RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 PDGFAP04085 211 aa9.58□□□□□ -0.88
SYNE1-232ENST00000535081 HGSNATQ68CP4 663 aa9.58□□□□□ -0.88
SYNE1-232ENST00000535081 TMEM102Q8N9M5 508 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-232ENST00000535081 PBXIP1Q96AQ6 731 aa9.58□□□□□ -0.88
SYNE1-232ENST00000535081 CHRDQ9H2X0 955 aa9.58□□□□□ -0.88
SYNE1-232ENST00000535081 GGNBP2Q9H3C7 697 aa9.58□□□□□ -0.88
SYNE1-232ENST00000535081 A6NHS1 94 aa9.57□□□□□ -0.88
SYNE1-232ENST00000535081 MAP4P27816 1152 aaKnown RBP9.57□□□□□ -0.88
SYNE1-232ENST00000535081 C8orf34Q49A92 452 aa9.57□□□□□ -0.88
SYNE1-232ENST00000535081 SGO2Q562F6 1265 aa9.57□□□□□ -0.88
SYNE1-232ENST00000535081 TTC16Q8NEE8 873 aa9.57□□□□□ -0.88
SYNE1-232ENST00000535081 PMEPA1Q969W9 287 aa9.57□□□□□ -0.88
SYNE1-232ENST00000535081 PIM2Q9P1W9 311 aa9.57□□□□□ -0.88
SYNE1-232ENST00000535081 KRTAP4-8A0A0G2JLE6 195 aa9.56□□□□□ -0.88
SYNE1-232ENST00000535081 HOXA10P31260 410 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-232ENST00000535081 NOM1Q5C9Z4 860 aaKnown RBP9.56□□□□□ -0.88
SYNE1-232ENST00000535081 MZF1P28698 734 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-232ENST00000535081 NUTM2GQ5VZR2 741 aa9.55□□□□□ -0.88
SYNE1-232ENST00000535081 GIMAP7Q8NHV1 300 aa9.55□□□□□ -0.88
SYNE1-232ENST00000535081 BSNDQ8WZ55 320 aa9.55□□□□□ -0.88
SYNE1-232ENST00000535081 OSMRQ99650 979 aa9.55□□□□□ -0.88
SYNE1-232ENST00000535081 TMPRSS13Q9BYE2 586 aa9.55□□□□□ -0.88
SYNE1-232ENST00000535081 ADGRE2Q9UHX3 823 aa9.55□□□□□ -0.88
SYNE1-232ENST00000535081 SOX1O00570 391 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-232ENST00000535081 RXRBP28702 533 aa9.54□□□□□ -0.88
SYNE1-232ENST00000535081 IKBKEQ14164 716 aa9.54□□□□□ -0.88
SYNE1-232ENST00000535081 NXPE3Q969Y0 559 aa9.54□□□□□ -0.88
SYNE1-232ENST00000535081 ZKSCAN3Q9BRR0 538 aa9.54□□□□□ -0.88
SYNE1-232ENST00000535081 USP26Q9BXU7 913 aa9.54□□□□□ -0.88
SYNE1-232ENST00000535081 ATG3Q9NT62 314 aa9.54□□□□□ -0.88
SYNE1-232ENST00000535081 TIAF1O95411 115 aa9.53□□□□□ -0.88
SYNE1-232ENST00000535081 EIF1AXP47813 144 aaKnown RBP9.53□□□□□ -0.88
SYNE1-232ENST00000535081 VN1R5Q7Z5H4 357 aa9.53□□□□□ -0.88
SYNE1-232ENST00000535081 FBXL6Q8N531 539 aa9.53□□□□□ -0.88
SYNE1-232ENST00000535081 C12orf50Q8NA57 414 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-232ENST00000535081 SMG8Q8ND04 991 aaKnown RBP9.53□□□□□ -0.88
SYNE1-232ENST00000535081 SUGCTQ9HAC7 445 aa9.53□□□□□ -0.88
SYNE1-232ENST00000535081 CYP4F12Q9HCS2 524 aa9.53□□□□□ -0.88
SYNE1-232ENST00000535081 LEMD3Q9Y2U8 911 aa9.53□□□□□ -0.88
SYNE1-232ENST00000535081 LOC100289279A0A1B0GTE1 492 aa9.52□□□□□ -0.89
SYNE1-232ENST00000535081 F13BP05160 661 aa9.52□□□□□ -0.89
SYNE1-232ENST00000535081 MPSTP25325 297 aa9.52□□□□□ -0.89
SYNE1-232ENST00000535081 CPSF6Q16630 551 aaKnown RBP eCLIP9.52□□□□□ -0.89
SYNE1-232ENST00000535081 OSBPL1AQ9BXW6 950 aa9.52□□□□□ -0.89
SYNE1-232ENST00000535081 ANGEL1Q9UNK9 670 aaKnown RBP9.52□□□□□ -0.89
SYNE1-232ENST00000535081 EREGO14944 169 aa9.51□□□□□ -0.89
SYNE1-232ENST00000535081 EDN3P14138 238 aa9.51□□□□□ -0.89
SYNE1-232ENST00000535081 MSMPQ1L6U9 139 aa9.51□□□□□ -0.89
SYNE1-232ENST00000535081 SOX17Q9H6I2 414 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-232ENST00000535081 PHACTR2O75167 634 aa9.5□□□□□ -0.89
SYNE1-232ENST00000535081 FOSL1P15407 271 aa9.5□□□□□ -0.89
SYNE1-232ENST00000535081 ABI1Q8IZP0 508 aa9.5□□□□□ -0.89
SYNE1-232ENST00000535081 POLIQ9UNA4 740 aa9.5□□□□□ -0.89
SYNE1-232ENST00000535081 FAM95CA0A1B0GW59 222 aa9.49□□□□□ -0.89
SYNE1-232ENST00000535081 TNFRSF21O75509 655 aa9.49□□□□□ -0.89
SYNE1-232ENST00000535081 ASAP3Q8TDY4 903 aa9.49□□□□□ -0.89
SYNE1-232ENST00000535081 SNX29Q8TEQ0 813 aa9.49□□□□□ -0.89
SYNE1-232ENST00000535081 CCDC97Q96F63 343 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-232ENST00000535081 BHLHE41Q9C0J9 482 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-232ENST00000535081 DLGAP3O95886 979 aa9.48□□□□□ -0.89
SYNE1-232ENST00000535081 ALKBH2Q6NS38 261 aa9.48□□□□□ -0.89
SYNE1-232ENST00000535081 PAOXQ6QHF9 649 aa9.48□□□□□ -0.89
SYNE1-232ENST00000535081 GTF3C2Q8WUA4 911 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-232ENST00000535081 ESRRAP11474 423 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-232ENST00000535081 USP11P51784 963 aa9.47□□□□□ -0.89
SYNE1-232ENST00000535081 NFKBIBQ15653 356 aa9.47□□□□□ -0.89
SYNE1-232ENST00000535081 EXOSC6Q5RKV6 272 aaKnown RBP9.47□□□□□ -0.89
SYNE1-232ENST00000535081 FBLIM1Q8WUP2 373 aa9.47□□□□□ -0.89
SYNE1-232ENST00000535081 METTL22Q9BUU2 404 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-232ENST00000535081 CCDC39Q9UFE4 941 aa9.47□□□□□ -0.89
SYNE1-232ENST00000535081 FOXD3Q9UJU5 478 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-232ENST00000535081 DRD2P14416 443 aa9.46□□□□□ -0.9
SYNE1-232ENST00000535081 MTMR3Q13615 1198 aa9.46□□□□□ -0.9
SYNE1-232ENST00000535081 CDPF1Q6NVV7 123 aa9.46□□□□□ -0.9
SYNE1-232ENST00000535081 VSIG10LQ86VR7 867 aa9.46□□□□□ -0.9
SYNE1-232ENST00000535081 SHISA5Q8N114 240 aa9.46□□□□□ -0.9
SYNE1-232ENST00000535081 C2CD4AQ8NCU7 369 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-232ENST00000535081 PRNPP04156 253 aa9.45□□□□□ -0.9
SYNE1-232ENST00000535081 GSTM4Q03013 218 aa9.45□□□□□ -0.9
SYNE1-232ENST00000535081 EHHADHQ08426 723 aa9.45□□□□□ -0.9
SYNE1-232ENST00000535081 LATS2Q9NRM7 1088 aa9.45□□□□□ -0.9
SYNE1-232ENST00000535081 AAMPQ13685 434 aa9.44□□□□□ -0.9
SYNE1-232ENST00000535081 PEAR1Q5VY43 1037 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-232ENST00000535081 FBXL18Q96ME1 805 aa9.44□□□□□ -0.9
SYNE1-232ENST00000535081 YIPF2Q9BWQ6 316 aa9.44□□□□□ -0.9
SYNE1-232ENST00000535081 SERPINA10Q9UK55 444 aa9.44□□□□□ -0.9
SYNE1-232ENST00000535081 AMOTL2Q9Y2J4 779 aa9.44□□□□□ -0.9
SYNE1-232ENST00000535081 USP5P45974 858 aa9.43□□□□□ -0.9
SYNE1-232ENST00000535081 SOX4Q06945 474 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-232ENST00000535081 ZAR1Q86SH2 424 aa9.43□□□□□ -0.9
SYNE1-232ENST00000535081 TBC1D32Q96NH3 1257 aa9.43□□□□□ -0.9
SYNE1-232ENST00000535081 PRKAG2Q9UGJ0 569 aa9.43□□□□□ -0.9
SYNE1-232ENST00000535081 METTL12A8MUP2 240 aa9.42□□□□□ -0.9
SYNE1-232ENST00000535081 CYP26A1O43174 497 aa9.42□□□□□ -0.9
SYNE1-232ENST00000535081 EIF4EBP3O60516 100 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-232ENST00000535081 NPR3P17342 541 aa9.42□□□□□ -0.9
SYNE1-232ENST00000535081 ADMP35318 185 aa9.42□□□□□ -0.9
SYNE1-232ENST00000535081 NFXL1Q6ZNB6 911 aa9.42□□□□□ -0.9
SYNE1-232ENST00000535081 EZH1Q92800 747 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-232ENST00000535081 NRSN2Q9GZP1 204 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms