RNA–Protein interactions for RNA: ENST00000496744.5

ECM1-206, Transcript of extracellular matrix protein 1, human

TSL 3

Gene ECM1, Length 1,030 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECM1-206	ENST00000496744	ZNF408	Q9H9D4	720 aa		13.66	□□□□□ -0.22
ECM1-206	ENST00000496744	SCAF8	Q9UPN6	1271 aa	Known RBP	13.66	□□□□□ -0.22
ECM1-206	ENST00000496744	JAG2	Q9Y219	1238 aa		13.66	□□□□□ -0.22
ECM1-206	ENST00000496744	PITPNM2	Q9BZ72	1349 aa		13.65	□□□□□ -0.22
ECM1-206	ENST00000496744	FRAT1	Q92837	279 aa	Predicted RBP	13.65	□□□□□ -0.22
ECM1-206	ENST00000496744	CDCA5	Q96FF9	252 aa		13.65	□□□□□ -0.22
ECM1-206	ENST00000496744	CAPNS2	Q96L46	248 aa		13.65	□□□□□ -0.22
ECM1-206	ENST00000496744	WBP1L	Q9NX94	342 aa		13.65	□□□□□ -0.22
ECM1-206	ENST00000496744	MTMR14	Q8NCE2	650 aa		13.64	□□□□□ -0.23
ECM1-206	ENST00000496744	CLUAP1	Q96AJ1	413 aa		13.64	□□□□□ -0.23
ECM1-206	ENST00000496744	PCDHAC2	Q9Y5I4	1007 aa		13.64	□□□□□ -0.23
ECM1-206	ENST00000496744	CIAO1	O76071	339 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	GNAI3	P08754	354 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	ECE1	P42892	770 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	BCAM	P50895	628 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	MTX1	Q13505	466 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	PUM3	Q15397	648 aa	Known RBP	13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	ZKSCAN2	Q63HK3	967 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	GBA2	Q9HCG7	927 aa	Predicted RBP	13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	COPRS	Q9NQ92	184 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	FBXO3	Q9UK99	471 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	HDAC9	Q9UKV0	1011 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	PA2G4	Q9UQ80	394 aa	Known RBP	13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	HDAC5	Q9UQL6	1122 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744	AOX1	Q06278	1338 aa		13.63	□□□□□ -0.23
ECM1-206	ENST00000496744		F8W031	263 aa	Predicted RBP	13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	FOXN1	O15353	648 aa		13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	AOC2	O75106	756 aa		13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	HUNK	P57058	714 aa		13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	GRIK5	Q16478	980 aa		13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	PRAMEF18	Q5VWM3	479 aa		13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	TMEM57	Q8N5G2	664 aa		13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	PRMT6	Q96LA8	375 aa	Predicted RBP	13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	SIL1	Q9H173	461 aa		13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.62	□□□□□ -0.23
ECM1-206	ENST00000496744	FAM155A	B1AL88	458 aa	Predicted RBP	13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	MAP2K2	P36507	400 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	GRM1	Q13255	1194 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	DLGAP5	Q15398	846 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	CFAP100	Q494V2	611 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	MFSD14B	Q5SR56	506 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	C2orf69	Q8N8R5	385 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	ZIC5	Q96T25	663 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	THSD7B	Q9C0I4	1608 aa		13.61	□□□□□ -0.23
ECM1-206	ENST00000496744	SPDYE2B	A6NHP3	402 aa		13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	IFIT1	P09914	478 aa	Known RBP	13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	SPDYE6	P0CI01	402 aa		13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	RLBP1	P12271	317 aa		13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	IL15	P40933	162 aa	Predicted RBP	13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	MAP2K1	Q02750	393 aa	Predicted RBP	13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	CAVIN4	Q5BKX8	364 aa		13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	LPIN2	Q92539	896 aa		13.6	□□□□□ -0.23
ECM1-206	ENST00000496744	SRGAP3	O43295	1099 aa		13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	GNAI2	P04899	355 aa		13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	RGMB	Q6NW40	437 aa		13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	MOB2	Q70IA6	237 aa		13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	VPS37D	Q86XT2	251 aa		13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	CEP126	Q9P2H0	1117 aa		13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	TTF2	Q9UNY4	1162 aa	Known RBP	13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.59	□□□□□ -0.23
ECM1-206	ENST00000496744	PNMA6E	A0A0J9YXQ4	647 aa		13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	SLC5A1	P13866	664 aa		13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	FKBP1B	P68106	108 aa		13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	CHAF1A	Q13111	956 aa	Predicted RBP	13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	ATP2B3	Q16720	1220 aa		13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	DEFB129	Q9H1M3	183 aa		13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	SERPINA10	Q9UK55	444 aa		13.58	□□□□□ -0.24
ECM1-206	ENST00000496744	CLRN2	A0PK11	232 aa		13.57	□□□□□ -0.24
ECM1-206	ENST00000496744	ZBTB7B	O15156	539 aa	Predicted RBP	13.57	□□□□□ -0.24
ECM1-206	ENST00000496744	IFFO2	Q5TF58	517 aa		13.57	□□□□□ -0.24
ECM1-206	ENST00000496744	DZIP1L	Q8IYY4	767 aa	Known RBP	13.57	□□□□□ -0.24
ECM1-206	ENST00000496744	TBC1D22A	Q8WUA7	517 aa		13.57	□□□□□ -0.24
ECM1-206	ENST00000496744	COL1A1	P02452	1464 aa	Predicted RBP	13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	UBE2Q2L	H0YL09	131 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	ZBTB22	O15209	634 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	FRAT2	O75474	233 aa	Predicted RBP	13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	HSPA8	P11142	646 aa	Known RBP	13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	ADORA1	P30542	326 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	CRK	P46108	304 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	CTCF	P49711	727 aa	Predicted RBP	13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	ZNF157	P51786	506 aa	Predicted RBP	13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	TIMM10	P62072	90 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	NOG	Q13253	232 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	CCDC102A	Q96A19	550 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	AIDA	Q96BJ3	306 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	MRI	Q9BWK5	157 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	PRDM10	Q9NQV6	1147 aa		13.56	□□□□□ -0.24
ECM1-206	ENST00000496744	SLC10A3	P09131	477 aa		13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	PHKA1	P46020	1223 aa		13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	RBM5	P52756	815 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	LBX1	P52954	281 aa		13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	HDLBP	Q00341	1268 aa	Known RBP	13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	TFCP2	Q12800	502 aa		13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	POLA2	Q14181	598 aa		13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	SPDYE2	Q495Y8	402 aa		13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	TDRD3	Q9H7E2	651 aa	Known RBP	13.55	□□□□□ -0.24
ECM1-206	ENST00000496744	ZNF70	Q9UC06	446 aa	Predicted RBP	13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms