RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 SASH1O94885 1247 aa41.5■■■■■ 4.23
CBX4-203ENST00000494546 PTPN12Q05209 780 aaKnown RBP41.5■■■■■ 4.23
CBX4-203ENST00000494546 CLUAP1Q96AJ1 413 aa41.5■■■■■ 4.23
CBX4-203ENST00000494546 SCAF8Q9UPN6 1271 aaKnown RBP41.5■■■■■ 4.23
CBX4-203ENST00000494546 F8W031 263 aaPredicted RBP41.49■■■■■ 4.23
CBX4-203ENST00000494546 VPS37DQ86XT2 251 aa41.49■■■■■ 4.23
CBX4-203ENST00000494546 TDRD7Q8NHU6 1098 aaKnown RBP41.49■■■■■ 4.23
CBX4-203ENST00000494546 CDCA5Q96FF9 252 aa41.49■■■■■ 4.23
CBX4-203ENST00000494546 GBA2Q9HCG7 927 aaPredicted RBP41.48■■■■■ 4.23
CBX4-203ENST00000494546 GNAI3P08754 354 aa41.47■■■■■ 4.23
CBX4-203ENST00000494546 SIL1Q9H173 461 aa41.47■■■■■ 4.23
CBX4-203ENST00000494546 HUNKP57058 714 aa41.46■■■■■ 4.23
CBX4-203ENST00000494546 FKBP1AP62942 108 aaKnown RBP41.46■■■■■ 4.23
CBX4-203ENST00000494546 C2orf69Q8N8R5 385 aa41.46■■■■■ 4.23
CBX4-203ENST00000494546 HHIPL1Q96JK4 782 aa41.46■■■■■ 4.23
CBX4-203ENST00000494546 CAVIN4Q5BKX8 364 aa41.45■■■■■ 4.23
CBX4-203ENST00000494546 FAM205AQ6ZU69 1335 aa41.44■■■■■ 4.23
CBX4-203ENST00000494546 PUM3Q15397 648 aaKnown RBP41.44■■■■■ 4.22
CBX4-203ENST00000494546 ZKSCAN2Q63HK3 967 aa41.44■■■■■ 4.22
CBX4-203ENST00000494546 FBXO33Q7Z6M2 555 aa41.44■■■■■ 4.22
CBX4-203ENST00000494546 AIDAQ96BJ3 306 aa41.44■■■■■ 4.22
CBX4-203ENST00000494546 ATG9AQ7Z3C6 839 aa41.43■■■■■ 4.22
CBX4-203ENST00000494546 IQSEC3Q9UPP2 1182 aaPredicted RBP41.43■■■■■ 4.22
CBX4-203ENST00000494546 DLGAP5Q15398 846 aa41.42■■■■■ 4.22
CBX4-203ENST00000494546 IFIT1P09914 478 aaKnown RBP41.41■■■■■ 4.22
CBX4-203ENST00000494546 MFSD14BQ5SR56 506 aa41.41■■■■■ 4.22
CBX4-203ENST00000494546 ZBED3Q96IU2 234 aaPredicted RBP41.41■■■■■ 4.22
CBX4-203ENST00000494546 WBP1LQ9NX94 342 aa41.41■■■■■ 4.22
CBX4-203ENST00000494546 FOXN1O15353 648 aa41.4■■■■■ 4.22
CBX4-203ENST00000494546 AOC2O75106 756 aa41.4■■■■■ 4.22
CBX4-203ENST00000494546 FRAT2O75474 233 aaPredicted RBP41.4■■■■■ 4.22
CBX4-203ENST00000494546 FBXO3Q9UK99 471 aa41.4■■■■■ 4.22
CBX4-203ENST00000494546 PA2G4Q9UQ80 394 aaKnown RBP41.4■■■■■ 4.22
CBX4-203ENST00000494546 FGFR2P21802 821 aa41.39■■■■■ 4.22
CBX4-203ENST00000494546 BCAMP50895 628 aa41.39■■■■■ 4.22
CBX4-203ENST00000494546 MAP2K1Q02750 393 aaPredicted RBP41.39■■■■■ 4.22
CBX4-203ENST00000494546 CIAO1O76071 339 aa41.38■■■■■ 4.21
CBX4-203ENST00000494546 COL13A1Q5TAT6 717 aaPredicted RBP41.38■■■■■ 4.21
CBX4-203ENST00000494546 PRAMEF18Q5VWM3 479 aa41.38■■■■■ 4.21
CBX4-203ENST00000494546 SLC5A1P13866 664 aa41.37■■■■■ 4.21
CBX4-203ENST00000494546 CHAF1AQ13111 956 aaPredicted RBP41.37■■■■■ 4.21
CBX4-203ENST00000494546 CFAP100Q494V2 611 aa41.37■■■■■ 4.21
CBX4-203ENST00000494546 TMEM57Q8N5G2 664 aa41.37■■■■■ 4.21
CBX4-203ENST00000494546 PCDHAC2Q9Y5I4 1007 aa41.37■■■■■ 4.21
CBX4-203ENST00000494546 MTMR14Q8NCE2 650 aa41.36■■■■■ 4.21
CBX4-203ENST00000494546 LPIN2Q92539 896 aa41.36■■■■■ 4.21
CBX4-203ENST00000494546 CEP126Q9P2H0 1117 aa41.36■■■■■ 4.21
CBX4-203ENST00000494546 RBM5P52756 815 aaKnown RBP eCLIP41.35■■■■■ 4.21
CBX4-203ENST00000494546 APOBEC3FQ8IUX4 373 aaKnown RBP41.35■■■■■ 4.21
CBX4-203ENST00000494546 THSD7BQ9C0I4 1608 aa41.35■■■■■ 4.21
CBX4-203ENST00000494546 SRGAP3O43295 1099 aa41.34■■■■■ 4.21
CBX4-203ENST00000494546 MAP2K2P36507 400 aa41.34■■■■■ 4.21
CBX4-203ENST00000494546 RGMBQ6NW40 437 aa41.34■■■■■ 4.21
CBX4-203ENST00000494546 COPRSQ9NQ92 184 aa41.34■■■■■ 4.21
CBX4-203ENST00000494546 TTF2Q9UNY4 1162 aaKnown RBP41.34■■■■■ 4.21
CBX4-203ENST00000494546 GNAI2P04899 355 aa41.33■■■■■ 4.21
CBX4-203ENST00000494546 IL15P40933 162 aaPredicted RBP41.33■■■■■ 4.21
CBX4-203ENST00000494546 SPDYE2BA6NHP3 402 aa41.31■■■■■ 4.2
CBX4-203ENST00000494546 MYO1BO43795 1136 aa41.31■■■■■ 4.2
CBX4-203ENST00000494546 SPDYE6P0CI01 402 aa41.31■■■■■ 4.2
CBX4-203ENST00000494546 CTCFP49711 727 aaPredicted RBP41.31■■■■■ 4.2
CBX4-203ENST00000494546 FTSJ3Q8IY81 847 aaKnown RBP41.31■■■■■ 4.2
CBX4-203ENST00000494546 PRMT6Q96LA8 375 aaPredicted RBP41.31■■■■■ 4.2
CBX4-203ENST00000494546 MTX1Q13505 466 aa41.3■■■■■ 4.2
CBX4-203ENST00000494546 ATP2B3Q16720 1220 aa41.3■■■■■ 4.2
CBX4-203ENST00000494546 BEGAINQ9BUH8 593 aa41.3■■■■■ 4.2
CBX4-203ENST00000494546 CLRN2A0PK11 232 aa41.29■■■■■ 4.2
CBX4-203ENST00000494546 ZNF157P51786 506 aaPredicted RBP41.29■■■■■ 4.2
CBX4-203ENST00000494546 FKBP1BP68106 108 aa41.29■■■■■ 4.2
CBX4-203ENST00000494546 TBC1D22AQ8WUA7 517 aa41.29■■■■■ 4.2
CBX4-203ENST00000494546 NF2P35240 595 aa41.27■■■■■ 4.2
CBX4-203ENST00000494546 NOGQ13253 232 aa41.27■■■■■ 4.2
CBX4-203ENST00000494546 TTLL12Q14166 644 aaPredicted RBP41.26■■■■■ 4.2
CBX4-203ENST00000494546 GRIK5Q16478 980 aa41.26■■■■■ 4.2
CBX4-203ENST00000494546 MOB2Q70IA6 237 aa41.26■■■■■ 4.2
CBX4-203ENST00000494546 DZIP1LQ8IYY4 767 aaKnown RBP41.26■■■■■ 4.2
CBX4-203ENST00000494546 VEZTQ9HBM0 779 aa41.26■■■■■ 4.2
CBX4-203ENST00000494546 SERPINA10Q9UK55 444 aa41.26■■■■■ 4.2
CBX4-203ENST00000494546 PAPPA2Q9BXP8 1791 aa41.25■■■■■ 4.19
CBX4-203ENST00000494546 AOX1Q06278 1338 aa41.25■■■■■ 4.19
CBX4-203ENST00000494546 CCDC102AQ96A19 550 aa41.25■■■■■ 4.19
CBX4-203ENST00000494546 ARAP2Q8WZ64 1704 aa41.24■■■■■ 4.19
CBX4-203ENST00000494546 ZIC5Q96T25 663 aa41.24■■■■■ 4.19
CBX4-203ENST00000494546 DEFB129Q9H1M3 183 aa41.24■■■■■ 4.19
CBX4-203ENST00000494546 FAM155AB1AL88 458 aaPredicted RBP41.23■■■■■ 4.19
CBX4-203ENST00000494546 ITPRIPQ8IWB1 547 aa41.23■■■■■ 4.19
CBX4-203ENST00000494546 RLBP1P12271 317 aa41.22■■■■■ 4.19
CBX4-203ENST00000494546 CRKP46108 304 aa41.22■■■■■ 4.19
CBX4-203ENST00000494546 LBX1P52954 281 aa41.22■■■■■ 4.19
CBX4-203ENST00000494546 IFFO2Q5TF58 517 aa41.22■■■■■ 4.19
CBX4-203ENST00000494546 UBE2Q2LH0YL09 131 aa41.21■■■■■ 4.19
CBX4-203ENST00000494546 PNMA6EA0A0J9YXQ4 647 aa41.2■■■■■ 4.19
CBX4-203ENST00000494546 HSPA8P11142 646 aaKnown RBP41.2■■■■■ 4.19
CBX4-203ENST00000494546 COL1A1P02452 1464 aaPredicted RBP41.2■■■■■ 4.19
CBX4-203ENST00000494546 ECM29Q5VYK3 1845 aa41.19■■■■■ 4.18
CBX4-203ENST00000494546 PRKG1Q13976 671 aa41.19■■■■■ 4.18
CBX4-203ENST00000494546 PRDM10Q9NQV6 1147 aa41.19■■■■■ 4.18
CBX4-203ENST00000494546 GNL3LQ9NVN8 582 aaKnown RBP41.19■■■■■ 4.18
CBX4-203ENST00000494546 SLC10A3P09131 477 aa41.18■■■■■ 4.18
CBX4-203ENST00000494546 TNS4Q8IZW8 715 aa41.18■■■■■ 4.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms