RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 JAG2Q9Y219 1238 aa18.56■□□□□ 0.56
VPS28-215ENST00000531924 PTPRCP08575 1304 aa18.55■□□□□ 0.56
VPS28-215ENST00000531924 ZNF521Q96K83 1311 aa18.55■□□□□ 0.56
VPS28-215ENST00000531924 NBPF7P0C2Y1 421 aaPredicted RBP18.55■□□□□ 0.56
VPS28-215ENST00000531924 FKBP1AP62942 108 aaKnown RBP18.55■□□□□ 0.56
VPS28-215ENST00000531924 VPS37DQ86XT2 251 aa18.55■□□□□ 0.56
VPS28-215ENST00000531924 CERS5Q8N5B7 392 aa18.55■□□□□ 0.56
VPS28-215ENST00000531924 MRPL50Q8N5N7 158 aaKnown RBP18.55■□□□□ 0.56
VPS28-215ENST00000531924 IRS2Q9Y4H2 1338 aa18.54■□□□□ 0.56
VPS28-215ENST00000531924 HIBADHP31937 336 aaKnown RBP18.54■□□□□ 0.56
VPS28-215ENST00000531924 UBE4AQ14139 1066 aa18.54■□□□□ 0.56
VPS28-215ENST00000531924 CFAP100Q494V2 611 aa18.54■□□□□ 0.56
VPS28-215ENST00000531924 DEFB129Q9H1M3 183 aa18.54■□□□□ 0.56
VPS28-215ENST00000531924 MROH5Q6ZUA9 1318 aa18.53■□□□□ 0.56
VPS28-215ENST00000531924 MKRN3Q13064 507 aaKnown RBP18.53■□□□□ 0.56
VPS28-215ENST00000531924 MTMR14Q8NCE2 650 aa18.53■□□□□ 0.56
VPS28-215ENST00000531924 ZBED3Q96IU2 234 aaPredicted RBP18.53■□□□□ 0.56
VPS28-215ENST00000531924 BICC1Q9H694 974 aaKnown RBP18.53■□□□□ 0.56
VPS28-215ENST00000531924 VEZTQ9HBM0 779 aa18.53■□□□□ 0.56
VPS28-215ENST00000531924 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.53■□□□□ 0.56
VPS28-215ENST00000531924 ANGEL1Q9UNK9 670 aaKnown RBP18.53■□□□□ 0.56
VPS28-215ENST00000531924 CLRN2A0PK11 232 aa18.52■□□□□ 0.56
VPS28-215ENST00000531924 PPP1R12BO60237 982 aaPredicted RBP18.52■□□□□ 0.56
VPS28-215ENST00000531924 FRAT2O75474 233 aaPredicted RBP18.52■□□□□ 0.56
VPS28-215ENST00000531924 GYG1P46976 350 aa18.52■□□□□ 0.56
VPS28-215ENST00000531924 SUPT20HL1Q3ZLR7 823 aa18.52■□□□□ 0.56
VPS28-215ENST00000531924 METTL24Q5JXM2 366 aa18.52■□□□□ 0.56
VPS28-215ENST00000531924 PUS3Q9BZE2 481 aaKnown RBP18.52■□□□□ 0.56
VPS28-215ENST00000531924 PPP2R3BQ9Y5P8 575 aa18.52■□□□□ 0.56
VPS28-215ENST00000531924 UTYO14607 1347 aa18.51■□□□□ 0.55
VPS28-215ENST00000531924 SPDYE2BA6NHP3 402 aa18.51■□□□□ 0.55
VPS28-215ENST00000531924 SPDYE6P0CI01 402 aa18.51■□□□□ 0.55
VPS28-215ENST00000531924 PTPN12Q05209 780 aaKnown RBP18.51■□□□□ 0.55
VPS28-215ENST00000531924 SREBF2Q12772 1141 aa18.51■□□□□ 0.55
VPS28-215ENST00000531924 CAVIN4Q5BKX8 364 aa18.51■□□□□ 0.55
VPS28-215ENST00000531924 MFSD14BQ5SR56 506 aa18.51■□□□□ 0.55
VPS28-215ENST00000531924 SSH1Q8WYL5 1049 aa18.51■□□□□ 0.55
VPS28-215ENST00000531924 CASP8AP2Q9UKL3 1982 aa18.5■□□□□ 0.55
VPS28-215ENST00000531924 SLFN5Q08AF3 891 aa18.5■□□□□ 0.55
VPS28-215ENST00000531924 TDRD7Q8NHU6 1098 aaKnown RBP18.5■□□□□ 0.55
VPS28-215ENST00000531924 SLC10A4Q96EP9 437 aa18.5■□□□□ 0.55
VPS28-215ENST00000531924 KAZALD1Q96I82 304 aa18.5■□□□□ 0.55
VPS28-215ENST00000531924 PRMT6Q96LA8 375 aaPredicted RBP18.5■□□□□ 0.55
VPS28-215ENST00000531924 SMC4Q9NTJ3 1288 aa18.5■□□□□ 0.55
VPS28-215ENST00000531924 TTF2Q9UNY4 1162 aaKnown RBP18.5■□□□□ 0.55
VPS28-215ENST00000531924 RIPOR2Q9Y4F9 1068 aa18.5■□□□□ 0.55
VPS28-215ENST00000531924 COL1A1P02452 1464 aaPredicted RBP18.5■□□□□ 0.55
VPS28-215ENST00000531924 FAM205AQ6ZU69 1335 aa18.49■□□□□ 0.55
VPS28-215ENST00000531924 FAM84BQ96KN1 310 aaPredicted RBP18.49■□□□□ 0.55
VPS28-215ENST00000531924 PCDHAC2Q9Y5I4 1007 aa18.49■□□□□ 0.55
VPS28-215ENST00000531924 MLLT1Q03111 559 aaPredicted RBP18.48■□□□□ 0.55
VPS28-215ENST00000531924 CHAF1AQ13111 956 aaPredicted RBP18.48■□□□□ 0.55
VPS28-215ENST00000531924 TNFAIP1Q13829 316 aa18.48■□□□□ 0.55
VPS28-215ENST00000531924 ALDH1L2Q3SY69 923 aa18.48■□□□□ 0.55
VPS28-215ENST00000531924 RABL6Q3YEC7 729 aaPredicted RBP18.48■□□□□ 0.55
VPS28-215ENST00000531924 CTU1Q7Z7A3 348 aaKnown RBP18.48■□□□□ 0.55
VPS28-215ENST00000531924 TBC1D8O95759 1140 aa18.47■□□□□ 0.55
VPS28-215ENST00000531924 TM4SF4P48230 202 aa18.47■□□□□ 0.55
VPS28-215ENST00000531924 LRRC24Q50LG9 513 aa18.47■□□□□ 0.55
VPS28-215ENST00000531924 LDLRAD1Q5T700 205 aa18.47■□□□□ 0.55
VPS28-215ENST00000531924 ANKRD44Q8N8A2 993 aa18.47■□□□□ 0.55
VPS28-215ENST00000531924 SERPINA10Q9UK55 444 aa18.47■□□□□ 0.55
VPS28-215ENST00000531924 IREB2P48200 963 aaKnown RBP18.46■□□□□ 0.55
VPS28-215ENST00000531924 RASA3Q14644 834 aa18.46■□□□□ 0.55
VPS28-215ENST00000531924 SPRYD7Q5W111 196 aa18.46■□□□□ 0.55
VPS28-215ENST00000531924 TBC1D22AQ8WUA7 517 aa18.46■□□□□ 0.55
VPS28-215ENST00000531924 USP44Q9H0E7 712 aa18.46■□□□□ 0.55
VPS28-215ENST00000531924 FZD1Q9UP38 647 aa18.46■□□□□ 0.55
VPS28-215ENST00000531924 IQSEC3Q9UPP2 1182 aaPredicted RBP18.46■□□□□ 0.55
VPS28-215ENST00000531924 ZNF646O15015 1829 aaPredicted RBP18.46■□□□□ 0.55
VPS28-215ENST00000531924 AKAP11Q9UKA4 1901 aa18.45■□□□□ 0.54
VPS28-215ENST00000531924 PDE8BO95263 885 aa18.45■□□□□ 0.54
VPS28-215ENST00000531924 CDCA7LQ96GN5 454 aa18.45■□□□□ 0.54
VPS28-215ENST00000531924 MANSC4A6NHS7 340 aaPredicted RBP18.44■□□□□ 0.54
VPS28-215ENST00000531924 ALDH1A1P00352 501 aa18.44■□□□□ 0.54
VPS28-215ENST00000531924 IFIT1P09914 478 aaKnown RBP18.44■□□□□ 0.54
VPS28-215ENST00000531924 CRKP46108 304 aa18.44■□□□□ 0.54
VPS28-215ENST00000531924 TNNI2P48788 182 aa18.44■□□□□ 0.54
VPS28-215ENST00000531924 INHBEP58166 350 aa18.44■□□□□ 0.54
VPS28-215ENST00000531924 NBPF12Q5TAG4 269 aaPredicted RBP18.44■□□□□ 0.54
VPS28-215ENST00000531924 FBXO33Q7Z6M2 555 aa18.44■□□□□ 0.54
VPS28-215ENST00000531924 DZIP1LQ8IYY4 767 aaKnown RBP18.44■□□□□ 0.54
VPS28-215ENST00000531924 KLHDC4Q8TBB5 520 aa18.44■□□□□ 0.54
VPS28-215ENST00000531924 TDRD3Q9H7E2 651 aaKnown RBP18.44■□□□□ 0.54
VPS28-215ENST00000531924 ZNF70Q9UC06 446 aaPredicted RBP18.44■□□□□ 0.54
VPS28-215ENST00000531924 UNCXA6NJT0 531 aa18.43■□□□□ 0.54
VPS28-215ENST00000531924 PUM3Q15397 648 aaKnown RBP18.43■□□□□ 0.54
VPS28-215ENST00000531924 MAP3K11Q16584 847 aa18.43■□□□□ 0.54
VPS28-215ENST00000531924 SPDYE2Q495Y8 402 aa18.43■□□□□ 0.54
VPS28-215ENST00000531924 ZNF296Q8WUU4 475 aaPredicted RBP18.43■□□□□ 0.54
VPS28-215ENST00000531924 HDAC5Q9UQL6 1122 aa18.43■□□□□ 0.54
VPS28-215ENST00000531924 TCP10L2B9ZVM9 353 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 GPR25O00155 361 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 CT47B1P0C2W7 299 aaPredicted RBP18.42■□□□□ 0.54
VPS28-215ENST00000531924 UBTFL1P0CB47 393 aaPredicted RBP18.42■□□□□ 0.54
VPS28-215ENST00000531924 ZBTB48P10074 688 aaPredicted RBP18.42■□□□□ 0.54
VPS28-215ENST00000531924 RGS19P49795 217 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 PKN2Q16513 984 aaKnown RBP18.42■□□□□ 0.54
VPS28-215ENST00000531924 ANKRD13AQ8IZ07 590 aa18.42■□□□□ 0.54
VPS28-215ENST00000531924 TEKT1Q969V4 418 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms