RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, human

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-210	ENST00000497440	RBM26	Q5T8P6	1007 aa	Known RBP	13.63	□□□□□ -0.23
SHROOM3-210	ENST00000497440	TMEM57	Q8N5G2	664 aa		13.63	□□□□□ -0.23
SHROOM3-210	ENST00000497440	DCPS	Q96C86	337 aa	Known RBP	13.63	□□□□□ -0.23
SHROOM3-210	ENST00000497440	GGA3	Q9NZ52	723 aa		13.63	□□□□□ -0.23
SHROOM3-210	ENST00000497440	THSD7B	Q9C0I4	1608 aa		13.63	□□□□□ -0.23
SHROOM3-210	ENST00000497440	IL15	P40933	162 aa	Predicted RBP	13.62	□□□□□ -0.23
SHROOM3-210	ENST00000497440	PUM3	Q15397	648 aa	Known RBP	13.62	□□□□□ -0.23
SHROOM3-210	ENST00000497440	ANGEL2	Q5VTE6	544 aa	Known RBP	13.62	□□□□□ -0.23
SHROOM3-210	ENST00000497440	KIAA0825	Q8IV33	1275 aa		13.62	□□□□□ -0.23
SHROOM3-210	ENST00000497440	LPIN2	Q92539	896 aa		13.62	□□□□□ -0.23
SHROOM3-210	ENST00000497440	WBP1L	Q9NX94	342 aa		13.62	□□□□□ -0.23
SHROOM3-210	ENST00000497440	WDR33	Q9C0J8	1336 aa	Known RBP	13.62	□□□□□ -0.23
SHROOM3-210	ENST00000497440	ADM5	C9JUS6	153 aa		13.61	□□□□□ -0.23
SHROOM3-210	ENST00000497440	GNAI2	P04899	355 aa		13.61	□□□□□ -0.23
SHROOM3-210	ENST00000497440	RLBP1	P12271	317 aa		13.61	□□□□□ -0.23
SHROOM3-210	ENST00000497440	HDLBP	Q00341	1268 aa	Known RBP	13.61	□□□□□ -0.23
SHROOM3-210	ENST00000497440	SULF1	Q8IWU6	871 aa		13.61	□□□□□ -0.23
SHROOM3-210	ENST00000497440	SPDYE2B	A6NHP3	402 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	SPDYE6	P0CI01	402 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	MAP2K2	P36507	400 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	BCAM	P50895	628 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	FKBP1B	P68106	108 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	POLA2	Q14181	598 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	FRAT1	Q92837	279 aa	Predicted RBP	13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	PRMT6	Q96LA8	375 aa	Predicted RBP	13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	SERPINA10	Q9UK55	444 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	HDAC9	Q9UKV0	1011 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	PA2G4	Q9UQ80	394 aa	Known RBP	13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	SUGT1	Q9Y2Z0	365 aa		13.6	□□□□□ -0.23
SHROOM3-210	ENST00000497440	FAM155A	B1AL88	458 aa	Predicted RBP	13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	IFIT1	P09914	478 aa	Known RBP	13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	GRIK5	Q16478	980 aa		13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	CAVIN4	Q5BKX8	364 aa		13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	DZIP1L	Q8IYY4	767 aa	Known RBP	13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	SSH3	Q8TE77	659 aa		13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	CLUAP1	Q96AJ1	413 aa		13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	CDCA5	Q96FF9	252 aa		13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	CAPNS2	Q96L46	248 aa		13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	GBA2	Q9HCG7	927 aa	Predicted RBP	13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	AOX1	Q06278	1338 aa		13.59	□□□□□ -0.23
SHROOM3-210	ENST00000497440	PNMA6E	A0A0J9YXQ4	647 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	SRGAP3	O43295	1099 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	HSPA1A	P0DMV8	641 aa	Known RBP	13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	HSPA1B	P0DMV9	641 aa	Known RBP	13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ECE1	P42892	770 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ATP8B2	P98198	1209 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	MFSD14B	Q5SR56	506 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	TBC1D22A	Q8WUA7	517 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	CEP126	Q9P2H0	1117 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ABT1	Q9ULW3	272 aa	Known RBP	13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	PCDHAC2	Q9Y5I4	1007 aa		13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.58	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ARAP2	Q8WZ64	1704 aa		13.57	□□□□□ -0.24
SHROOM3-210	ENST00000497440	DLGAP5	Q15398	846 aa		13.57	□□□□□ -0.24
SHROOM3-210	ENST00000497440	CYP4F22	Q6NT55	531 aa		13.57	□□□□□ -0.24
SHROOM3-210	ENST00000497440	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-210	ENST00000497440	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.57	□□□□□ -0.24
SHROOM3-210	ENST00000497440	NOP58	Q9Y2X3	529 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-210	ENST00000497440	SALL1	Q9NSC2	1324 aa		13.57	□□□□□ -0.24
SHROOM3-210	ENST00000497440	COL1A1	P02452	1464 aa	Predicted RBP	13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ECM29	Q5VYK3	1845 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	SEMA3E	O15041	775 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	SLC5A1	P13866	664 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	HUNK	P57058	714 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	MAP2K1	Q02750	393 aa	Predicted RBP	13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	MAP3K11	Q16584	847 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ATP2B3	Q16720	1220 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	CFAP100	Q494V2	611 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	C2orf69	Q8N8R5	385 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	SIL1	Q9H173	461 aa		13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	PDS5A	Q29RF7	1337 aa	Known RBP	13.56	□□□□□ -0.24
SHROOM3-210	ENST00000497440	SPDYE2	Q495Y8	402 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	LDLRAD1	Q5T700	205 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	RGMB	Q6NW40	437 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	HHIPL2	Q6UWX4	724 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	WDR66	Q8TBY9	1149 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	FBXW7	Q969H0	707 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	DEFB129	Q9H1M3	183 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	GPR108	Q9NPR9	543 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	TTF2	Q9UNY4	1162 aa	Known RBP	13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	JAG2	Q9Y219	1238 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	PPP2R3B	Q9Y5P8	575 aa		13.55	□□□□□ -0.24
SHROOM3-210	ENST00000497440	PAPPA2	Q9BXP8	1791 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	UNCX	A6NJT0	531 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	FOXN1	O15353	648 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	CRK	P46108	304 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	TIMM10	P62072	90 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	NOG	Q13253	232 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	FKBP1C	Q5VVH2	108 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	VPS37D	Q86XT2	251 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	CCDC102A	Q96A19	550 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ZDHHC15	Q96MV8	337 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ZIC5	Q96T25	663 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	PRDM10	Q9NQV6	1147 aa		13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.54	□□□□□ -0.24
SHROOM3-210	ENST00000497440		A0A1B0GUL7	405 aa		13.53	□□□□□ -0.24
SHROOM3-210	ENST00000497440	MS4A1	P11836	297 aa		13.53	□□□□□ -0.24
SHROOM3-210	ENST00000497440	ADORA1	P30542	326 aa		13.53	□□□□□ -0.24
SHROOM3-210	ENST00000497440	PHKA1	P46020	1223 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms