RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 KIAA2012Q0VF49 1180 aa9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 TRIM28Q13263 835 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 ALDH1L2Q3SY69 923 aa9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 SUPT20HQ8NEM7 779 aa9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 BSDC1Q9NW68 430 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 IDH1O75874 414 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 PHKA1P46020 1223 aa9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 ANKRD44Q8N8A2 993 aa9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 ZBTB9Q96C00 473 aa9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 EDC3Q96F86 508 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 NUP98P52948 1817 aa9.62□□□□□ -0.87
LIMCH1-219ENST00000514096 IQCA1LA6NCM1 817 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 IGSF3O75054 1194 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 TNIP1Q15025 636 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 GRIK5Q16478 980 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 SULF1Q8IWU6 871 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 EXOC6Q8TAG9 804 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 TDRD3Q9H7E2 651 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 CD209Q9NNX6 404 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 USP17L3A6NCW0 530 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 USP17L4A6NCW7 530 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 USP17L8P0C7I0 530 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 MIGA2Q7L4E1 593 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 USP17L1Q7RTZ2 530 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 ZNF804AQ7Z570 1209 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 AACSQ86V21 672 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 DCPSQ96C86 337 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 ISY1Q9ULR0 285 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 AFDNP55196 1824 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 ATP2B4P23634 1241 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 KIF4BQ2VIQ3 1234 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 LRP2BPQ9P2M1 347 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 HDAC5Q9UQL6 1122 aa9.61□□□□□ -0.87
LIMCH1-219ENST00000514096 EYA2O00167 538 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 PTMSP20962 102 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 SLFNL1Q499Z3 407 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 CYP4F22Q6NT55 531 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 CEP290O15078 2479 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 COL5A3P25940 1745 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 A0A1B0GUL7 405 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 MYCNP04198 464 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 PTPN12Q05209 780 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 DLGAP5Q15398 846 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 TLR7Q9NYK1 1049 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 PDZRN3Q9UPQ7 1066 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 SLC5A1P13866 664 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 PRDX5P30044 214 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 CASP7P55210 303 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 SCARF1Q14162 830 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 TTC39AQ5SRH9 613 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 CC2D2BQ6DHV5 1058 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 MIGA1Q8NAN2 632 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 DBNDD2Q9BQY9 259 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 ANKRD2Q9GZV1 360 aa9.6□□□□□ -0.87
LIMCH1-219ENST00000514096 FAM196BA6NMK8 535 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 MKI67P46013 3256 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 GPC2Q8N158 579 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 BOLA2Q9H3K6 86 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 MTMR7Q9Y216 660 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 POTECB2RU33 542 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 UBE2Q2LH0YL09 131 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 PDE8BO95263 885 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 HIRAP54198 1017 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 DZIP1Q86YF9 867 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 GPRC5DQ9NZD1 345 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 PLEKHG2Q9H7P9 1386 aa9.59□□□□□ -0.87
LIMCH1-219ENST00000514096 HUNKP57058 714 aa9.59□□□□□ -0.88
LIMCH1-219ENST00000514096 ANKRD45Q5TZF3 282 aa9.59□□□□□ -0.88
LIMCH1-219ENST00000514096 IFIT2P09913 472 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-219ENST00000514096 CDAN1Q8IWY9 1227 aa9.58□□□□□ -0.88
LIMCH1-219ENST00000514096 SMC1BQ8NDV3 1235 aa9.58□□□□□ -0.88
LIMCH1-219ENST00000514096 FAM84BQ96KN1 310 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-219ENST00000514096 PSMD1Q99460 953 aa9.58□□□□□ -0.88
LIMCH1-219ENST00000514096 FAM43BQ6ZT52 329 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-219ENST00000514096 XAGE2Q96GT9 111 aa9.58□□□□□ -0.88
LIMCH1-219ENST00000514096 KLRG2A4D1S0 409 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 CHGBP05060 677 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 CHADLQ6NUI6 762 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 CCDC84Q86UT8 332 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 LNPKQ9C0E8 428 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 BRCA2P51587 3418 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 KDM3BQ7LBC6 1761 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 AOX1Q06278 1338 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 CDHR2Q9BYE9 1310 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 CSF1RP07333 972 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 CFAP100Q494V2 611 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 TRMT2AQ8IZ69 625 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 HDAC9Q9UKV0 1011 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 SLC4A3P48751 1232 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 MVPQ14764 893 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 PRMT6Q96LA8 375 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 MYOZ2Q9NPC6 264 aa9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 KIAA0100Q14667 2235 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-219ENST00000514096 TNRC6CQ9HCJ0 1690 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 FZD9O00144 591 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 AOC2O75106 756 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 RSBN1LQ6PCB5 846 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 CERS5Q8N5B7 392 aa9.56□□□□□ -0.88
LIMCH1-219ENST00000514096 ANGEL1Q9UNK9 670 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms