Q9NTJ3 1288 aa17.48■□□□□ 0.39
SYNE1-235ENST00000537033 TTF2Q9UNY4 1162 aaKnown RBP17.48■□□□□ 0.39
SYNE1-235ENST00000537033 RIPOR2Q9Y4F9 1068 aa17.48■□□□□ 0.39
SYNE1-235ENST00000537033 FRAT2O75474 233 aaPredicted RBP17.47■□□□□ 0.39
SYNE1-235ENST00000537033 TNFAIP1Q13829 316 aa17.47■□□□□ 0.39
SYNE1-235ENST00000537033 ANKRD44Q8N8A2 993 aa17.47■□□□□ 0.39
SYNE1-235ENST00000537033 FAM84BQ96KN1 310 aaPredicted RBP17.47■□□□□ 0.39
SYNE1-235ENST00000537033 PRMT6Q96LA8 375 aaPredicted RBP17.47■□□□□ 0.39
SYNE1-235ENST00000537033 PCDHAC2Q9Y5I4 1007 aa17.47■□□□□ 0.39
SYNE1-235ENST00000537033 LDLRAD1Q5T700 205 aa17.46■□□□□ 0.39
SYNE1-235ENST00000537033 SERPINA10Q9UK55 444 aa17.46■□□□□ 0.39
SYNE1-235ENST00000537033 MYH13Q9UKX3 1938 aa17.46■□□□□ 0.39
SYNE1-235ENST00000537033 SSC5DA1L4H1 1573 aa17.45■□□□□ 0.38
SYNE1-235ENST00000537033 CT47B1P0C2W7 299 aaPredicted RBP17.45■□□□□ 0.38
SYNE1-235ENST00000537033 TM4SF4P48230 202 aa17.45■□□□□ 0.38
SYNE1-235ENST00000537033 LRRC24Q50LG9 513 aa17.45■□□□□ 0.38
SYNE1-235ENST00000537033 CTU1Q7Z7A3 348 aaKnown RBP17.45■□□□□ 0.38
SYNE1-235ENST00000537033 TBC1D22AQ8WUA7 517 aa17.45■□□□□ 0.38
SYNE1-235ENST00000537033 SLC10A4Q96EP9 437 aa17.45■□□□□ 0.38
SYNE1-235ENST00000537033 USP44Q9H0E7 712 aa17.45■□□□□ 0.38
SYNE1-235ENST00000537033 PDE8BO95263 885 aa17.44■□□□□ 0.38
SYNE1-235ENST00000537033 IREB2P48200 963 aaKnown RBP17.44■□□□□ 0.38
SYNE1-235ENST00000537033 MLLT1Q03111 559 aaPredicted RBP17.44■□□□□ 0.38
SYNE1-235ENST00000537033 CHAF1AQ13111 956 aaPredicted RBP17.44■□□□□ 0.38
SYNE1-235ENST00000537033 MAP3K11Q16584 847 aa17.44■□□□□ 0.38
SYNE1-235ENST00000537033 SPDYE2Q495Y8 402 aa17.44■□□□□ 0.38
SYNE1-235ENST00000537033 SPRYD7Q5W111 196 aa17.44■□□□□ 0.38
SYNE1-235ENST00000537033 CDCA7LQ96GN5 454 aa17.44■□□□□ 0.38
SYNE1-235ENST00000537033 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.44■□□□□ 0.38
SYNE1-235ENST00000537033 LAMB1P07942 1786 aa17.43■□□□□ 0.38
SYNE1-235ENST00000537033 UNCXA6NJT0 531 aa17.43■□□□□ 0.38
SYNE1-235ENST00000537033 TBC1D8O95759 1140 aa17.43■□□□□ 0.38
SYNE1-235ENST00000537033 IFIT1P09914 478 aaKnown RBP17.43■□□□□ 0.38
SYNE1-235ENST00000537033 RASA3Q14644 834 aa17.43■□□□□ 0.38
SYNE1-235ENST00000537033 PUM3Q15397 648 aaKnown RBP17.43■□□□□ 0.38
SYNE1-235ENST00000537033 FBXO33Q7Z6M2 555 aa17.43■□□□□ 0.38
SYNE1-235ENST00000537033 FZD1Q9UP38 647 aa17.43■□□□□ 0.38
SYNE1-235ENST00000537033 IQSEC3Q9UPP2 1182 aaPredicted RBP17.43■□□□□ 0.38
SYNE1-235ENST00000537033 MANSC4A6NHS7 340 aaPredicted RBP17.42■□□□□ 0.38
SYNE1-235ENST00000537033 ALDH1A1P00352 501 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 ZBTB48P10074 688 aaPredicted RBP17.42■□□□□ 0.38
SYNE1-235ENST00000537033 CRKP46108 304 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 TNNI2P48788 182 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 NBPF12Q5TAG4 269 aaPredicted RBP17.42■□□□□ 0.38
SYNE1-235ENST00000537033 DZIP1LQ8IYY4 767 aaKnown RBP17.42■□□□□ 0.38
SYNE1-235ENST00000537033 VGLL2Q8N8G2 317 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 KLHDC4Q8TBB5 520 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 ZNF70Q9UC06 446 aaPredicted RBP17.42■□□□□ 0.38
SYNE1-235ENST00000537033 OTOFQ9HC10 1997 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 AOX1Q06278 1338 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 KIF16BQ96L93 1317 aa17.42■□□□□ 0.38
SYNE1-235ENST00000537033 UBTFL1P0CB47 393 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms