RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 NID1P14543 1247 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 PRSS36Q5K4E3 855 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 TRAPPC3LQ5T215 181 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 ARTNQ5T4W7 220 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 LCE3BQ5TA77 95 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 FGD6Q6ZV73 1430 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 SAP130Q9H0E3 1048 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 JPH1Q9HDC5 661 aaPredicted RBP6.46□□□□□ -1.38
USP54-217ENST00000498213 ZFP64Q9NPA5 681 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 DNAJB12Q9NXW2 375 aaKnown RBP6.46□□□□□ -1.38
USP54-217ENST00000498213 UGGT1Q9NYU2 1555 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 PRXQ9BXM0 1461 aa6.46□□□□□ -1.38
USP54-217ENST00000498213 KDM5DQ9BY66 1539 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 EEA1Q15075 1411 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 XYLBO75191 536 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 SASH3O75995 380 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 LTKP29376 864 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 DHX32Q7L7V1 743 aaKnown RBP6.45□□□□□ -1.38
USP54-217ENST00000498213 TXNDC2Q86VQ3 553 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 ABTB2Q8N961 1025 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 C1orf115Q9H7X2 142 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 C11orf16Q9NQ32 467 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 USP20Q9Y2K6 914 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 DEPDC5O75140 1603 aa6.45□□□□□ -1.38
USP54-217ENST00000498213 COL16A1Q07092 1604 aaPredicted RBP6.45□□□□□ -1.38
USP54-217ENST00000498213 XIRP1Q702N8 1843 aaKnown RBP6.45□□□□□ -1.38
USP54-217ENST00000498213 SPAG9O60271 1321 aaKnown RBP6.45□□□□□ -1.38
USP54-217ENST00000498213 MIA2Q96PC5 1412 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 C9orf172C9J069 976 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 TARSP26639 723 aaKnown RBP6.44□□□□□ -1.38
USP54-217ENST00000498213 SF3B2Q13435 895 aaKnown RBP6.44□□□□□ -1.38
USP54-217ENST00000498213 R3HDM1Q15032 1099 aaKnown RBP6.44□□□□□ -1.38
USP54-217ENST00000498213 C20orf204Q6ZNR8 217 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 CAPN12Q6ZSI9 719 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 FAM35AQ86V20 835 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 ETFBKMTQ8IXQ9 262 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 NUDT8Q8WV74 236 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 PIK3R5Q8WYR1 880 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 LRRC9Q6ZRR7 1453 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 KIDINS220Q9ULH0 1771 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 MSH6P52701 1360 aa6.44□□□□□ -1.38
USP54-217ENST00000498213 OPLAHO14841 1288 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 RGS9O75916 674 aaPredicted RBP6.43□□□□□ -1.38
USP54-217ENST00000498213 MAP3K6O95382 1288 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 PSAPP07602 524 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 CPB1P15086 417 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 KCNA6P17658 529 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 GRNP28799 593 aaKnown RBP6.43□□□□□ -1.38
USP54-217ENST00000498213 HNRNPMP52272 730 aaKnown RBP eCLIP6.43□□□□□ -1.383e-6■■■■□ 21.2
USP54-217ENST00000498213 PSAPL1Q6NUJ1 521 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 NBPF11Q86T75 865 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 ARID3AQ99856 593 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 STIM2Q9P246 746 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 USP21Q9UK80 565 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 MTMR7Q9Y216 660 aa6.43□□□□□ -1.38
USP54-217ENST00000498213 EP400Q96L91 3159 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 MAP3K1Q13233 1512 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 ZAP70P43403 619 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 MLLT1Q03111 559 aaPredicted RBP6.42□□□□□ -1.38
USP54-217ENST00000498213 ADGRE1Q14246 886 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 ELMSAN1Q6PJG2 1045 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 TTC16Q8NEE8 873 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 SLC26A8Q96RN1 970 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 RBSNQ9H1K0 784 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 ZFATQ9P243 1243 aa6.42□□□□□ -1.38
USP54-217ENST00000498213 FNDC3AQ9Y2H6 1198 aaKnown RBP6.42□□□□□ -1.38
USP54-217ENST00000498213 BLMP54132 1417 aaPredicted RBP6.42□□□□□ -1.38
USP54-217ENST00000498213 A2MP01023 1474 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 A0A0A0MRY4 1105 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 TNFRSF10BO14763 440 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 H2AFB1P0C5Y9 115 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 H2AFB2P0C5Z0 115 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 SELPP16109 830 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 EIF2AK2P19525 551 aaKnown RBP6.41□□□□□ -1.38
USP54-217ENST00000498213 RAC1P63000 192 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 GPLD1P80108 840 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 PLAURQ03405 335 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 MBTPS1Q14703 1052 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 GPR152Q8TDT2 470 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 SEPT3Q9UH03 358 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 TRPC5Q9UL62 973 aaPredicted RBP6.41□□□□□ -1.38
USP54-217ENST00000498213 WASHC2CQ9Y4E1 1318 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 MYO5CQ9NQX4 1742 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 SCAF11Q99590 1463 aaKnown RBP6.41□□□□□ -1.38
USP54-217ENST00000498213 NLRP1Q9C000 1473 aa6.41□□□□□ -1.38
USP54-217ENST00000498213 ATP7AQ04656 1500 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 NHSL1Q5SYE7 1610 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 CEP350Q5VT06 3117 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 EGFRP00533 1210 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 GHRHP01286 108 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 ELNP15502 786 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 PCSK2P16519 638 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 NRLP54845 237 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 TXNRD3Q86VQ6 643 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 TRPM4Q8TD43 1214 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 TLR7Q9NYK1 1049 aaKnown RBP6.4□□□□□ -1.38
USP54-217ENST00000498213 NAGPAQ9UK23 515 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 KCNMB2Q9Y691 235 aa6.4□□□□□ -1.38
USP54-217ENST00000498213 BCL9LQ86UU0 1499 aa6.4□□□□□ -1.39
USP54-217ENST00000498213 NWD1Q149M9 1564 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms