RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 IGF2BP3O00425 579 aaKnown RBP eCLIP12.34□□□□□ -0.43
TCOF1-212ENST00000513538 FKTNO75072 461 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 MMP14P50281 582 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 FOXO4P98177 505 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 MAP3K11Q16584 847 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 CCDC27Q2M243 656 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 DNAAF4Q8WXU2 420 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 WNK4Q96J92 1243 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 CHMP4AQ9BY43 222 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 DEFB129Q9H1M3 183 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 PCDH10Q9P2E7 1040 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 JAG2Q9Y219 1238 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 HTTP42858 3142 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 FANCIQ9NVI1 1328 aa12.34□□□□□ -0.43
TCOF1-212ENST00000513538 CLRN2A0PK11 232 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 F8W031 263 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-212ENST00000513538 GJA5P36382 358 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 KCNJ4P48050 445 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 CAP1Q01518 475 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 FKBP5Q13451 457 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-212ENST00000513538 DLGAP5Q15398 846 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 EPHA10Q5JZY3 1008 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 C15orf52Q6ZUT6 534 aaKnown RBP12.33□□□□□ -0.44
TCOF1-212ENST00000513538 IFNL1Q8IU54 200 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 MTMR14Q8NCE2 650 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 LINS1Q8NG48 757 aa12.33□□□□□ -0.44
TCOF1-212ENST00000513538 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-212ENST00000513538 ANKRD18BA2A2Z9 1011 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 SPDYE2BA6NHP3 402 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 F6X3S4 739 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 SPDYE6P0CI01 402 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 IL1R1P14778 569 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 CFAP100Q494V2 611 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 PRMT6Q96LA8 375 aaPredicted RBP12.32□□□□□ -0.44
TCOF1-212ENST00000513538 MYH16Q9H6N6 1097 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 IL16Q14005 1332 aa12.32□□□□□ -0.44
TCOF1-212ENST00000513538 KIAA0100Q14667 2235 aaKnown RBP12.31□□□□□ -0.44
TCOF1-212ENST00000513538 NBPF12Q5TAG4 269 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-212ENST00000513538 CDAN1Q8IWY9 1227 aa12.31□□□□□ -0.44
TCOF1-212ENST00000513538 ZNF594Q96JF6 807 aaPredicted RBP12.31□□□□□ -0.44
TCOF1-212ENST00000513538 POTEFA5A3E0 1075 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 MANSC4A6NHS7 340 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-212ENST00000513538 VAMP4O75379 141 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 USP2O75604 605 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-212ENST00000513538 ZBTB48P10074 688 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-212ENST00000513538 BEND3Q5T5X7 828 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 OTOP1Q7RTM1 612 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 SLC10A4Q96EP9 437 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 VEZTQ9HBM0 779 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 TRIM17Q9Y577 477 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 PPP2R3BQ9Y5P8 575 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 ZSWIM8A7E2V4 1837 aa12.3□□□□□ -0.44
TCOF1-212ENST00000513538 ALDH1A1P00352 501 aa12.29□□□□□ -0.44
TCOF1-212ENST00000513538 FKBP1AP62942 108 aaKnown RBP12.29□□□□□ -0.44
TCOF1-212ENST00000513538 EXOSC9Q06265 439 aaKnown RBP12.29□□□□□ -0.44
TCOF1-212ENST00000513538 CRHR2Q13324 411 aa12.29□□□□□ -0.44
TCOF1-212ENST00000513538 IFIT5Q13325 482 aaKnown RBP12.29□□□□□ -0.44
TCOF1-212ENST00000513538 LMBR1LQ6UX01 489 aa12.29□□□□□ -0.44
TCOF1-212ENST00000513538 ZNF804AQ7Z570 1209 aa12.29□□□□□ -0.44
TCOF1-212ENST00000513538 PTPN18Q99952 460 aa12.29□□□□□ -0.44
TCOF1-212ENST00000513538 CHMP3Q9Y3E7 222 aa12.29□□□□□ -0.44
TCOF1-212ENST00000513538 PPP1R12BO60237 982 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-212ENST00000513538 RASA3Q14644 834 aa12.28□□□□□ -0.44
TCOF1-212ENST00000513538 CD99L2Q8TCZ2 262 aa12.28□□□□□ -0.44
TCOF1-212ENST00000513538 SPINK5Q9NQ38 1064 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-212ENST00000513538 MKI67P46013 3256 aaKnown RBP12.28□□□□□ -0.44
TCOF1-212ENST00000513538 TESPA1A2RU30 521 aaPredicted RBP12.27□□□□□ -0.45
TCOF1-212ENST00000513538 PLIN1O60240 522 aa12.27□□□□□ -0.45
TCOF1-212ENST00000513538 INHBEP58166 350 aa12.27□□□□□ -0.45
TCOF1-212ENST00000513538 GRIK5Q16478 980 aa12.27□□□□□ -0.45
TCOF1-212ENST00000513538 SPDYE2Q495Y8 402 aa12.27□□□□□ -0.45
TCOF1-212ENST00000513538 TEPSINQ96N21 525 aa12.27□□□□□ -0.45
TCOF1-212ENST00000513538 FAM205AQ6ZU69 1335 aa12.27□□□□□ -0.45
TCOF1-212ENST00000513538 GRM8O00222 908 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 MYO1BO43795 1136 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 GYG1P46976 350 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 IREB2P48200 963 aaKnown RBP12.26□□□□□ -0.45
TCOF1-212ENST00000513538 SUPT20HL1Q3ZLR7 823 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 MFSD14BQ5SR56 506 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 ANKRD13AQ8IZ07 590 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 TDRD7Q8NHU6 1098 aaKnown RBP12.26□□□□□ -0.45
TCOF1-212ENST00000513538 KAZALD1Q96I82 304 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 MS4A4AQ96JQ5 239 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 ELP3Q9H9T3 547 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 ZNF70Q9UC06 446 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-212ENST00000513538 PTPN22Q9Y2R2 807 aa12.26□□□□□ -0.45
TCOF1-212ENST00000513538 SALL2Q9Y467 1007 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-212ENST00000513538 CENPFP49454 3210 aa12.25□□□□□ -0.45
TCOF1-212ENST00000513538 UNCXA6NJT0 531 aa12.25□□□□□ -0.45
TCOF1-212ENST00000513538 RBM5P52756 815 aaKnown RBP eCLIP12.25□□□□□ -0.45
TCOF1-212ENST00000513538 LDHAL6AQ6ZMR3 332 aa12.25□□□□□ -0.45
TCOF1-212ENST00000513538 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-212ENST00000513538 BRI3BPQ8WY22 251 aa12.25□□□□□ -0.45
TCOF1-212ENST00000513538 ARMC5Q96C12 935 aa12.25□□□□□ -0.45
TCOF1-212ENST00000513538 OPTNQ96CV9 577 aa12.25□□□□□ -0.45
TCOF1-212ENST00000513538 ERO1AQ96HE7 468 aa12.25□□□□□ -0.45
TCOF1-212ENST00000513538 FAM84BQ96KN1 310 aaPredicted RBP12.25□□□□□ -0.45
TCOF1-212ENST00000513538 PUS3Q9BZE2 481 aaKnown RBP12.25□□□□□ -0.45
TCOF1-212ENST00000513538 TDRD3Q9H7E2 651 aaKnown RBP12.25□□□□□ -0.45
TCOF1-212ENST00000513538 CNNM1Q9NRU3 951 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms