RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SALL2Q9Y467 1007 aaPredicted RBP30.01■■■□□ 2.39
CPSF1-202ENST00000527827 PCDHAC2Q9Y5I4 1007 aa30.01■■■□□ 2.39
CPSF1-202ENST00000527827 SREBF2Q12772 1141 aa30■■■□□ 2.39
CPSF1-202ENST00000527827 PKN2Q16513 984 aaKnown RBP30■■■□□ 2.39
CPSF1-202ENST00000527827 DEFB129Q9H1M3 183 aa30■■■□□ 2.39
CPSF1-202ENST00000527827 IL1R1P14778 569 aa29.99■■■□□ 2.39
CPSF1-202ENST00000527827 EPHA10Q5JZY3 1008 aa29.99■■■□□ 2.39
CPSF1-202ENST00000527827 SPRYD7Q5W111 196 aa29.99■■■□□ 2.39
CPSF1-202ENST00000527827 MRS2Q9HD23 443 aa29.99■■■□□ 2.39
CPSF1-202ENST00000527827 CHMP3Q9Y3E7 222 aa29.99■■■□□ 2.39
CPSF1-202ENST00000527827 CFHR5Q9BXR6 569 aa29.98■■■□□ 2.39
CPSF1-202ENST00000527827 R3HDMLQ9H3Y0 253 aa29.98■■■□□ 2.39
CPSF1-202ENST00000527827 SSC5DA1L4H1 1573 aa29.98■■■□□ 2.39
CPSF1-202ENST00000527827 LMBR1LQ6UX01 489 aa29.97■■■□□ 2.39
CPSF1-202ENST00000527827 ZNF804AQ7Z570 1209 aa29.97■■■□□ 2.39
CPSF1-202ENST00000527827 MAP3K11Q16584 847 aa29.96■■■□□ 2.39
CPSF1-202ENST00000527827 ZNF594Q96JF6 807 aaPredicted RBP29.96■■■□□ 2.39
CPSF1-202ENST00000527827 SPINK5Q9NQ38 1064 aaPredicted RBP29.96■■■□□ 2.39
CPSF1-202ENST00000527827 F8W031 263 aaPredicted RBP29.95■■■□□ 2.39
CPSF1-202ENST00000527827 FKBP1AP62942 108 aaKnown RBP29.95■■■□□ 2.39
CPSF1-202ENST00000527827 CFAP100Q494V2 611 aa29.95■■■□□ 2.39
CPSF1-202ENST00000527827 LAMB1P07942 1786 aa29.95■■■□□ 2.38
CPSF1-202ENST00000527827 JAG2Q9Y219 1238 aa29.94■■■□□ 2.38
CPSF1-202ENST00000527827 PPP2R3BQ9Y5P8 575 aa29.94■■■□□ 2.38
CPSF1-202ENST00000527827 AOX1Q06278 1338 aa29.94■■■□□ 2.38
CPSF1-202ENST00000527827 SPDYE2BA6NHP3 402 aa29.93■■■□□ 2.38
CPSF1-202ENST00000527827 GRM8O00222 908 aa29.93■■■□□ 2.38
CPSF1-202ENST00000527827 SPDYE6P0CI01 402 aa29.93■■■□□ 2.38
CPSF1-202ENST00000527827 LDHAL6AQ6ZMR3 332 aa29.93■■■□□ 2.38
CPSF1-202ENST00000527827 PRMT6Q96LA8 375 aaPredicted RBP29.93■■■□□ 2.38
CPSF1-202ENST00000527827 CLRN2A0PK11 232 aa29.92■■■□□ 2.38
CPSF1-202ENST00000527827 FKTNO75072 461 aa29.92■■■□□ 2.38
CPSF1-202ENST00000527827 CCDC57Q2TAC2 916 aa29.92■■■□□ 2.38
CPSF1-202ENST00000527827 SLC10A4Q96EP9 437 aa29.92■■■□□ 2.38
CPSF1-202ENST00000527827 CLMNQ96JQ2 1002 aa29.92■■■□□ 2.38
CPSF1-202ENST00000527827 PLIN1O60240 522 aa29.91■■■□□ 2.38
CPSF1-202ENST00000527827 FBXO46Q6PJ61 603 aaPredicted RBP29.91■■■□□ 2.38
CPSF1-202ENST00000527827 PPP1R12BO60237 982 aaPredicted RBP29.9■■■□□ 2.38
CPSF1-202ENST00000527827 WNK4Q96J92 1243 aa29.9■■■□□ 2.38
CPSF1-202ENST00000527827 MANSC4A6NHS7 340 aaPredicted RBP29.89■■■□□ 2.38
CPSF1-202ENST00000527827 MYO1BO43795 1136 aa29.89■■■□□ 2.38
CPSF1-202ENST00000527827 ALDH1A1P00352 501 aa29.89■■■□□ 2.38
CPSF1-202ENST00000527827 TAF7LQ5H9L4 462 aa29.89■■■□□ 2.38
CPSF1-202ENST00000527827 CNNM1Q9NRU3 951 aa29.89■■■□□ 2.38
CPSF1-202ENST00000527827 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.89■■■□□ 2.38
CPSF1-202ENST00000527827 FAM205AQ6ZU69 1335 aa29.89■■■□□ 2.38
CPSF1-202ENST00000527827 ZBTB48P10074 688 aaPredicted RBP29.88■■■□□ 2.37
CPSF1-202ENST00000527827 INHBEP58166 350 aa29.88■■■□□ 2.37
CPSF1-202ENST00000527827 NBPF12Q5TAG4 269 aaPredicted RBP29.88■■■□□ 2.37
CPSF1-202ENST00000527827 IFNL1Q8IU54 200 aa29.88■■■□□ 2.37
CPSF1-202ENST00000527827 VEZTQ9HBM0 779 aa29.88■■■□□ 2.37
CPSF1-202ENST00000527827 SUPT20HL1Q3ZLR7 823 aa29.87■■■□□ 2.37
CPSF1-202ENST00000527827 C9orf78Q9NZ63 289 aaPredicted RBP29.87■■■□□ 2.37
CPSF1-202ENST00000527827 UNCXA6NJT0 531 aa29.86■■■□□ 2.37
CPSF1-202ENST00000527827 ALDH1L1O75891 902 aa29.86■■■□□ 2.37
CPSF1-202ENST00000527827 TDRD7Q8NHU6 1098 aaKnown RBP29.86■■■□□ 2.37
CPSF1-202ENST00000527827 IGF2BP3O00425 579 aaKnown RBP eCLIP29.85■■■□□ 2.37
CPSF1-202ENST00000527827 USP2O75604 605 aaPredicted RBP29.85■■■□□ 2.37
CPSF1-202ENST00000527827 RBM5P52756 815 aaKnown RBP eCLIP29.85■■■□□ 2.372e-6■□□□□ 10.3
CPSF1-202ENST00000527827 RASA3Q14644 834 aa29.85■■■□□ 2.37
CPSF1-202ENST00000527827 ARAP2Q8WZ64 1704 aa29.85■■■□□ 2.37
CPSF1-202ENST00000527827 GYG1P46976 350 aa29.84■■■□□ 2.37
CPSF1-202ENST00000527827 UBE4AQ14139 1066 aa29.84■■■□□ 2.37
CPSF1-202ENST00000527827 KAZALD1Q96I82 304 aa29.84■■■□□ 2.37
CPSF1-202ENST00000527827 PUS3Q9BZE2 481 aaKnown RBP29.84■■■□□ 2.37
CPSF1-202ENST00000527827 OTOFQ9HC10 1997 aa29.84■■■□□ 2.37
CPSF1-202ENST00000527827 ANP32CO43423 234 aa29.83■■■□□ 2.37
CPSF1-202ENST00000527827 GJA5P36382 358 aa29.83■■■□□ 2.37
CPSF1-202ENST00000527827 MFSD14BQ5SR56 506 aa29.83■■■□□ 2.37
CPSF1-202ENST00000527827 SLC4A10Q6U841 1118 aa29.83■■■□□ 2.37
CPSF1-202ENST00000527827 SUCLG2Q96I99 432 aa29.83■■■□□ 2.37
CPSF1-202ENST00000527827 FAM84BQ96KN1 310 aaPredicted RBP29.83■■■□□ 2.37
CPSF1-202ENST00000527827 SRCIN1Q9C0H9 1055 aa29.83■■■□□ 2.37
CPSF1-202ENST00000527827 IREB2P48200 963 aaKnown RBP29.82■■■□□ 2.36
CPSF1-202ENST00000527827 HIBADHP31937 336 aaKnown RBP29.81■■■□□ 2.36
CPSF1-202ENST00000527827 SPDYE2Q495Y8 402 aa29.81■■■□□ 2.36
CPSF1-202ENST00000527827 ZNF70Q9UC06 446 aaPredicted RBP29.81■■■□□ 2.36
CPSF1-202ENST00000527827 SERPINA10Q9UK55 444 aa29.81■■■□□ 2.36
CPSF1-202ENST00000527827 TTF2Q9UNY4 1162 aaKnown RBP29.81■■■□□ 2.36
CPSF1-202ENST00000527827 PRPF38BQ5VTL8 546 aaKnown RBP29.8■■■□□ 2.36
CPSF1-202ENST00000527827 ANKRD13AQ8IZ07 590 aa29.8■■■□□ 2.36
CPSF1-202ENST00000527827 NBPF7P0C2Y1 421 aaPredicted RBP29.79■■■□□ 2.36
CPSF1-202ENST00000527827 TDRD3Q9H7E2 651 aaKnown RBP29.79■■■□□ 2.36
CPSF1-202ENST00000527827 RIPOR2Q9Y4F9 1068 aa29.79■■■□□ 2.36
CPSF1-202ENST00000527827 TNFAIP1Q13829 316 aa29.78■■■□□ 2.36
CPSF1-202ENST00000527827 OTOP1Q7RTM1 612 aa29.78■■■□□ 2.36
CPSF1-202ENST00000527827 TRIM17Q9Y577 477 aa29.78■■■□□ 2.36
CPSF1-202ENST00000527827 UTYO14607 1347 aa29.77■■■□□ 2.36
CPSF1-202ENST00000527827 HTTP42858 3142 aa29.77■■■□□ 2.36
CPSF1-202ENST00000527827 DZIP1LQ8IYY4 767 aaKnown RBP29.77■■■□□ 2.36
CPSF1-202ENST00000527827 TEPSINQ96N21 525 aa29.77■■■□□ 2.36
CPSF1-202ENST00000527827 TESPA1A2RU30 521 aaPredicted RBP29.76■■■□□ 2.35
CPSF1-202ENST00000527827 CDAN1Q8IWY9 1227 aa29.76■■■□□ 2.35
CPSF1-202ENST00000527827 PTPN18Q99952 460 aa29.76■■■□□ 2.35
CPSF1-202ENST00000527827 MROH5Q6ZUA9 1318 aa29.75■■■□□ 2.35
CPSF1-202ENST00000527827 CRKP46108 304 aa29.75■■■□□ 2.35
CPSF1-202ENST00000527827 CRHR2Q13324 411 aa29.75■■■□□ 2.35
CPSF1-202ENST00000527827 GRIK5Q16478 980 aa29.75■■■□□ 2.35
CPSF1-202ENST00000527827 FBXO33Q7Z6M2 555 aa29.75■■■□□ 2.35
CPSF1-202ENST00000527827 RABL6Q3YEC7 729 aaPredicted RBP29.74■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms