RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 BRD1O95696 1058 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 TUBB4AP04350 444 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 TRIM58Q8NG06 486 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 METTL22Q9BUU2 404 aaPredicted RBP3.36□□□□□ -1.87
NEDD4-204ENST00000503468 FAM217BQ9NTX9 383 aaPredicted RBP3.36□□□□□ -1.87
NEDD4-204ENST00000503468 GSPT1P15170 499 aaKnown RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 IRX3P78415 501 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 RNF20Q5VTR2 975 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 HHIPL1Q96JK4 782 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 TIGD1Q96MW7 591 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 RWDD1Q9H446 243 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 KIF2AO00139 706 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 ATXN8OSP0DMR3 200 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 TNNT3P45378 269 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 ZNF572Q7Z3I7 529 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 RPAINQ86UA6 219 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 MAGEC2Q9UBF1 373 aaPredicted RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 ANK1P16157 1881 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 ZNF106Q9H2Y7 1883 aaKnown RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 ZNF445P59923 1031 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 GCKRQ14397 625 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 EPHA10Q5JZY3 1008 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 KIAA1958Q8N8K9 716 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 C8orf58Q8NAV2 365 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 SYT11Q9BT88 431 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 ORC4O43929 436 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 TATDN1Q6P1N9 297 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 PLXND1Q9Y4D7 1925 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 LYPLA2O95372 231 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 MUTP22033 750 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 PSMD1Q99460 953 aa3.35□□□□□ -1.87
NEDD4-204ENST00000503468 CWC15Q9P013 229 aaKnown RBP3.35□□□□□ -1.87
NEDD4-204ENST00000503468 SCP2P22307 547 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 GTF2F1P35269 517 aaKnown RBP eCLIP3.34□□□□□ -1.87
NEDD4-204ENST00000503468 USP8P40818 1118 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 CLK2P49760 499 aaKnown RBP3.34□□□□□ -1.87
NEDD4-204ENST00000503468 UVSSAQ2YD98 709 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 KAT2BQ92831 832 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 HIRIP3Q9BW71 556 aaPredicted RBP3.34□□□□□ -1.87
NEDD4-204ENST00000503468 RGS3P49796 1198 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 MARSP56192 900 aaKnown RBP3.34□□□□□ -1.87
NEDD4-204ENST00000503468 ZNF280AP59817 542 aaPredicted RBP3.34□□□□□ -1.87
NEDD4-204ENST00000503468 MYRIPQ8NFW9 859 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 ORAI2Q96SN7 254 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 RBM28Q9NW13 759 aaKnown RBP3.34□□□□□ -1.87
NEDD4-204ENST00000503468 NARFQ9UHQ1 456 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 MGAMO43451 1857 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 SAGE1Q9NXZ1 904 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 CHIC2Q9UKJ5 165 aa3.34□□□□□ -1.87
NEDD4-204ENST00000503468 RPS6KA4O75676 772 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 KCNA3P22001 575 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 PBX1P40424 430 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 PARP10Q53GL7 1025 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 HDGFL2Q7Z4V5 671 aaPredicted RBP3.34□□□□□ -1.88
NEDD4-204ENST00000503468 BRMS1Q9HCU9 246 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 CSRP3P50461 194 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 CC2D1BQ5T0F9 858 aaKnown RBP3.34□□□□□ -1.88
NEDD4-204ENST00000503468 GPR65Q8IYL9 337 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 LSG1Q9H089 658 aaKnown RBP3.34□□□□□ -1.88
NEDD4-204ENST00000503468 HSD3B7Q9H2F3 369 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 FOXD4L1Q9NU39 408 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 HYPKQ9NX55 129 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 TUBE1Q9UJT0 475 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 FBXL5Q9UKA1 691 aa3.34□□□□□ -1.88
NEDD4-204ENST00000503468 DDX49Q9Y6V7 483 aaKnown RBP3.34□□□□□ -1.88
NEDD4-204ENST00000503468 UQCRHLA0A096LP55 91 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 CAVIN2O95810 425 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 UQCRHP07919 91 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 TEX35Q5T0J7 233 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.33□□□□□ -1.882e-6■■□□□ 14.1
NEDD4-204ENST00000503468 TRPV6Q9H1D0 765 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 CWC22Q9HCG8 908 aaKnown RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 ZSWIM6Q9HCJ5 1215 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 MYH2Q9UKX2 1941 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 U2AF2P26368 475 aaKnown RBP eCLIP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 PSME1Q06323 249 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 C14orf37Q86TY3 774 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 PIAS4Q8N2W9 510 aaPredicted RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 TACO1Q9BSH4 297 aaKnown RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 R3HCC1Q9Y3T6 440 aaKnown RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 MYO1BO43795 1136 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 MCM2P49736 904 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 TCIRG1Q13488 830 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 COL19A1Q14993 1142 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 IFNL2Q8IZJ0 200 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 LINC01465Q8N7H1 131 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 DSCC1Q9BVC3 393 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 FAM107BQ9H098 131 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 V9GYY5 206 aaPredicted RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 ZSCAN20P17040 1043 aaPredicted RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 TNK2Q07912 1038 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 ZNF496Q96IT1 587 aaPredicted RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 OGFRQ9NZT2 677 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 DAAM1Q9Y4D1 1078 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 KIAA1549LQ6ZVL6 1849 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 NEURL1BA8MQ27 555 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 CIITAP33076 1130 aa3.33□□□□□ -1.88
NEDD4-204ENST00000503468 SARSP49591 514 aaKnown RBP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 WDR43Q15061 677 aaKnown RBP eCLIP3.33□□□□□ -1.88
NEDD4-204ENST00000503468 TDRD7Q8NHU6 1098 aaKnown RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms