RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ZBED3Q96IU2 234 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-214ENST00000496043 FAM84BQ96KN1 310 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-214ENST00000496043 API5Q9BZZ5 524 aaKnown RBP15.99■□□□□ 0.15
PTPRF-214ENST00000496043 PSME4Q14997 1843 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 FAM155AB1AL88 458 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-214ENST00000496043 F8W031 263 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-214ENST00000496043 NF2P35240 595 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 GYG1P46976 350 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 KIF23Q02241 960 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-214ENST00000496043 LRRC24Q50LG9 513 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 METTL24Q5JXM2 366 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 APOBEC3FQ8IUX4 373 aaKnown RBP15.98■□□□□ 0.15
PTPRF-214ENST00000496043 MTMR14Q8NCE2 650 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 ZIC5Q96T25 663 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 HDAC5Q9UQL6 1122 aa15.98■□□□□ 0.15
PTPRF-214ENST00000496043 FAM205AQ6ZU69 1335 aa15.97■□□□□ 0.15
PTPRF-214ENST00000496043 PDE8BO95263 885 aa15.97■□□□□ 0.15
PTPRF-214ENST00000496043 CAVIN4Q5BKX8 364 aa15.97■□□□□ 0.15
PTPRF-214ENST00000496043 FBXO33Q7Z6M2 555 aa15.97■□□□□ 0.15
PTPRF-214ENST00000496043 VPS37DQ86XT2 251 aa15.97■□□□□ 0.15
PTPRF-214ENST00000496043 UBE2Q2LH0YL09 131 aa15.96■□□□□ 0.15
PTPRF-214ENST00000496043 MYO1BO43795 1136 aa15.96■□□□□ 0.15
PTPRF-214ENST00000496043 UBTFL1P0CB47 393 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-214ENST00000496043 RARSP54136 660 aaKnown RBP15.96■□□□□ 0.15
PTPRF-214ENST00000496043 TTLL12Q14166 644 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-214ENST00000496043 CFAP100Q494V2 611 aa15.96■□□□□ 0.15
PTPRF-214ENST00000496043 TSKSQ9UJT2 592 aa15.96■□□□□ 0.15
PTPRF-214ENST00000496043 JAG2Q9Y219 1238 aa15.96■□□□□ 0.15
PTPRF-214ENST00000496043 SLC10A3P09131 477 aa15.95■□□□□ 0.14
PTPRF-214ENST00000496043 RBM5P52756 815 aaKnown RBP eCLIP15.95■□□□□ 0.14
PTPRF-214ENST00000496043 MOB2Q70IA6 237 aa15.95■□□□□ 0.14
PTPRF-214ENST00000496043 REM2Q8IYK8 340 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-214ENST00000496043 KLHDC4Q8TBB5 520 aa15.95■□□□□ 0.14
PTPRF-214ENST00000496043 ARHGAP45Q92619 1136 aa15.95■□□□□ 0.14
PTPRF-214ENST00000496043 EYA2O00167 538 aa15.94■□□□□ 0.14
PTPRF-214ENST00000496043 FRAT2O75474 233 aaPredicted RBP15.94■□□□□ 0.14
PTPRF-214ENST00000496043 MFSD14BQ5SR56 506 aa15.94■□□□□ 0.14
PTPRF-214ENST00000496043 ARMC9Q7Z3E5 817 aa15.94■□□□□ 0.14
PTPRF-214ENST00000496043 PRMT6Q96LA8 375 aaPredicted RBP15.94■□□□□ 0.14
PTPRF-214ENST00000496043 CSRNP1Q96S65 589 aa15.94■□□□□ 0.14
PTPRF-214ENST00000496043 DEFB129Q9H1M3 183 aa15.94■□□□□ 0.14
PTPRF-214ENST00000496043 SPDYE2BA6NHP3 402 aa15.93■□□□□ 0.14
PTPRF-214ENST00000496043 IPO8O15397 1037 aaKnown RBP15.93■□□□□ 0.14
PTPRF-214ENST00000496043 IFIT1P09914 478 aaKnown RBP15.93■□□□□ 0.14
PTPRF-214ENST00000496043 SPDYE6P0CI01 402 aa15.93■□□□□ 0.14
PTPRF-214ENST00000496043 RFX5P48382 616 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-214ENST00000496043 PTPN12Q05209 780 aaKnown RBP15.93■□□□□ 0.14
PTPRF-214ENST00000496043 DIEXFQ68CQ4 756 aaKnown RBP15.93■□□□□ 0.14
PTPRF-214ENST00000496043 MIER1Q8N108 512 aa15.93■□□□□ 0.14
PTPRF-214ENST00000496043 VGLL2Q8N8G2 317 aa15.93■□□□□ 0.14
PTPRF-214ENST00000496043 TTF2Q9UNY4 1162 aaKnown RBP15.93■□□□□ 0.14
PTPRF-214ENST00000496043 PCDHAC2Q9Y5I4 1007 aa15.93■□□□□ 0.14
PTPRF-214ENST00000496043 BCAMP50895 628 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 PUM3Q15397 648 aaKnown RBP15.92■□□□□ 0.14
PTPRF-214ENST00000496043 RASAL3Q86YV0 1011 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 TBC1D22AQ8WUA7 517 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 RNF186Q9NXI6 227 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 SERPINA10Q9UK55 444 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 FBXO3Q9UK99 471 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 PPP2R3BQ9Y5P8 575 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 THSD7BQ9C0I4 1608 aa15.92■□□□□ 0.14
PTPRF-214ENST00000496043 CLRN2A0PK11 232 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 TRPA1O75762 1119 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 FGFR2P21802 821 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 CHAF1AQ13111 956 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-214ENST00000496043 PRKG1Q13976 671 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 SUPT20HL1Q3ZLR7 823 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 VEZTQ9HBM0 779 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 SAGE1Q9NXZ1 904 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 CEP126Q9P2H0 1117 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 IQSEC3Q9UPP2 1182 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-214ENST00000496043 KIF16BQ96L93 1317 aa15.91■□□□□ 0.14
PTPRF-214ENST00000496043 PPP1R12BO60237 982 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-214ENST00000496043 SLC5A1P13866 664 aa15.9■□□□□ 0.14
PTPRF-214ENST00000496043 INTS3Q68E01 1043 aaKnown RBP15.9■□□□□ 0.14
PTPRF-214ENST00000496043 LPIN2Q92539 896 aa15.9■□□□□ 0.14
PTPRF-214ENST00000496043 ANGEL1Q9UNK9 670 aaKnown RBP15.9■□□□□ 0.14
PTPRF-214ENST00000496043 LRRFIP2Q9Y608 721 aaKnown RBP15.9■□□□□ 0.14
PTPRF-214ENST00000496043 CIAO1O76071 339 aa15.89■□□□□ 0.13
PTPRF-214ENST00000496043 GNAI3P08754 354 aa15.89■□□□□ 0.13
PTPRF-214ENST00000496043 HDLBPQ00341 1268 aaKnown RBP15.89■□□□□ 0.13
PTPRF-214ENST00000496043 LDLRAD1Q5T700 205 aa15.89■□□□□ 0.13
PTPRF-214ENST00000496043 ATG9AQ7Z3C6 839 aa15.89■□□□□ 0.13
PTPRF-214ENST00000496043 DZIP1LQ8IYY4 767 aaKnown RBP15.89■□□□□ 0.13
PTPRF-214ENST00000496043 SLC10A4Q96EP9 437 aa15.89■□□□□ 0.13
PTPRF-214ENST00000496043 MRIQ9BWK5 157 aa15.89■□□□□ 0.13
PTPRF-214ENST00000496043 ZNF70Q9UC06 446 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-214ENST00000496043 CRKP46108 304 aa15.88■□□□□ 0.13
PTPRF-214ENST00000496043 TNFAIP1Q13829 316 aa15.88■□□□□ 0.13
PTPRF-214ENST00000496043 RASA3Q14644 834 aa15.88■□□□□ 0.13
PTPRF-214ENST00000496043 FRAT1Q92837 279 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-214ENST00000496043 ABHD8Q96I13 439 aa15.88■□□□□ 0.13
PTPRF-214ENST00000496043 MEIS3Q99687 375 aa15.88■□□□□ 0.13
PTPRF-214ENST00000496043 SIL1Q9H173 461 aa15.88■□□□□ 0.13
PTPRF-214ENST00000496043 TDRD3Q9H7E2 651 aaKnown RBP15.88■□□□□ 0.13
PTPRF-214ENST00000496043 ZNF646O15015 1829 aaPredicted RBP15.88■□□□□ 0.13
PTPRF-214ENST00000496043 PAPPA2Q9BXP8 1791 aa15.87■□□□□ 0.13
PTPRF-214ENST00000496043 COL1A1P02452 1464 aaPredicted RBP15.87■□□□□ 0.13
PTPRF-214ENST00000496043 UNCXA6NJT0 531 aa15.87■□□□□ 0.13
PTPRF-214ENST00000496043 BCAR3O75815 825 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms